CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 185

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12185A185SA4577SnonsynGctTct38777387760.99997413993-13995
ORF1ab/nsp12185A185SA4577SnonsynGcTTcC3877710.000025788513993-13995
ORF1ab/nsp12185A185VA4577VnonsyngCtgTt760376020.99986813993-13995
ORF1ab/nsp12185A185VA4577VnonsyngCTgTG760310.00013152713993-13995
ORF1ab/nsp12185A185AA4577AsyngcTgcG189214220.75158613993-13995
ORF1ab/nsp12185A185AA4577AsyngcTgcC18924010.21194513993-13995
ORF1ab/nsp12185A185AA4577AsyngcTgcA1892690.036469313993-13995
ORF1ab/nsp12185A185TA4577TnonsynGctAct84830.98809513993-13995
ORF1ab/nsp12185A185TA4577TnonsynGcTAcA8410.011904813993-13995
ORF1ab/nsp12185A185delA4577deldelGCT---2525113993-13995
ORF1ab/nsp12185A185PA4577PnonsynGctCct13120.92307713993-13995
ORF1ab/nsp12185A185PA4577PnonsynGcTCcA1310.076923113993-13995
ORF1ab/nsp12185A185del1A4577del1delGct-ct1260.513993-13995
ORF1ab/nsp12185A185del1A4577del1delgcTgc-1260.513993-13995
ORF1ab/nsp12185A185DA4577DnonsyngCtgAt33113993-13995
ORF1ab/nsp12185A185GA4577GnonsyngCtgGt320.66666713993-13995
ORF1ab/nsp12185A185GA4577GnonsyngCTgGA310.33333313993-13995
ORF1ab/nsp12185A185EA4577EnonsyngCTgAA22113993-13995
ORF1ab/nsp12185A185RA4577RnonsynGCTCGA210.513993-13995
ORF1ab/nsp12185A185RA4577RnonsynGCtCGt210.513993-13995
ORF1ab/nsp12185A185LA4577LnonsynGCtCTt11113993-13995
ORF1ab/nsp12185A185del2A4577del2delGCt--t11113993-13995
ORF1ab/nsp12185A185YA4577YnonsynGCtTAt11113993-13995

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12185A185SGctTct3877638777All0.007416
ORF1ab/nsp12185A185SGcTTcC138777All0
ORF1ab/nsp12185A185SGctTct3019930199B.1.1600.941835
ORF1ab/nsp12185A185VgCtgTt76027603All0.001454
ORF1ab/nsp12185A185VgCTgTG17603All0
ORF1ab/nsp12185A185AgcTgcG14221892All0.000272
ORF1ab/nsp12185A185AgcTgcC4011892All0.000077
ORF1ab/nsp12185A185AgcTgcA691892All0.000013
ORF1ab/nsp12185A185VgCtgTt15481548AY.40.002409
ORF1ab/nsp12185A185AgcTgcG14021464B.1.1.70.001255
ORF1ab/nsp12185A185AgcTgcC491464B.1.1.70.000044
ORF1ab/nsp12185A185AgcTgcA131464B.1.1.70.000012
ORF1ab/nsp12185A185SGctTct10431043B.1.160.160.969331
ORF1ab/nsp12185A185VgCtgTt961961AY.250.00578
ORF1ab/nsp12185A185VgCtgTt790791B.1.1.70.000707
ORF1ab/nsp12185A185VgCTgTG1791B.1.1.70.000001
ORF1ab/nsp12185A185SGctTct774774B.1.160.80.997423
ORF1ab/nsp12185A185SGctTct588588B.1.160.171
ORF1ab/nsp12185A185SGctTct481481B.1.160.71
ORF1ab/nsp12185A185SGctTct465465B.1.160.140.985169
ORF1ab/nsp12185A185VgCtgTt455455B.1.3050.978495
