CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 197

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12197R197QR4589QnonsyncGacAa3747637476114029-14031
ORF1ab/nsp12197R197RR4589RsyncgAcgC3291870.56838914029-14031
ORF1ab/nsp12197R197RR4589RsyncgAcgG329630.19148914029-14031
ORF1ab/nsp12197R197RR4589RsynCgaAga329530.16109414029-14031
ORF1ab/nsp12197R197RR4589RsyncgAcgT329260.079027414029-14031
ORF1ab/nsp12197R197LR4589LnonsyncGacTa9292114029-14031
ORF1ab/nsp12197R197delR4589deldelCGA---2323114029-14031
ORF1ab/nsp12197R197XR4589XnonsynCgaTga77114029-14031
ORF1ab/nsp12197R197del1R4589del1delcgAcg-430.7514029-14031
ORF1ab/nsp12197R197del1R4589del1delcGac-a410.2514029-14031
ORF1ab/nsp12197R197ER4589EnonsynCGaGAa22114029-14031
ORF1ab/nsp12197R197GR4589GnonsynCgaGga210.514029-14031
ORF1ab/nsp12197R197GR4589GnonsynCgAGgG210.514029-14031
ORF1ab/nsp12197R197PR4589PnonsyncGacCa11114029-14031

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12197R197QcGacAa3747637476All0.007168
ORF1ab/nsp12197R197QcGacAa2320423204AY.9.20.852274
ORF1ab/nsp12197R197QcGacAa1190211902AY.9.10.996484
ORF1ab/nsp12197R197QcGacAa13671367AY.90.092402
ORF1ab/nsp12197R197QcGacAa506506AY.9.2.11
ORF1ab/nsp12197R197RcgAcgC187329All0.000036
ORF1ab/nsp12197R197RcgAcgG63329All0.000012
ORF1ab/nsp12197R197RCgaAga53329All0.00001
ORF1ab/nsp12197R197RcgAcgT26329All0.000005
ORF1ab/nsp12197R197RcgAcgC163177B.1.1.70.000146
ORF1ab/nsp12197R197RcgAcgT6177B.1.1.70.000005
ORF1ab/nsp12197R197RcgAcgG5177B.1.1.70.000004
ORF1ab/nsp12197R197RCgaAga3177B.1.1.70.000003
ORF1ab/nsp12197R197QcGacAa114114AY.40.000177
ORF1ab/nsp12197R197QcGacAa108108B.1.617.20.000407
ORF1ab/nsp12197R197LcGacTa9292All0.000018
ORF1ab/nsp12197R197QcGacAa4242B.1.1.70.000038
ORF1ab/nsp12197R197QcGacAa3838B.1.1770.0005
ORF1ab/nsp12197R197QcGacAa3030P.10.000473
ORF1ab/nsp12197R197QcGacAa2828B.4.10.528302
ORF1ab/nsp12197R197delCGA---2323All0.000004
ORF1ab/nsp12197R197QcGacAa2323AY.430.000102
ORF1ab/nsp12197R197LcGacTa2222AY.40.000034
ORF1ab/nsp12197R197LcGacTa1717B.10.000156
ORF1ab/nsp12197R197RCgaAga1616AY.440.000097
ORF1ab/nsp12197R197RcgAcgT1515AY.30.000149
ORF1ab/nsp12197R197RcgAcgG1414AY.3.10.001194
ORF1ab/nsp12197R197QcGacAa1414AY.440.000085
ORF1ab/nsp12197R197RcgAcgG911AY.290.000142
ORF1ab/nsp12197R197RcgAcgC211AY.290.000032
