CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 2

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp122A2VA4394VnonsyngCtgTt16411641113445-13447
ORF1ab/nsp122A2AA4394AsyngcTgcC5113020.59099813445-13447
ORF1ab/nsp122A2AA4394AsyngcTgcG5111570.30724113445-13447
ORF1ab/nsp122A2AA4394AsyngcTgcA511520.10176113445-13447
ORF1ab/nsp122A2TA4394TnonsynGctAct149149113445-13447
ORF1ab/nsp122A2delA4394deldelGCT---103103113445-13447
ORF1ab/nsp122A2SA4394SnonsynGctTct9999113445-13447
ORF1ab/nsp122A2DA4394DnonsyngCtgAt6262113445-13447
ORF1ab/nsp122A2PA4394PnonsynGctCct22113445-13447
ORF1ab/nsp122A2del1A4394del1delGct-ct11113445-13447
ORF1ab/nsp122A2GA4394GnonsyngCtgGt11113445-13447
ORF1ab/nsp122A2EA4394EnonsyngCTgAG11113445-13447

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp122A2VgCtgTt16411641All0.000314
ORF1ab/nsp122A2AgcTgcC302511All0.000058
ORF1ab/nsp122A2AgcTgcG157511All0.00003
ORF1ab/nsp122A2AgcTgcA52511All0.00001
ORF1ab/nsp122A2VgCtgTt456456B.1.1.70.000408
ORF1ab/nsp122A2TGctAct149149All0.000028
ORF1ab/nsp122A2VgCtgTt129129AY.790.156174
ORF1ab/nsp122A2AgcTgcG124124AY.99.20.011428
ORF1ab/nsp122A2delGCT---103103All0.00002
ORF1ab/nsp122A2VgCtgTt102102AY.30.001015
ORF1ab/nsp122A2SGctTct9999All0.000019
ORF1ab/nsp122A2AgcTgcC8798B.1.617.20.000328
ORF1ab/nsp122A2AgcTgcA1198B.1.617.20.000041
ORF1ab/nsp122A2VgCtgTt9090AY.40.00014
ORF1ab/nsp122A2VgCtgTt7979B.1.617.20.000297
ORF1ab/nsp122A2AgcTgcC6565AY.430.000288
ORF1ab/nsp122A2DgCtgAt6262All0.000012
ORF1ab/nsp122A2VgCtgTt5353B.1.1.5190.002105
ORF1ab/nsp122A2VgCtgTt5353B.1.177.790.124122
ORF1ab/nsp122A2VgCtgTt4545B.1.10.000816
ORF1ab/nsp122A2VgCtgTt4444AY.440.000268
ORF1ab/nsp122A2VgCtgTt3737B.1.369.11
ORF1ab/nsp122A2VgCtgTt3636B.1.4290.000847
ORF1ab/nsp122A2VgCtgTt3535AY.46.60.002527
ORF1ab/nsp122A2VgCtgTt3434P.10.000536
ORF1ab/nsp122A2AgcTgcC3030B.1.4270.001515
ORF1ab/nsp122A2VgCtgTt2929AY.430.000128
ORF1ab/nsp122A2SGctTct2929B.1.1.70.000026
ORF1ab/nsp122A2delGCT---2828B.1.1.70.000025
ORF1ab/nsp122A2VgCtgTt2727B.1.3690.007701
ORF1ab/nsp122A2TGctAct2525B.1.1.70.000022
ORF1ab/nsp122A2VgCtgTt2525B.1.20.00022
ORF1ab/nsp122A2DgCtgAt2424B.1.1.5190.000953
ORF1ab/nsp122A2VgCtgTt2222A.2.50.010978
ORF1ab/nsp122A2AgcTgcC2121AY.250.000126
ORF1ab/nsp122A2VgCtgTt2121B.1.1770.000277
