CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 192

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12192F192VF4584VnonsynTtcGtc1645661645570.99994514014-14016
ORF1ab/nsp12192F192VF4584VnonsynTtCGtT16456680.000048612714014-14016
ORF1ab/nsp12192F192VF4584VnonsynTtCGtA16456610.0000060765914014-14016
ORF1ab/nsp12192F192FF4584FsynttCttT17421742114014-14016
ORF1ab/nsp12192F192LF4584LnonsynTtcCtc3643330.91483514014-14016
ORF1ab/nsp12192F192LF4584LnonsynttCttA364240.065934114014-14016
ORF1ab/nsp12192F192LF4584LnonsynttCttG36460.016483514014-14016
ORF1ab/nsp12192F192LF4584LnonsynTtCCtT36410.0027472514014-14016
ORF1ab/nsp12192F192IF4584InonsynTtcAtc8181114014-14016
ORF1ab/nsp12192F192delF4584deldelTTC---2020114014-14016
ORF1ab/nsp12192F192YF4584YnonsyntTctAc1818114014-14016
ORF1ab/nsp12192F192SF4584SnonsyntTctCc55114014-14016
ORF1ab/nsp12192F192CF4584CnonsyntTctGc55114014-14016
ORF1ab/nsp12192F192del1F4584del1delTtc-tc210.514014-14016
ORF1ab/nsp12192F192del1F4584del1delttCtt-210.514014-14016
ORF1ab/nsp12192F192del2F4584del2deltTCt--11114014-14016
ORF1ab/nsp12192F192QF4584QnonsynTTCCAA11114014-14016
ORF1ab/nsp12192F192AF4584AnonsynTTcGCc11114014-14016
ORF1ab/nsp12192F192PF4584PnonsynTTcCCc11114014-14016

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12192F192VTtcGtc164557164566All0.031473
ORF1ab/nsp12192F192VTtCGtT8164566All0.000002
ORF1ab/nsp12192F192VTtCGtA1164566All0
ORF1ab/nsp12192F192VTtcGtc153317153326AY.440.933204
ORF1ab/nsp12192F192VTtCGtT8153326AY.440.000049
ORF1ab/nsp12192F192VTtCGtA1153326AY.440.000006
ORF1ab/nsp12192F192VTtcGtc1080710807B.1.617.20.040693
ORF1ab/nsp12192F192FttCttT17421742All0.000333
ORF1ab/nsp12192F192FttCttT502502B.1.5650.406807
ORF1ab/nsp12192F192LTtcCtc333364All0.000064
ORF1ab/nsp12192F192LttCttA24364All0.000005
ORF1ab/nsp12192F192LttCttG6364All0.000001
ORF1ab/nsp12192F192LTtCCtT1364All0
ORF1ab/nsp12192F192FttCttT297297B.1.20.002615
ORF1ab/nsp12192F192FttCttT254254B.1.1.70.000227
ORF1ab/nsp12192F192FttCttT217217P.10.003419
ORF1ab/nsp12192F192LTtcCtc111111AY.7.10.01251
ORF1ab/nsp12192F192LTtcCtc9699AY.40.000149
ORF1ab/nsp12192F192LttCttA299AY.40.000003
ORF1ab/nsp12192F192LttCttG199AY.40.000002
ORF1ab/nsp12192F192ITtcAtc8181All0.000015
ORF1ab/nsp12192F192VTtcGtc7373AY.1170.00617
ORF1ab/nsp12192F192FttCttT6969AY.670.032033
ORF1ab/nsp12192F192VTtcGtc5050AY.1030.00031
ORF1ab/nsp12192F192FttCttT4141AY.40.000064
ORF1ab/nsp12192F192VTtcGtc3535AY.390.000865
ORF1ab/nsp12192F192ITtcAtc3030AY.40.000047
ORF1ab/nsp12192F192LTtcCtc2630B.1.1.70.000023
ORF1ab/nsp12192F192LttCttA330B.1.1.70.000003
ORF1ab/nsp12192F192LTtCCtT130B.1.1.70.000001
ORF1ab/nsp12192F192FttCttT2929B.1.617.20.000109