ORF1ab/nsp12185A185SGctTct412412B.1.160.260.997579
ORF1ab/nsp12185A185VgCtgTt395395AY.290.006231
ORF1ab/nsp12185A185SGctTct327327B.1.160.280.95614
ORF1ab/nsp12185A185VgCtgTt306306B.1.617.20.001152
ORF1ab/nsp12185A185SGctTct247247B.10.002262
ORF1ab/nsp12185A185SGctTct233233B.1.160.290.983122
ORF1ab/nsp12185A185SGctTct226226B.1.160.241
ORF1ab/nsp12185A185SGctTct225225B.1.160.330.995575
ORF1ab/nsp12185A185SGctTct207207B.1.160.231
ORF1ab/nsp12185A185SGctTct202202B.1.160.151
ORF1ab/nsp12185A185SGctTct201201B.1.160.300.598214
ORF1ab/nsp12185A185SGctTct188188B.1.160.320.806867
ORF1ab/nsp12185A185VgCtgTt177177B.1.20.001559
ORF1ab/nsp12185A185SGctTct175175B.1.160.111
ORF1ab/nsp12185A185VgCtgTt171171AY.1030.001062
ORF1ab/nsp12185A185AgcTgcC143168AY.30.001422
ORF1ab/nsp12185A185AgcTgcA25168AY.30.000249
ORF1ab/nsp12185A185VgCtgTt165165B.1.2340.021771
ORF1ab/nsp12185A185VgCtgTt163163B.10.001493
ORF1ab/nsp12185A185VgCtgTt162162AY.390.004003
ORF1ab/nsp12185A185SGctTct159159AY.40.000247
ORF1ab/nsp12185A185SGctTct156156B.1.160.121
ORF1ab/nsp12185A185SGctTct147147B.1.160.220.993243
ORF1ab/nsp12185A185SGctTct138138B.1.1.70.000124
ORF1ab/nsp12185A185SGctTct137137B.1.160.181
ORF1ab/nsp12185A185SGctTct137137B.1.160.90.985612
ORF1ab/nsp12185A185VgCtgTt137137B.1.4270.006918
ORF1ab/nsp12185A185VgCtgTt136136AY.330.009082
ORF1ab/nsp12185A185SGctTct135135B.1.617.20.000508
ORF1ab/nsp12185A185SGctTct124124B.1.160.311
ORF1ab/nsp12185A185SGctTct121121AB.10.991803
ORF1ab/nsp12185A185SGctTct117117B.1.160.100.943548
ORF1ab/nsp12185A185VgCtgTt116116B.1.5260.002727
ORF1ab/nsp12185A185VgCtgTt115115AY.430.00051
ORF1ab/nsp12185A185VgCtgTt113113AY.440.000688
ORF1ab/nsp12185A185VgCtgTt106106AY.46.60.007654
ORF1ab/nsp12185A185SGctTct9090B.1.160.251
ORF1ab/nsp12185A185VgCtgTt8989B.1.1.2910.066073
ORF1ab/nsp12185A185TGctAct8384All0.000016
ORF1ab/nsp12185A185TGcTAcA184All0
ORF1ab/nsp12185A185SGctTct8181B.1.160.200.723214
ORF1ab/nsp12185A185SGctTct7575B.1.10.001361
ORF1ab/nsp12185A185VgCtgTt7070P.10.001103
ORF1ab/nsp12185A185VgCtgTt6767B.1.2390.081807
ORF1ab/nsp12185A185VgCtgTt6666AY.230.004603
ORF1ab/nsp12185A185SGctTct6666B.1.160.271
ORF1ab/nsp12185A185SGctTct5959B.1.1770.000777
ORF1ab/nsp12185A185SGctTct5757B.1.2210.004049
ORF1ab/nsp12185A185SGctTct5454B.1.177.310.62069
ORF1ab/nsp12185A185VgCtgTt5353B.1.1770.000698
ORF1ab/nsp12185A185VgCtgTt5050AY.30.000497
ORF1ab/nsp12185A185AgcTgcC4650B.1.20.000405
ORF1ab/nsp12185A185AgcTgcA350B.1.20.000026