ORF1ab/nsp122A2AgcTgcG1620AY.40.000025
ORF1ab/nsp122A2AgcTgcC320AY.40.000005
ORF1ab/nsp122A2AgcTgcA120AY.40.000002
ORF1ab/nsp122A2AgcTgcA1919AY.1000.000874
ORF1ab/nsp122A2AgcTgcC1719AY.1020.000451
ORF1ab/nsp122A2AgcTgcA219AY.1020.000053
ORF1ab/nsp122A2VgCtgTt1919AY.1030.000118
ORF1ab/nsp122A2VgCtgTt1919AY.940.008411
ORF1ab/nsp122A2AgcTgcC1318AY.440.000079
ORF1ab/nsp122A2AgcTgcG318AY.440.000018
ORF1ab/nsp122A2AgcTgcA218AY.440.000012
ORF1ab/nsp122A2TGctAct1616B.1.617.20.00006
ORF1ab/nsp122A2VgCtgTt1515B.1.5260.000353
ORF1ab/nsp122A2VgCtgTt1414AY.420.000563
ORF1ab/nsp122A2VgCtgTt1414B.10.000128
ORF1ab/nsp122A2VgCtgTt1414B.1.351.20.004236
ORF1ab/nsp122A2VgCtgTt1212AY.1180.000752
ORF1ab/nsp122A2TGctAct1212AY.40.000019
ORF1ab/nsp122A2delGCT---1212B.1.177.860.002201
ORF1ab/nsp122A2TGctAct1212B.1.6190.010453
ORF1ab/nsp122A2SGctTct1111AY.1030.000068
ORF1ab/nsp122A2VgCtgTt1111B.1.4270.000555
ORF1ab/nsp122A2VgCtgTt99AY.1130.001282
ORF1ab/nsp122A2DgCtgAt99AY.40.000014
ORF1ab/nsp122A2AgcTgcC49B.1.1.70.000004
ORF1ab/nsp122A2AgcTgcA39B.1.1.70.000003
ORF1ab/nsp122A2AgcTgcG29B.1.1.70.000002
ORF1ab/nsp122A2TGctAct88AY.1030.00005
ORF1ab/nsp122A2VgCtgTt88AY.250.000048
ORF1ab/nsp122A2VgCtgTt88AY.260.000226
ORF1ab/nsp122A2VgCtgTt88B.1.2100.017058
ORF1ab/nsp122A2VgCtgTt88B.1.2580.000532
ORF1ab/nsp122A2VgCtgTt88B.1.3510.000238
ORF1ab/nsp122A2VgCtgTt88C.370.000929
ORF1ab/nsp122A2VgCtgTt77AY.1020.000186
ORF1ab/nsp122A2delGCT---77AY.40.000011
ORF1ab/nsp122A2AgcTgcC77AY.530.002013
ORF1ab/nsp122A2DgCtgAt77B.1.1.70.000006
ORF1ab/nsp122A2TGctAct77B.1.221.10.020349
ORF1ab/nsp122A2AgcTgcC77B.1.36.180.002941
ORF1ab/nsp122A2TGctAct66AY.9.10.000502
ORF1ab/nsp122A2delGCT---66B.10.000055
ORF1ab/nsp122A2TGctAct66B.1.36.290.003104
ORF1ab/nsp122A2AgcTgcA45AY.1200.000149
ORF1ab/nsp122A2AgcTgcC15AY.1200.000037
ORF1ab/nsp122A2SGctTct55AY.40.000008
ORF1ab/nsp122A2AgcTgcG55AY.50.000103
ORF1ab/nsp122A2VgCtgTt55B.1.351.30.004382
ORF1ab/nsp122A2SGctTct55B.1.4270.000252
ORF1ab/nsp122A2SGctTct55B.1.617.20.000019
ORF1ab/nsp122A2DgCtgAt44AY.1190.000141
ORF1ab/nsp122A2delGCT---44AY.230.000279
ORF1ab/nsp122A2AgcTgcC34AY.260.000085
ORF1ab/nsp122A2AgcTgcG14AY.260.000028
ORF1ab/nsp122A2VgCtgTt44AY.390.000099
ORF1ab/nsp122A2delGCT---44AY.430.000018
ORF1ab/nsp122A2SGctTct44AY.46.60.000289