ORF1ab/nsp12192F192VTtcGtc2727AY.450.003285
ORF1ab/nsp12192F192FttCttT2727B.10.000247
ORF1ab/nsp12192F192FttCttT2626AY.430.000115
ORF1ab/nsp12192F192VTtcGtc2424AY.250.000144
ORF1ab/nsp12192F192LTtcCtc2224B.1.20.000194
ORF1ab/nsp12192F192LttCttG124B.1.20.000009
ORF1ab/nsp12192F192LttCttA124B.1.20.000009
ORF1ab/nsp12192F192FttCttT2323AY.200.000894
ORF1ab/nsp12192F192ITtcAtc2222AY.4.50.002365
ORF1ab/nsp12192F192VTtcGtc2121AY.750.001176
ORF1ab/nsp12192F192delTTC---2020All0.000004
ORF1ab/nsp12192F192YtTctAc1818All0.000003
ORF1ab/nsp12192F192VTtcGtc1818AY.460.001873
ORF1ab/nsp12192F192VTtcGtc1717AY.540.001621
ORF1ab/nsp12192F192VTtcGtc1616B.10.000147
ORF1ab/nsp12192F192FttCttT1616B.1.4290.000376
ORF1ab/nsp12192F192VTtcGtc1515AY.1190.00053
ORF1ab/nsp12192F192VTtcGtc1515AY.930.004096
ORF1ab/nsp12192F192FttCttT1414B.1.10.000254
ORF1ab/nsp12192F192FttCttT1313AY.250.000078
ORF1ab/nsp12192F192LTtcCtc1313B.1.1770.000171
ORF1ab/nsp12192F192VTtcGtc1212AY.260.00034
ORF1ab/nsp12192F192LTtcCtc1111B.1.1.500.007468
ORF1ab/nsp12192F192FttCttT1111B.1.1110.012926
ORF1ab/nsp12192F192VTtcGtc1111P.10.000173
ORF1ab/nsp12192F192YtTctAc1010AY.1210.001353
ORF1ab/nsp12192F192VTtcGtc99AY.430.00004
ORF1ab/nsp12192F192FttCttT88AY.470.000249
ORF1ab/nsp12192F192LttCttA48B.10.000037
ORF1ab/nsp12192F192LTtcCtc28B.10.000018
ORF1ab/nsp12192F192LttCttG28B.10.000018
ORF1ab/nsp12192F192FttCttT88B.1.1.440.019277
ORF1ab/nsp12192F192FttCttT77AY.420.000282
ORF1ab/nsp12192F192FttCttT77B.1.1770.000092
ORF1ab/nsp12192F192FttCttT77B.1.3110.001922
ORF1ab/nsp12192F192VTtcGtc66AY.1000.000276
ORF1ab/nsp12192F192LTtcCtc66AY.290.000095
ORF1ab/nsp12192F192FttCttT66AY.4.20.00013
ORF1ab/nsp12192F192ITtcAtc66AY.440.000037
ORF1ab/nsp12192F192VTtcGtc66AY.910.004383
ORF1ab/nsp12192F192LTtcCtc66B.1.3510.000178
ORF1ab/nsp12192F192FttCttT66B.1.5960.000523
ORF1ab/nsp12192F192FttCttT66B.1.6370.000438
ORF1ab/nsp12192F192FttCttT66B.3.10.00995
ORF1ab/nsp12192F192StTctCc55All0.000001
ORF1ab/nsp12192F192CtTctGc55All0.000001
ORF1ab/nsp12192F192LTtcCtc45AY.1020.000106
ORF1ab/nsp12192F192LttCttA15AY.1020.000027
ORF1ab/nsp12192F192VTtcGtc55AY.1180.000313
ORF1ab/nsp12192F192FttCttT55AY.30.00005
ORF1ab/nsp12192F192delTTC---55B.1.1.70.000004
ORF1ab/nsp12192F192VTtcGtc55B.1.1.70.000004
ORF1ab/nsp12192F192FttCttT55B.1.1390.003666
ORF1ab/nsp12192F192FttCttT55B.1.2580.000333
ORF1ab/nsp12192F192LTtcCtc45B.1.617.20.000015
ORF1ab/nsp12192F192LttCttA15B.1.617.20.000004
ORF1ab/nsp12192F192FttCttT55B.6.60.004444
ORF1ab/nsp12192F192FttCttT55N.50.008834
ORF1ab/nsp12192F192LTtcCtc44AY.1000.000184
ORF1ab/nsp12192F192VTtcGtc44AY.1020.000106
ORF1ab/nsp12192F192FttCttT44AY.1020.000106
ORF1ab/nsp12192F192VTtcGtc44AY.1160.001147