ORF1ab/nsp12185A185AgcTgcG150B.1.20.000009
ORF1ab/nsp12185A185VgCtgTt5050B.1.36.10.057013
ORF1ab/nsp12185A185VgCtgTt4949B.1.10.000889
ORF1ab/nsp12185A185SGctTct4949B.1.160.211
ORF1ab/nsp12185A185VgCtgTt4545AY.710.021378
ORF1ab/nsp12185A185AgcTgcC4040AY.430.000177
ORF1ab/nsp12185A185VgCtgTt3939AY.1020.001034
ORF1ab/nsp12185A185SGctTct3939AY.440.000237
ORF1ab/nsp12185A185SGctTct3636B.1.160.131
ORF1ab/nsp12185A185VgCtgTt3030AY.470.000933
ORF1ab/nsp12185A185SGctTct3030B.1.177.440.015568
ORF1ab/nsp12185A185VgCtgTt3030B.1.2400.006467
ORF1ab/nsp12185A185SGctTct2828B.1.160.191
ORF1ab/nsp12185A185VgCtgTt2626AY.820.035278
ORF1ab/nsp12185A185delGCT---2525All0.000005
ORF1ab/nsp12185A185SGctTct2525B.1.1.4450.925926
ORF1ab/nsp12185A185VgCtgTt2424AY.750.001345
ORF1ab/nsp12185A185VgCtgTt2424B.1.1.5190.000953
ORF1ab/nsp12185A185VgCtgTt2323AY.340.00223
ORF1ab/nsp12185A185VgCtgTt2323B.1.4290.000541
ORF1ab/nsp12185A185VgCtgTt2222B.1.5950.005741
ORF1ab/nsp12185A185SGctTct2121AY.30.000209
ORF1ab/nsp12185A185VgCtgTt2121B.1.1.3180.006337
ORF1ab/nsp12185A185SGctTct2020B.1.1.390.010194
ORF1ab/nsp12185A185SGctTct2020B.1.258.110.007927
ORF1ab/nsp12185A185SGctTct1919AY.9.20.000698
ORF1ab/nsp12185A185SGctTct1919B.1.36.160.027066
ORF1ab/nsp12185A185VgCtgTt1818B.1.177.210.001376
ORF1ab/nsp12185A185AgcTgcA1718B.1.2430.001183
ORF1ab/nsp12185A185AgcTgcC118B.1.2430.00007
ORF1ab/nsp12185A185AgcTgcC917AY.250.000054
ORF1ab/nsp12185A185AgcTgcG817AY.250.000048
ORF1ab/nsp12185A185SGctTct1717AY.430.000075
ORF1ab/nsp12185A185VgCtgTt1717B.1.177.810.003218
ORF1ab/nsp12185A185SGctTct1717B.1.2580.001131
ORF1ab/nsp12185A185VgCtgTt1717B.1.2580.001131
ORF1ab/nsp12185A185VgCtgTt1616AY.1190.000565
ORF1ab/nsp12185A185VgCtgTt1616AY.4.50.00172
ORF1ab/nsp12185A185SGctTct1516B.1.20.000132
ORF1ab/nsp12185A185SGcTTcC116B.1.20.000009
ORF1ab/nsp12185A185VgCtgTt1515AY.200.000583
ORF1ab/nsp12185A185SGctTct1515AY.250.00009
ORF1ab/nsp12185A185AgcTgcC1415AY.390.000346
ORF1ab/nsp12185A185AgcTgcG115AY.390.000025
ORF1ab/nsp12185A185VgCtgTt1515B.1.3510.000446
ORF1ab/nsp12185A185SGctTct1414AY.1020.000371
ORF1ab/nsp12185A185VgCtgTt1414AY.460.001457
ORF1ab/nsp12185A185SGctTct1414B.1.5820.006869
ORF1ab/nsp12185A185AgcTgcC1314B.1.617.20.000049
ORF1ab/nsp12185A185AgcTgcA114B.1.617.20.000004
ORF1ab/nsp12185A185VgCtgTt1414P.1.140.000669
ORF1ab/nsp12185A185PGctCct1213All0.000002
ORF1ab/nsp12185A185PGcTCcA113All0
ORF1ab/nsp12185A185VgCtgTt1313AY.260.000368
ORF1ab/nsp12185A185VgCtgTt1313AY.420.000523
