CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 2 | A2V | A4394V | nonsyn | gCt | gTt | 1641 | 1641 | 1 | 13445-13447 |
ORF1ab/nsp12 | 2 | A2A | A4394A | syn | gcT | gcC | 511 | 302 | 0.590998 | 13445-13447 |
ORF1ab/nsp12 | 2 | A2A | A4394A | syn | gcT | gcG | 511 | 157 | 0.307241 | 13445-13447 |
ORF1ab/nsp12 | 2 | A2A | A4394A | syn | gcT | gcA | 511 | 52 | 0.101761 | 13445-13447 |
ORF1ab/nsp12 | 2 | A2T | A4394T | nonsyn | Gct | Act | 149 | 149 | 1 | 13445-13447 |
ORF1ab/nsp12 | 2 | A2del | A4394del | del | GCT | --- | 103 | 103 | 1 | 13445-13447 |
ORF1ab/nsp12 | 2 | A2S | A4394S | nonsyn | Gct | Tct | 99 | 99 | 1 | 13445-13447 |
ORF1ab/nsp12 | 2 | A2D | A4394D | nonsyn | gCt | gAt | 62 | 62 | 1 | 13445-13447 |
ORF1ab/nsp12 | 2 | A2P | A4394P | nonsyn | Gct | Cct | 2 | 2 | 1 | 13445-13447 |
ORF1ab/nsp12 | 2 | A2del1 | A4394del1 | del | Gct | -ct | 1 | 1 | 1 | 13445-13447 |
ORF1ab/nsp12 | 2 | A2G | A4394G | nonsyn | gCt | gGt | 1 | 1 | 1 | 13445-13447 |
ORF1ab/nsp12 | 2 | A2E | A4394E | nonsyn | gCT | gAG | 1 | 1 | 1 | 13445-13447 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1641 | 1641 | All | 0.000314 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 302 | 511 | All | 0.000058 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcG | 157 | 511 | All | 0.00003 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcA | 52 | 511 | All | 0.00001 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 456 | 456 | B.1.1.7 | 0.000408 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 149 | 149 | All | 0.000028 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 129 | 129 | AY.79 | 0.156174 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcG | 124 | 124 | AY.99.2 | 0.011428 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 103 | 103 | All | 0.00002 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 102 | 102 | AY.3 | 0.001015 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 99 | 99 | All | 0.000019 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 87 | 98 | B.1.617.2 | 0.000328 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcA | 11 | 98 | B.1.617.2 | 0.000041 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 90 | 90 | AY.4 | 0.00014 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 79 | 79 | B.1.617.2 | 0.000297 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 65 | 65 | AY.43 | 0.000288 |
ORF1ab/nsp12 | 2 | A2D | gCt | gAt | 62 | 62 | All | 0.000012 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 53 | 53 | B.1.1.519 | 0.002105 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 53 | 53 | B.1.177.79 | 0.124122 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 45 | 45 | B.1.1 | 0.000816 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 44 | 44 | AY.44 | 0.000268 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 37 | 37 | B.1.369.1 | 1 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 36 | 36 | B.1.429 | 0.000847 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 35 | 35 | AY.46.6 | 0.002527 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 34 | 34 | P.1 | 0.000536 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 30 | 30 | B.1.427 | 0.001515 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 29 | 29 | AY.43 | 0.000128 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 29 | 29 | B.1.1.7 | 0.000026 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 28 | 28 | B.1.1.7 | 0.000025 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 27 | 27 | B.1.369 | 0.007701 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 25 | 25 | B.1.1.7 | 0.000022 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 25 | 25 | B.1.2 | 0.00022 |
ORF1ab/nsp12 | 2 | A2D | gCt | gAt | 24 | 24 | B.1.1.519 | 0.000953 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 22 | 22 | A.2.5 | 0.010978 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 21 | 21 | AY.25 | 0.000126 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 21 | 21 | B.1.177 | 0.000277 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcG | 16 | 20 | AY.4 | 0.000025 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 3 | 20 | AY.4 | 0.000005 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcA | 1 | 20 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcA | 19 | 19 | AY.100 | 0.000874 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 17 | 19 | AY.102 | 0.000451 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcA | 2 | 19 | AY.102 | 0.000053 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 19 | 19 | AY.103 | 0.000118 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 19 | 19 | AY.94 | 0.008411 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 13 | 18 | AY.44 | 0.000079 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcG | 3 | 18 | AY.44 | 0.000018 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcA | 2 | 18 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 16 | 16 | B.1.617.2 | 0.00006 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 15 | 15 | B.1.526 | 0.000353 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 14 | 14 | AY.42 | 0.000563 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 14 | 14 | B.1 | 0.000128 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 14 | 14 | B.1.351.2 | 0.004236 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 12 | 12 | AY.118 | 0.000752 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 12 | 12 | B.1.177.86 | 0.002201 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 12 | 12 | B.1.619 | 0.010453 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 11 | 11 | AY.103 | 0.000068 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 11 | 11 | B.1.427 | 0.000555 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 9 | 9 | AY.113 | 0.001282 |