ORF1ab/nsp12192F192FttCttT44AY.1190.000141
ORF1ab/nsp12192F192FttCttT44AY.140.000352
ORF1ab/nsp12192F192VTtcGtc44AY.200.000155
ORF1ab/nsp12192F192VTtcGtc44AY.30.00004
ORF1ab/nsp12192F192FttCttT44AY.4.50.00043
ORF1ab/nsp12192F192VTtcGtc44AY.50.000083
ORF1ab/nsp12192F192ITtcAtc44AY.80.002424
ORF1ab/nsp12192F192ITtcAtc44AY.90.00027
ORF1ab/nsp12192F192VTtcGtc44B.1.20.000035
ORF1ab/nsp12192F192FttCttT44B.1.3780.027397
ORF1ab/nsp12192F192CtTctGc44B.1.4250.011976
ORF1ab/nsp12192F192YtTctAc44B.1.617.20.000015
ORF1ab/nsp12192F192FttCttT33AD.20.000657
ORF1ab/nsp12192F192FttCttT33AY.130.000483
ORF1ab/nsp12192F192LttCttA23AY.440.000012
ORF1ab/nsp12192F192LTtcCtc13AY.440.000006
ORF1ab/nsp12192F192VTtcGtc33AY.46.60.000217
ORF1ab/nsp12192F192VTtcGtc33AY.470.000093
ORF1ab/nsp12192F192VTtcGtc33AY.650.001599
ORF1ab/nsp12192F192ITtcAtc33B.1.1.1760.001318
ORF1ab/nsp12192F192FttCttT33B.1.177.440.001557
ORF1ab/nsp12192F192FttCttT33B.1.2210.000213
ORF1ab/nsp12192F192FttCttT33B.1.2340.000396
ORF1ab/nsp12192F192FttCttT33B.1.3510.000089
ORF1ab/nsp12192F192FttCttT33B.1.360.000438
ORF1ab/nsp12192F192VTtcGtc33B.1.5960.000261
ORF1ab/nsp12192F192FttCttT33B.1.5970.013889
ORF1ab/nsp12192F192LTtcCtc33B.1.6280.001057
ORF1ab/nsp12192F192FttCttT33D.20.000225
ORF1ab/nsp12192F192LTtcCtc33P.1.170.000485
ORF1ab/nsp12192F192del1ttCtt-12All0
ORF1ab/nsp12192F192del1Ttc-tc12All0
ORF1ab/nsp12192F192FttCttT22AY.1030.000012
ORF1ab/nsp12192F192FttCttT22AY.1130.000285
ORF1ab/nsp12192F192ITtcAtc22AY.1200.000074
ORF1ab/nsp12192F192VTtcGtc22AY.16.10.00094
ORF1ab/nsp12192F192FttCttT22AY.260.000057
ORF1ab/nsp12192F192FttCttT22AY.330.000134
ORF1ab/nsp12192F192LTtcCtc22AY.390.000049
ORF1ab/nsp12192F192FttCttT22AY.39.10.000079
ORF1ab/nsp12192F192VTtcGtc22AY.40.000003
ORF1ab/nsp12192F192FttCttT22AY.400.001929
ORF1ab/nsp12192F192LttCttA22AY.430.000009
ORF1ab/nsp12192F192FttCttT22AY.50.000041
ORF1ab/nsp12192F192ITtcAtc22AY.580.001815
ORF1ab/nsp12192F192VTtcGtc22AY.620.000871
ORF1ab/nsp12192F192VTtcGtc22AY.680.000547
ORF1ab/nsp12192F192VTtcGtc22AY.700.000417
ORF1ab/nsp12192F192FttCttT22AY.840.000875
ORF1ab/nsp12192F192VTtcGtc22AY.840.000875
ORF1ab/nsp12192F192LTtcCtc12B0.000128
ORF1ab/nsp12192F192LttCttA12B0.000128
ORF1ab/nsp12192F192FttCttT22B.1.1.2840.000215
ORF1ab/nsp12192F192FttCttT22B.1.1.3170.000823
ORF1ab/nsp12192F192FttCttT22B.1.1.3980.006452
ORF1ab/nsp12192F192FttCttT22B.1.1.5190.000079
ORF1ab/nsp12192F192FttCttT22B.1.1600.000062
ORF1ab/nsp12192F192delTTC---22B.1.5250.000226
ORF1ab/nsp12192F192delTTC---22B.1.617.20.000008
ORF1ab/nsp12192F192LTtcCtc22N.90.011905
ORF1ab/nsp12192F192FttCttT22P.1.150.000465
ORF1ab/nsp12192F192del2tTCt--11A0.000387
ORF1ab/nsp12192F192LttCttA11A0.000387