ORF1ab/nsp122A2TGctAct44B.10.000037
ORF1ab/nsp122A2SGctTct44B.10.000037
ORF1ab/nsp122A2delGCT---44B.1.10.000073
ORF1ab/nsp122A2SGctTct44B.1.10.000073
ORF1ab/nsp122A2delGCT---44B.1.1770.000053
ORF1ab/nsp122A2VgCtgTt44B.1.36.290.002069
ORF1ab/nsp122A2AgcTgcG44B.1.5810.037736
ORF1ab/nsp122A2VgCtgTt44B.1.6370.000292
ORF1ab/nsp122A2VgCtgTt44C.36.30.002269
ORF1ab/nsp122A2VgCtgTt33AY.1000.000138
ORF1ab/nsp122A2VgCtgTt33AY.1190.000106
ORF1ab/nsp122A2SGctTct33AY.1210.000406
ORF1ab/nsp122A2VgCtgTt33AY.230.000209
ORF1ab/nsp122A2VgCtgTt33AY.290.000047
ORF1ab/nsp122A2AgcTgcC33AY.390.000074
ORF1ab/nsp122A2TGctAct33AY.430.000013
ORF1ab/nsp122A2TGctAct33AY.440.000018
ORF1ab/nsp122A2VgCtgTt33AY.470.000093
ORF1ab/nsp122A2VgCtgTt33AY.590.001589
ORF1ab/nsp122A2TGctAct33AY.610.000314
ORF1ab/nsp122A2VgCtgTt33AY.70.000588
ORF1ab/nsp122A2AgcTgcA23B.1.10.000036
ORF1ab/nsp122A2AgcTgcG13B.1.10.000018
ORF1ab/nsp122A2TGctAct33B.1.1.2160.002671
ORF1ab/nsp122A2VgCtgTt33B.1.1.3180.000905
ORF1ab/nsp122A2VgCtgTt33B.1.1.4340.001046
ORF1ab/nsp122A2TGctAct33B.1.1.4640.004418
ORF1ab/nsp122A2AgcTgcC33B.1.1.5190.000119
ORF1ab/nsp122A2AgcTgcC33B.1.1770.00004
ORF1ab/nsp122A2DgCtgAt33B.1.177.530.007177
ORF1ab/nsp122A2VgCtgTt33B.1.177.770.002179
ORF1ab/nsp122A2delGCT---33B.1.20.000026
ORF1ab/nsp122A2TGctAct33B.1.20.000026
ORF1ab/nsp122A2VgCtgTt33B.1.2430.000209
ORF1ab/nsp122A2AgcTgcC33B.1.36.160.004274
ORF1ab/nsp122A2VgCtgTt33B.1.4330.009585
ORF1ab/nsp122A2VgCtgTt33B.1.5250.000339
ORF1ab/nsp122A2VgCtgTt33B.1.6090.001438
ORF1ab/nsp122A2delGCT---33B.1.617.20.000011
ORF1ab/nsp122A2PGctCct22All0
ORF1ab/nsp122A2SGctTct22AY.1020.000053
ORF1ab/nsp122A2AgcTgcA12AY.1030.000006
ORF1ab/nsp122A2AgcTgcC12AY.1030.000006
ORF1ab/nsp122A2AgcTgcC22AY.1170.000169
ORF1ab/nsp122A2AgcTgcC22AY.200.000078
ORF1ab/nsp122A2VgCtgTt22AY.200.000078
ORF1ab/nsp122A2AgcTgcC22AY.230.000139
ORF1ab/nsp122A2TGctAct22AY.250.000012
ORF1ab/nsp122A2SGctTct22AY.30.00002
ORF1ab/nsp122A2AgcTgcA22AY.30.00002
ORF1ab/nsp122A2VgCtgTt22AY.3.10.000171
ORF1ab/nsp122A2AgcTgcC22AY.330.000134
ORF1ab/nsp122A2AgcTgcC22AY.360.000296
ORF1ab/nsp122A2SGctTct22AY.390.000049
ORF1ab/nsp122A2VgCtgTt22AY.4.20.000043
ORF1ab/nsp122A2delGCT---22AY.4.50.000215
ORF1ab/nsp122A2AgcTgcC22AY.460.000208
ORF1ab/nsp122A2VgCtgTt22AY.680.000547