ORF1ab/nsp12 | 2 | A2D | gCt | gAt | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 4 | 9 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcA | 3 | 9 | B.1.1.7 | 0.000003 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcG | 2 | 9 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 8 | 8 | B.1.210 | 0.017058 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 8 | 8 | B.1.258 | 0.000532 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 8 | 8 | B.1.351 | 0.000238 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 7 | 7 | AY.53 | 0.002013 |
ORF1ab/nsp12 | 2 | A2D | gCt | gAt | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 7 | 7 | B.1.221.1 | 0.020349 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 7 | 7 | B.1.36.18 | 0.002941 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 6 | 6 | AY.9.1 | 0.000502 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 6 | 6 | B.1.36.29 | 0.003104 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcA | 4 | 5 | AY.120 | 0.000149 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 1 | 5 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcG | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 5 | 5 | B.1.351.3 | 0.004382 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp12 | 2 | A2D | gCt | gAt | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 3 | 4 | AY.26 | 0.000085 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcG | 1 | 4 | AY.26 | 0.000028 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcG | 4 | 4 | B.1.581 | 0.037736 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 4 | 4 | C.36.3 | 0.002269 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcA | 2 | 3 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcG | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 3 | 3 | B.1.1.464 | 0.004418 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp12 | 2 | A2D | gCt | gAt | 3 | 3 | B.1.177.53 | 0.007177 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 3 | 3 | B.1.177.77 | 0.002179 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 3 | 3 | B.1.36.16 | 0.004274 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 3 | 3 | B.1.433 | 0.009585 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp12 | 2 | A2P | Gct | Cct | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcA | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcA | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 2 | 2 | B | 0.000256 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 2 | 2 | B.1.1.225 | 0.014388 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 2 | 2 | B.1.1.467 | 0.038462 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 2 | 2 | B.1.177.83 | 0.002963 |
ORF1ab/nsp12 | 2 | A2D | gCt | gAt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 2 | 2 | B.1.466.1 | 0.014388 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp12 | 2 | A2G | gCt | gGt | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 2 | A2del1 | Gct | -ct | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 2 | A2E | gCT | gAG | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 1 | 1 | AM.4 | 0.003571 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 2 | A2D | gCt | gAt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcA | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp12 | 2 | A2D | gCt | gAt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 2 | A2D | gCt | gAt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp12 | 2 | A2D | gCt | gAt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 2 | A2D | gCt | gAt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp12 | 2 | A2D | gCt | gAt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 2 | A2E | gCT | gAG | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 2 | A2del1 | Gct | -ct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 2 | A2P | Gct | Cct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 2 | A2D | gCt | gAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 2 | A2G | gCt | gGt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | B.1.1.138 | 0.006061 |
ORF1ab/nsp12 | 2 | A2D | gCt | gAt | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcG | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 2 | A2D | gCt | gAt | 1 | 1 | B.1.118 | 0.006711 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | B.1.177.2 | 0.004545 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp12 | 2 | A2D | gCt | gAt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcA | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 2 | A2P | Gct | Cct | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 1 | 1 | B.1.225 | 0.015385 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp12 | 2 | A2D | gCt | gAt | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | B.1.511 | 0.034483 |
ORF1ab/nsp12 | 2 | A2D | gCt | gAt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 1 | 1 | B.1.585 | 0.027778 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcC | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp12 | 2 | A2A | gcT | gcA | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 2 | A2T | Gct | Act | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp12 | 2 | A2S | Gct | Tct | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp12 | 2 | A2del | GCT | --- | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 2 | A2V | gCt | gTt | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp12 | 2 | A2D | gCt | gAt | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|