ORF1ab/nsp12192F192StTctCc11A.2.20.001689
ORF1ab/nsp12192F192QTTCCAA11All0
ORF1ab/nsp12192F192ATTcGCc11All0
ORF1ab/nsp12192F192del2tTCt--11All0
ORF1ab/nsp12192F192PTTcCCc11All0
ORF1ab/nsp12192F192YtTctAc11AY.1020.000027
ORF1ab/nsp12192F192StTctCc11AY.1090.00074
ORF1ab/nsp12192F192VTtcGtc11AY.1130.000142
ORF1ab/nsp12192F192LTtcCtc11AY.1180.000063
ORF1ab/nsp12192F192LTtcCtc11AY.1190.000035
ORF1ab/nsp12192F192LttCttA11AY.1200.000037
ORF1ab/nsp12192F192FttCttT11AY.1200.000037
ORF1ab/nsp12192F192FttCttT11AY.120.2.10.000498
ORF1ab/nsp12192F192VTtcGtc11AY.130.000161
ORF1ab/nsp12192F192ITtcAtc11AY.170.008197
ORF1ab/nsp12192F192VTtcGtc11AY.230.00007
ORF1ab/nsp12192F192FttCttT11AY.230.00007
ORF1ab/nsp12192F192ITtcAtc11AY.250.000006
ORF1ab/nsp12192F192LTtcCtc11AY.260.000028
ORF1ab/nsp12192F192ITtcAtc11AY.30.00001
ORF1ab/nsp12192F192VTtcGtc11AY.3.10.000085
ORF1ab/nsp12192F192VTtcGtc11AY.330.000067
ORF1ab/nsp12192F192FttCttT11AY.340.000097
ORF1ab/nsp12192F192VTtcGtc11AY.340.000097
ORF1ab/nsp12192F192delTTC---11AY.350.000233
ORF1ab/nsp12192F192FttCttT11AY.360.000148
ORF1ab/nsp12192F192VTtcGtc11AY.380.000499
ORF1ab/nsp12192F192FttCttT11AY.390.000025
ORF1ab/nsp12192F192LTtcCtc11AY.4.50.000107
ORF1ab/nsp12192F192ATTcGCc11AY.440.000006
ORF1ab/nsp12192F192LTtcCtc11AY.470.000031
ORF1ab/nsp12192F192LttCttA11AY.50.000021
ORF1ab/nsp12192F192LTtcCtc11AY.60.000041
ORF1ab/nsp12192F192FttCttT11AY.610.000105
ORF1ab/nsp12192F192LTtcCtc11AY.640.000595
ORF1ab/nsp12192F192delTTC---11AY.650.000533
ORF1ab/nsp12192F192FttCttT11AY.70.000196
ORF1ab/nsp12192F192FttCttT11AY.750.000056
ORF1ab/nsp12192F192delTTC---11AY.75.10.00018
ORF1ab/nsp12192F192VTtcGtc11AY.75.10.00018
ORF1ab/nsp12192F192ITtcAtc11AY.870.000833
ORF1ab/nsp12192F192LTtcCtc11AY.90.000068
ORF1ab/nsp12192F192VTtcGtc11AY.9.20.000037
ORF1ab/nsp12192F192VTtcGtc11AY.920.000287
ORF1ab/nsp12192F192FttCttT11AY.930.000273
ORF1ab/nsp12192F192VTtcGtc11AY.960.002075
ORF1ab/nsp12192F192VTtcGtc11AY.980.000079
ORF1ab/nsp12192F192delTTC---11AY.990.001049
ORF1ab/nsp12192F192FttCttT11AY.99.20.000092
ORF1ab/nsp12192F192del1ttCtt-11B.10.000009
ORF1ab/nsp12192F192YtTctAc11B.10.000009
ORF1ab/nsp12192F192LTtcCtc11B.1.10.000018
ORF1ab/nsp12192F192StTctCc11B.1.10.000018
ORF1ab/nsp12192F192VTtcGtc11B.1.10.000018
ORF1ab/nsp12192F192FttCttT11B.1.1.10.000327
ORF1ab/nsp12192F192delTTC---11B.1.1.10.000327
ORF1ab/nsp12192F192FttCttT11B.1.1.1760.000439
ORF1ab/nsp12192F192FttCttT11B.1.1.2100.005714
ORF1ab/nsp12192F192FttCttT11B.1.1.2140.000055
ORF1ab/nsp12192F192FttCttT11B.1.1.3150.008475
ORF1ab/nsp12192F192delTTC---11B.1.1.3150.008475
ORF1ab/nsp12192F192FttCttT11B.1.1.3260.001761
ORF1ab/nsp12192F192FttCttT11B.1.1.3540.004386