ORF1ab/nsp122A2TGctAct22AY.710.00095
ORF1ab/nsp122A2TGctAct22AY.750.000112
ORF1ab/nsp122A2TGctAct22AY.75.10.000361
ORF1ab/nsp122A2VgCtgTt22AY.820.002714
ORF1ab/nsp122A2VgCtgTt22AY.840.000875
ORF1ab/nsp122A2TGctAct22AY.9.20.000073
ORF1ab/nsp122A2AgcTgcC22AY.930.000546
ORF1ab/nsp122A2VgCtgTt22AY.98.10.000097
ORF1ab/nsp122A2TGctAct22B0.000256
ORF1ab/nsp122A2VgCtgTt22B0.000256
ORF1ab/nsp122A2AgcTgcC22B.1.1.2250.014388
ORF1ab/nsp122A2SGctTct22B.1.1.390.001019
ORF1ab/nsp122A2VgCtgTt22B.1.1.4670.038462
ORF1ab/nsp122A2VgCtgTt22B.1.110.30.001437
ORF1ab/nsp122A2VgCtgTt22B.1.1600.000062
ORF1ab/nsp122A2VgCtgTt22B.1.177.810.000379
ORF1ab/nsp122A2VgCtgTt22B.1.177.830.002963
ORF1ab/nsp122A2DgCtgAt22B.1.20.000018
ORF1ab/nsp122A2SGctTct22B.1.20.000018
ORF1ab/nsp122A2VgCtgTt22B.1.2210.000142
ORF1ab/nsp122A2TGctAct22B.1.258.170.000208
ORF1ab/nsp122A2TGctAct22B.1.3510.000059
ORF1ab/nsp122A2VgCtgTt22B.1.466.10.014388
ORF1ab/nsp122A2VgCtgTt22B.1.5950.000522
ORF1ab/nsp122A2VgCtgTt22C.360.001821
ORF1ab/nsp122A2SGctTct22D.20.00015
ORF1ab/nsp122A2delGCT---22P.10.000032
ORF1ab/nsp122A2TGctAct22P.1.140.000096
ORF1ab/nsp122A2VgCtgTt11AE.80.000489
ORF1ab/nsp122A2GgCtgGt11All0
ORF1ab/nsp122A2del1Gct-ct11All0
ORF1ab/nsp122A2EgCTgAG11All0
ORF1ab/nsp122A2SGctTct11AM.40.003571
ORF1ab/nsp122A2delGCT---11AU.30.00211
ORF1ab/nsp122A2TGctAct11AY.1000.000046
ORF1ab/nsp122A2TGctAct11AY.1020.000027
ORF1ab/nsp122A2DgCtgAt11AY.1030.000006
ORF1ab/nsp122A2AgcTgcA11AY.1050.000643
ORF1ab/nsp122A2delGCT---11AY.1110.000183
ORF1ab/nsp122A2SGctTct11AY.1130.000142
ORF1ab/nsp122A2VgCtgTt11AY.116.10.000311
ORF1ab/nsp122A2delGCT---11AY.1190.000035
ORF1ab/nsp122A2AgcTgcC11AY.1190.000035
ORF1ab/nsp122A2VgCtgTt11AY.120.000316
ORF1ab/nsp122A2VgCtgTt11AY.1200.000037
ORF1ab/nsp122A2VgCtgTt11AY.1210.000135
ORF1ab/nsp122A2TGctAct11AY.200.000039
ORF1ab/nsp122A2DgCtgAt11AY.200.000039
ORF1ab/nsp122A2VgCtgTt11AY.23.10.000417
ORF1ab/nsp122A2delGCT---11AY.250.000006
ORF1ab/nsp122A2DgCtgAt11AY.250.000006
ORF1ab/nsp122A2AgcTgcC11AY.290.000016
ORF1ab/nsp122A2TGctAct11AY.290.000016
ORF1ab/nsp122A2delGCT---11AY.30.00001
ORF1ab/nsp122A2AgcTgcC11AY.3.10.000085
ORF1ab/nsp122A2VgCtgTt11AY.330.000067
ORF1ab/nsp122A2SGctTct11AY.330.000067
ORF1ab/nsp122A2TGctAct11AY.34.10.00051
ORF1ab/nsp122A2AgcTgcC11AY.350.000233