ORF1ab/nsp12197R197LcGacTa1111B.1.617.20.000041
ORF1ab/nsp12197R197RCgaAga1011P.10.000158
ORF1ab/nsp12197R197RcgAcgG111P.10.000016
ORF1ab/nsp12197R197QcGacAa99AY.540.000858
ORF1ab/nsp12197R197QcGacAa99B.1.1.370.001736
ORF1ab/nsp12197R197RcgAcgG79B.1.617.20.000026
ORF1ab/nsp12197R197RCgaAga19B.1.617.20.000004
ORF1ab/nsp12197R197RcgAcgC19B.1.617.20.000004
ORF1ab/nsp12197R197XCgaTga77All0.000001
ORF1ab/nsp12197R197RcgAcgG37AY.40.000005
ORF1ab/nsp12197R197RcgAcgC37AY.40.000005
ORF1ab/nsp12197R197RcgAcgT17AY.40.000002
ORF1ab/nsp12197R197QcGacAa77B.10.000064
ORF1ab/nsp12197R197QcGacAa66B.1.1.3480.004777
ORF1ab/nsp12197R197delCGA---66B.1.1.70.000005
ORF1ab/nsp12197R197LcGacTa55AY.1030.000031
ORF1ab/nsp12197R197RCgaAga25AY.250.000012
ORF1ab/nsp12197R197RcgAcgG15AY.250.000006
ORF1ab/nsp12197R197RcgAcgT15AY.250.000006
ORF1ab/nsp12197R197RcgAcgC15AY.250.000006
ORF1ab/nsp12197R197RCgaAga35AY.320.001597
ORF1ab/nsp12197R197RcgAcgT25AY.320.001065
ORF1ab/nsp12197R197RcgAcgC45B.1.10.000073
ORF1ab/nsp12197R197RcgAcgG15B.1.10.000018
ORF1ab/nsp12197R197LcGacTa55B.1.1.70.000004
ORF1ab/nsp12197R197del1cgAcg-34All0.000001
ORF1ab/nsp12197R197del1cGac-a14All0
ORF1ab/nsp12197R197QcGacAa44AY.1030.000025
ORF1ab/nsp12197R197RCgaAga24AY.1030.000012
ORF1ab/nsp12197R197RcgAcgG24AY.1030.000012
ORF1ab/nsp12197R197LcGacTa44AY.330.000267
ORF1ab/nsp12197R197QcGacAa44AY.340.000388
ORF1ab/nsp12197R197QcGacAa44AY.420.000161
ORF1ab/nsp12197R197LcGacTa44AY.440.000024
ORF1ab/nsp12197R197QcGacAa44AY.700.000834
ORF1ab/nsp12197R197RcgAcgG24B.10.000018
ORF1ab/nsp12197R197RCgaAga14B.10.000009
ORF1ab/nsp12197R197RcgAcgC14B.10.000009
ORF1ab/nsp12197R197RCgaAga24B.1.20.000018
ORF1ab/nsp12197R197RcgAcgC14B.1.20.000009
ORF1ab/nsp12197R197RcgAcgG14B.1.20.000009
ORF1ab/nsp12197R197LcGacTa44B.1.360.000584
ORF1ab/nsp12197R197QcGacAa44Q.10.000505
ORF1ab/nsp12197R197LcGacTa33AY.250.000018
ORF1ab/nsp12197R197QcGacAa33AY.4.40.001227
ORF1ab/nsp12197R197RcgAcgC33B.1.1.500.002037
ORF1ab/nsp12197R197RcgAcgG33B.1.6210.000266
ORF1ab/nsp12197R197QcGacAa33C.370.000348
ORF1ab/nsp12197R197ECGaGAa22All0
ORF1ab/nsp12197R197GCgaGga12All0
ORF1ab/nsp12197R197GCgAGgG12All0
ORF1ab/nsp12197R197RCgaAga22AY.1020.000053
ORF1ab/nsp12197R197QcGacAa22AY.1200.000074
ORF1ab/nsp12197R197RCgaAga12AY.39.10.00004
ORF1ab/nsp12197R197RcgAcgG12AY.39.10.00004
ORF1ab/nsp12197R197QcGacAa22AY.4.20.000043