ORF1ab/nsp12192F192delTTC---11B.1.1.4090.002833
ORF1ab/nsp12192F192YtTctAc11B.1.1.70.000001
ORF1ab/nsp12192F192StTctCc11B.1.1.70.000001
ORF1ab/nsp12192F192ITtcAtc11B.1.1.70.000001
ORF1ab/nsp12192F192FttCttT11B.1.110.30.000718
ORF1ab/nsp12192F192FttCttT11B.1.160.220.006757
ORF1ab/nsp12192F192delTTC---11B.1.1770.000013
ORF1ab/nsp12192F192LTtcCtc11B.1.177.160.000664
ORF1ab/nsp12192F192YtTctAc11B.1.177.160.000664
ORF1ab/nsp12192F192CtTctGc11B.1.177.40.000211
ORF1ab/nsp12192F192LTtcCtc11B.1.177.600.000218
ORF1ab/nsp12192F192FttCttT11B.1.177.650.000665
ORF1ab/nsp12192F192FttCttT11B.1.177.770.000726
ORF1ab/nsp12192F192delTTC---11B.1.20.000009
ORF1ab/nsp12192F192del1Ttc-tc11B.1.20.000009
ORF1ab/nsp12192F192LTtcCtc11B.1.2050.02381
ORF1ab/nsp12192F192FttCttT11B.1.214.30.007143
ORF1ab/nsp12192F192FttCttT11B.1.2430.00007
ORF1ab/nsp12192F192VTtcGtc11B.1.2430.00007
ORF1ab/nsp12192F192LttCttA11B.1.3010.005917
ORF1ab/nsp12192F192ITtcAtc11B.1.3110.000275
ORF1ab/nsp12192F192FttCttT11B.1.3200.001245
ORF1ab/nsp12192F192FttCttT11B.1.3490.000715
ORF1ab/nsp12192F192VTtcGtc11B.1.3550.011111
ORF1ab/nsp12192F192FttCttT11B.1.3690.000285
ORF1ab/nsp12192F192LTtcCtc11B.1.4270.00005
ORF1ab/nsp12192F192FttCttT11B.1.4270.00005
ORF1ab/nsp12192F192FttCttT11B.1.4650.003802
ORF1ab/nsp12192F192FttCttT11B.1.466.20.000391
ORF1ab/nsp12192F192FttCttT11B.1.4730.019231
ORF1ab/nsp12192F192FttCttT11B.1.5260.000024
ORF1ab/nsp12192F192VTtcGtc11B.1.5260.000024
ORF1ab/nsp12192F192FttCttT11B.1.5640.000426
ORF1ab/nsp12192F192LttCttG11B.1.5710.009709
ORF1ab/nsp12192F192StTctCc11B.1.5770.000687
ORF1ab/nsp12192F192VTtcGtc11B.1.5820.000491
ORF1ab/nsp12192F192FttCttT11B.1.5950.000261
ORF1ab/nsp12192F192LttCttA11B.1.5960.000087
ORF1ab/nsp12192F192ITtcAtc11B.1.5990.00365
ORF1ab/nsp12192F192FttCttT11B.1.6090.000479
ORF1ab/nsp12192F192delTTC---11B.1.617.10.000129
ORF1ab/nsp12192F192FttCttT11B.1.617.10.000129
ORF1ab/nsp12192F192ITtcAtc11B.1.617.20.000004
ORF1ab/nsp12192F192QTTCCAA11B.1.617.20.000004
ORF1ab/nsp12192F192PTTcCCc11B.1.617.20.000004
ORF1ab/nsp12192F192LttCttG11B.1.617.30.002985
ORF1ab/nsp12192F192LTtcCtc11B.1.6210.000089
ORF1ab/nsp12192F192LttCttA11B.1.6230.000536
ORF1ab/nsp12192F192delTTC---11B.340.013699
ORF1ab/nsp12192F192LttCttA11B.6.60.000889
ORF1ab/nsp12192F192FttCttT11C.10.002392
ORF1ab/nsp12192F192FttCttT11C.370.000116
ORF1ab/nsp12192F192FttCttT11L.30.003546
ORF1ab/nsp12192F192VTtcGtc11P.1.10.000318
ORF1ab/nsp12192F192VTtcGtc11P.1.120.000484
ORF1ab/nsp12192F192FttCttT11P.1.120.000484
ORF1ab/nsp12192F192LTtcCtc11P.1.120.000484
ORF1ab/nsp12192F192VTtcGtc11P.1.130.000898
ORF1ab/nsp12192F192FttCttT11Q.30.000145
ORF1ab/nsp12192F192LTtcCtc11Q.40.000455
ORF1ab/nsp12192F192FttCttT11Q.40.000455