ORF1ab/nsp122A2VgCtgTt11AY.360.000148
ORF1ab/nsp122A2TGctAct11AY.390.000025
ORF1ab/nsp122A2VgCtgTt11AY.39.10.00004
ORF1ab/nsp122A2TGctAct11AY.4.20.000022
ORF1ab/nsp122A2DgCtgAt11AY.420.00004
ORF1ab/nsp122A2SGctTct11AY.430.000004
ORF1ab/nsp122A2DgCtgAt11AY.440.000006
ORF1ab/nsp122A2delGCT---11AY.440.000006
ORF1ab/nsp122A2SGctTct11AY.450.000122
ORF1ab/nsp122A2VgCtgTt11AY.450.000122
ORF1ab/nsp122A2delGCT---11AY.46.20.000635
ORF1ab/nsp122A2TGctAct11AY.46.60.000072
ORF1ab/nsp122A2AgcTgcC11AY.470.000031
ORF1ab/nsp122A2SGctTct11AY.490.003195
ORF1ab/nsp122A2SGctTct11AY.50.000021
ORF1ab/nsp122A2VgCtgTt11AY.540.000095
ORF1ab/nsp122A2AgcTgcC11AY.590.00053
ORF1ab/nsp122A2VgCtgTt11AY.610.000105
ORF1ab/nsp122A2VgCtgTt11AY.660.00107
ORF1ab/nsp122A2VgCtgTt11AY.7.10.000113
ORF1ab/nsp122A2SGctTct11AY.700.000209
ORF1ab/nsp122A2TGctAct11AY.700.000209
ORF1ab/nsp122A2DgCtgAt11AY.750.000056
ORF1ab/nsp122A2delGCT---11AY.750.000056
ORF1ab/nsp122A2delGCT---11AY.75.10.00018
ORF1ab/nsp122A2TGctAct11AY.790.001211
ORF1ab/nsp122A2AgcTgcC11AY.840.000437
ORF1ab/nsp122A2VgCtgTt11AY.880.000884
ORF1ab/nsp122A2VgCtgTt11AY.90.000068
ORF1ab/nsp122A2VgCtgTt11AY.9.20.000037
ORF1ab/nsp122A2SGctTct11AY.9.20.000037
ORF1ab/nsp122A2AgcTgcC11AY.9.20.000037
ORF1ab/nsp122A2delGCT---11AY.9.20.000037
ORF1ab/nsp122A2VgCtgTt11AY.920.000287
ORF1ab/nsp122A2VgCtgTt11AY.980.000079
ORF1ab/nsp122A2AgcTgcC11AY.980.000079
ORF1ab/nsp122A2EgCTgAG11B0.000128
ORF1ab/nsp122A2AgcTgcA11B0.000128
ORF1ab/nsp122A2del1Gct-ct11B.10.000009
ORF1ab/nsp122A2PGctCct11B.10.000009
ORF1ab/nsp122A2AgcTgcA11B.10.000009
ORF1ab/nsp122A2DgCtgAt11B.1.10.000018
ORF1ab/nsp122A2GgCtgGt11B.1.10.000018
ORF1ab/nsp122A2delGCT---11B.1.1.10.000327
ORF1ab/nsp122A2VgCtgTt11B.1.1.1380.006061
ORF1ab/nsp122A2DgCtgAt11B.1.1.1740.003378
ORF1ab/nsp122A2VgCtgTt11B.1.1.1760.000439
ORF1ab/nsp122A2TGctAct11B.1.1.3180.000302
ORF1ab/nsp122A2AgcTgcC11B.1.1.3180.000302
ORF1ab/nsp122A2delGCT---11B.1.1.3480.000796
ORF1ab/nsp122A2VgCtgTt11B.1.1.370.000193
ORF1ab/nsp122A2VgCtgTt11B.1.1.4160.000905
ORF1ab/nsp122A2AgcTgcC11B.1.1.4340.000349
ORF1ab/nsp122A2delGCT---11B.1.1.5190.00004
ORF1ab/nsp122A2AgcTgcG11B.1.1.5260.003546
ORF1ab/nsp122A2VgCtgTt11B.1.1.580.005376
ORF1ab/nsp122A2VgCtgTt11B.1.1.700.000341
ORF1ab/nsp122A2delGCT---11B.1.1.700.000341