ORF1ab/nsp12197R197RCgaAga12AY.430.000004
ORF1ab/nsp12197R197RcgAcgC12AY.430.000004
ORF1ab/nsp12197R197QcGacAa22AY.450.000243
ORF1ab/nsp12197R197QcGacAa22AY.50.000041
ORF1ab/nsp12197R197RcgAcgG12AY.50.000021
ORF1ab/nsp12197R197RCgaAga12AY.50.000021
ORF1ab/nsp12197R197RcgAcgC12AY.750.000056
ORF1ab/nsp12197R197RcgAcgT12AY.750.000056
ORF1ab/nsp12197R197QcGacAa22AY.75.10.000361
ORF1ab/nsp12197R197delCGA---22AY.990.002099
ORF1ab/nsp12197R197RcgAcgG22AZ.60.016807
ORF1ab/nsp12197R197GCgAGgG12B.10.000009
ORF1ab/nsp12197R197GCgaGga12B.10.000009
ORF1ab/nsp12197R197del1cgAcg-12B.10.000009
ORF1ab/nsp12197R197del1cGac-a12B.10.000009
ORF1ab/nsp12197R197QcGacAa22B.1.1.2770.001517
ORF1ab/nsp12197R197XCgaTga22B.1.1600.000062
ORF1ab/nsp12197R197QcGacAa22B.1.20.000018
ORF1ab/nsp12197R197RcgAcgC12B.1.2430.00007
ORF1ab/nsp12197R197RcgAcgG12B.1.2430.00007
ORF1ab/nsp12197R197RCgaAga22B.1.2580.000133
ORF1ab/nsp12197R197RcgAcgG22B.1.3430.041667
ORF1ab/nsp12197R197QcGacAa22B.1.3510.000059
ORF1ab/nsp12197R197delCGA---22B.1.5250.000226
ORF1ab/nsp12197R197RcgAcgG12B.1.5260.000024
ORF1ab/nsp12197R197RCgaAga12B.1.5260.000024
ORF1ab/nsp12197R197LcGacTa22P.1.170.000324
ORF1ab/nsp12197R197RcgAcgC22Q.70.002222
ORF1ab/nsp12197R197RCgaAga22R.10.00018
ORF1ab/nsp12197R197LcGacTa11A0.000387
ORF1ab/nsp12197R197PcGacCa11All0
ORF1ab/nsp12197R197QcGacAa11AY.100.00053
ORF1ab/nsp12197R197RCgaAga11AY.1010.00049
ORF1ab/nsp12197R197QcGacAa11AY.1170.000085
ORF1ab/nsp12197R197RcgAcgG11AY.1190.000035
ORF1ab/nsp12197R197QcGacAa11AY.120.000316
ORF1ab/nsp12197R197RCgaAga11AY.1200.000037
ORF1ab/nsp12197R197QcGacAa11AY.1210.000135
ORF1ab/nsp12197R197RcgAcgC11AY.1210.000135
ORF1ab/nsp12197R197QcGacAa11AY.130.000161
ORF1ab/nsp12197R197LcGacTa11AY.230.00007
ORF1ab/nsp12197R197QcGacAa11AY.260.000028
ORF1ab/nsp12197R197LcGacTa11AY.290.000016
ORF1ab/nsp12197R197LcGacTa11AY.360.000148
ORF1ab/nsp12197R197RcgAcgG11AY.380.000499
ORF1ab/nsp12197R197RcgAcgG11AY.390.000025
ORF1ab/nsp12197R197QcGacAa11AY.390.000025
ORF1ab/nsp12197R197LcGacTa11AY.390.000025
ORF1ab/nsp12197R197LcGacTa11AY.410.000294
ORF1ab/nsp12197R197LcGacTa11AY.430.000004
ORF1ab/nsp12197R197QcGacAa11AY.46.10.001027
ORF1ab/nsp12197R197LcGacTa11AY.50.000021
ORF1ab/nsp12197R197LcGacTa11AY.610.000105
ORF1ab/nsp12197R197delCGA---11AY.650.000533