ORF1ab/nsp122A2DgCtgAt11B.1.1180.006711
ORF1ab/nsp122A2SGctTct11B.1.1770.000013
ORF1ab/nsp122A2VgCtgTt11B.1.177.20.004545
ORF1ab/nsp122A2VgCtgTt11B.1.177.330.001645
ORF1ab/nsp122A2delGCT---11B.1.177.540.000606
ORF1ab/nsp122A2DgCtgAt11B.1.177.570.000281
ORF1ab/nsp122A2delGCT---11B.1.177.730.000566
ORF1ab/nsp122A2AgcTgcA11B.1.177.860.000183
ORF1ab/nsp122A2VgCtgTt11B.1.177.860.000183
ORF1ab/nsp122A2AgcTgcC11B.1.20.000009
ORF1ab/nsp122A2PGctCct11B.1.2210.000071
ORF1ab/nsp122A2SGctTct11B.1.2210.000071
ORF1ab/nsp122A2SGctTct11B.1.2250.015385
ORF1ab/nsp122A2VgCtgTt11B.1.2340.000132
ORF1ab/nsp122A2delGCT---11B.1.258.100.011364
ORF1ab/nsp122A2SGctTct11B.1.258.30.001675
ORF1ab/nsp122A2SGctTct11B.1.3510.00003
ORF1ab/nsp122A2VgCtgTt11B.1.360.000146
ORF1ab/nsp122A2delGCT---11B.1.360.000146
ORF1ab/nsp122A2VgCtgTt11B.1.3620.001541
ORF1ab/nsp122A2TGctAct11B.1.3800.006623
ORF1ab/nsp122A2VgCtgTt11B.1.3810.007812
ORF1ab/nsp122A2AgcTgcC11B.1.4290.000024
ORF1ab/nsp122A2delGCT---11B.1.4560.003268
ORF1ab/nsp122A2DgCtgAt11B.1.4620.007246
ORF1ab/nsp122A2TGctAct11B.1.466.20.000391
ORF1ab/nsp122A2VgCtgTt11B.1.4690.00361
ORF1ab/nsp122A2VgCtgTt11B.1.5090.000866
ORF1ab/nsp122A2VgCtgTt11B.1.5110.034483
ORF1ab/nsp122A2DgCtgAt11B.1.5260.000024
ORF1ab/nsp122A2TGctAct11B.1.5260.000024
ORF1ab/nsp122A2delGCT---11B.1.5330.009615
ORF1ab/nsp122A2VgCtgTt11B.1.5610.000397
ORF1ab/nsp122A2VgCtgTt11B.1.5760.000907
ORF1ab/nsp122A2VgCtgTt11B.1.5770.000687
ORF1ab/nsp122A2VgCtgTt11B.1.5810.009434
ORF1ab/nsp122A2delGCT---11B.1.5850.027778
ORF1ab/nsp122A2AgcTgcC11B.1.5960.000087
ORF1ab/nsp122A2VgCtgTt11B.1.5960.000087
ORF1ab/nsp122A2AgcTgcC11B.1.6060.006024
ORF1ab/nsp122A2AgcTgcA11B.1.617.10.000129
ORF1ab/nsp122A2VgCtgTt11B.1.617.10.000129
ORF1ab/nsp122A2SGctTct11B.1.6210.000089
ORF1ab/nsp122A2SGctTct11B.1.6370.000073
ORF1ab/nsp122A2TGctAct11B.400.000364
ORF1ab/nsp122A2TGctAct11C.370.000116
ORF1ab/nsp122A2TGctAct11P.10.000016
ORF1ab/nsp122A2SGctTct11P.10.000016
ORF1ab/nsp122A2delGCT---11P.1.120.000484
ORF1ab/nsp122A2VgCtgTt11P.1.130.000898
ORF1ab/nsp122A2delGCT---11P.1.150.000232
ORF1ab/nsp122A2delGCT---11P.20.000187
ORF1ab/nsp122A2VgCtgTt11P.20.000187
ORF1ab/nsp122A2VgCtgTt11Q.10.000126
ORF1ab/nsp122A2VgCtgTt11R.10.00009
ORF1ab/nsp122A2DgCtgAt11R.10.00009