ORF1ab/nsp12197R197QcGacAa11AY.840.000437
ORF1ab/nsp12197R197delCGA---11AY.90.000068
ORF1ab/nsp12197R197QcGacAa11AY.930.000273
ORF1ab/nsp12197R197QcGacAa11AY.980.000079
ORF1ab/nsp12197R197QcGacAa11AY.98.10.000048
ORF1ab/nsp12197R197LcGacTa11AY.99.10.001553
ORF1ab/nsp12197R197QcGacAa11AY.99.20.000092
ORF1ab/nsp12197R197XCgaTga11B0.000128
ORF1ab/nsp12197R197delCGA---11B0.000128
ORF1ab/nsp12197R197ECGaGAa11B0.000128
ORF1ab/nsp12197R197XCgaTga11B.10.000009
ORF1ab/nsp12197R197delCGA---11B.10.000009
ORF1ab/nsp12197R197QcGacAa11B.1.10.000018
ORF1ab/nsp12197R197del1cgAcg-11B.1.10.000018
ORF1ab/nsp12197R197delCGA---11B.1.1.10.000327
ORF1ab/nsp12197R197PcGacCa11B.1.1.1190.034483
ORF1ab/nsp12197R197QcGacAa11B.1.1.1530.001095
ORF1ab/nsp12197R197delCGA---11B.1.1.3150.008475
ORF1ab/nsp12197R197QcGacAa11B.1.1.3390.010526
ORF1ab/nsp12197R197delCGA---11B.1.1.4090.002833
ORF1ab/nsp12197R197XCgaTga11B.1.1.70.000001
ORF1ab/nsp12197R197LcGacTa11B.1.1600.000031
ORF1ab/nsp12197R197LcGacTa11B.1.1770.000013
ORF1ab/nsp12197R197delCGA---11B.1.1770.000013
ORF1ab/nsp12197R197RcgAcgG11B.1.1770.000013
ORF1ab/nsp12197R197LcGacTa11B.1.177.170.000821
ORF1ab/nsp12197R197QcGacAa11B.1.177.210.000076
ORF1ab/nsp12197R197QcGacAa11B.1.177.450.000381
ORF1ab/nsp12197R197RcgAcgG11B.1.177.570.000281
ORF1ab/nsp12197R197QcGacAa11B.1.177.650.000665
ORF1ab/nsp12197R197LcGacTa11B.1.20.000009
ORF1ab/nsp12197R197delCGA---11B.1.20.000009
ORF1ab/nsp12197R197QcGacAa11B.1.2210.000071
ORF1ab/nsp12197R197XCgaTga11B.1.2430.00007
ORF1ab/nsp12197R197RcgAcgC11B.1.258.170.000104
ORF1ab/nsp12197R197XCgaTga11B.1.2600.003344
ORF1ab/nsp12197R197RcgAcgC11B.1.3510.00003
ORF1ab/nsp12197R197QcGacAa11B.1.3890.001002
ORF1ab/nsp12197R197RcgAcgG11B.1.4290.000024
ORF1ab/nsp12197R197del1cgAcg-11B.1.4290.000024
ORF1ab/nsp12197R197QcGacAa11B.1.4290.000024
ORF1ab/nsp12197R197QcGacAa11B.1.5250.000113
ORF1ab/nsp12197R197QcGacAa11B.1.5960.000087
ORF1ab/nsp12197R197delCGA---11B.1.617.10.000129
ORF1ab/nsp12197R197delCGA---11B.1.617.20.000004
ORF1ab/nsp12197R197ECGaGAa11B.1.617.20.000004
ORF1ab/nsp12197R197QcGacAa11B.1.6210.000089
ORF1ab/nsp12197R197delCGA---11B.340.013699
ORF1ab/nsp12197R197delCGA---11B.550.00295
ORF1ab/nsp12197R197RCgaAga11B.6.60.000889
ORF1ab/nsp12197R197QcGacAa11D.20.000075
ORF1ab/nsp12197R197LcGacTa11P.1.150.000232
ORF1ab/nsp12197R197QcGacAa11P.30.001595