ORF1ab/nsp12185A185VgCtgTt1313AY.540.00124
ORF1ab/nsp12185A185VgCtgTt1313B.1.1.2220.002652
ORF1ab/nsp12185A185del1gcTgc-612All0.000001
ORF1ab/nsp12185A185del1Gct-ct612All0.000001
ORF1ab/nsp12185A185VgCtgTt1212AY.50.000248
ORF1ab/nsp12185A185VgCtgTt1212AY.99.20.001106
ORF1ab/nsp12185A185SGctTct1212B.1.1.5190.000477
ORF1ab/nsp12185A185SGctTct1212B.1.177.430.017725
ORF1ab/nsp12185A185SGctTct1212B.1.177.730.006795
ORF1ab/nsp12185A185SGctTct1111AY.1190.000388
ORF1ab/nsp12185A185AgcTgcC1011AY.40.000016
ORF1ab/nsp12185A185AgcTgcA111AY.40.000002
ORF1ab/nsp12185A185VgCtgTt1111AY.450.001339
ORF1ab/nsp12185A185TGctAct1111B.1.1.500.007468
ORF1ab/nsp12185A185VgCtgTt1111B.1.360.001605
ORF1ab/nsp12185A185VgCtgTt1111B.1.5300.078571
ORF1ab/nsp12185A185VgCtgTt1010AY.1090.007396
ORF1ab/nsp12185A185TGctAct1010AY.750.00056
ORF1ab/nsp12185A185TGctAct1010B.1.1.70.000009
ORF1ab/nsp12185A185VgCtgTt1010B.1.2430.000696
ORF1ab/nsp12185A185AgcTgcC1010B.1.5170.00427
ORF1ab/nsp12185A185VgCtgTt1010B.1.6210.000885
ORF1ab/nsp12185A185VgCtgTt99AY.1000.000414
ORF1ab/nsp12185A185VgCtgTt99B.1.1.2750.101124
ORF1ab/nsp12185A185TGctAct99P.10.000142
ORF1ab/nsp12185A185VgCtgTt88AY.3.10.000682
ORF1ab/nsp12185A185VgCtgTt88AY.950.006088
ORF1ab/nsp12185A185AgcTgcC48B.10.000037
ORF1ab/nsp12185A185AgcTgcA48B.10.000037
ORF1ab/nsp12185A185SGctTct88B.1.3460.010485
ORF1ab/nsp12185A185VgCtgTt88B.1.6370.000585
ORF1ab/nsp12185A185VgCtgTt77AU.30.014768
ORF1ab/nsp12185A185AgcTgcC77AY.1030.000043
ORF1ab/nsp12185A185VgCtgTt77AY.1180.000439
ORF1ab/nsp12185A185VgCtgTt77AY.1200.00026
ORF1ab/nsp12185A185SGctTct77AY.230.000488
ORF1ab/nsp12185A185SGctTct77AY.4.20.000152
ORF1ab/nsp12185A185VgCtgTt77AY.980.000553
ORF1ab/nsp12185A185SGctTct77B0.000895
ORF1ab/nsp12185A185VgCtgTt77B.1.1.4320.008861
ORF1ab/nsp12185A185VgCtgTt77B.1.177.80.005267
ORF1ab/nsp12185A185VgCtgTt77B.1.2210.000497
ORF1ab/nsp12185A185VgCtgTt77B.1.5960.00061
ORF1ab/nsp12185A185SGctTct77P.10.00011
ORF1ab/nsp12185A185VgCtgTt66A.2.50.002994
ORF1ab/nsp12185A185VgCtgTt66AY.1210.000812
ORF1ab/nsp12185A185SGctTct66AY.200.000233
ORF1ab/nsp12185A185TGctAct66AY.30.00006
ORF1ab/nsp12185A185VgCtgTt66AY.39.10.000238
ORF1ab/nsp12185A185VgCtgTt66AY.590.003178
ORF1ab/nsp12185A185VgCtgTt66B.1.1.2140.000333
ORF1ab/nsp12185A185VgCtgTt66B.1.1.280.001867
ORF1ab/nsp12185A185VgCtgTt66B.1.1.3690.002677
ORF1ab/nsp12185A185delGCT---66B.1.1.70.000005
ORF1ab/nsp12185A185SGctTct66B.1.3510.000178
ORF1ab/nsp12185A185SGctTct66B.1.36.290.003104
ORF1ab/nsp12185A185SGctTct66B.1.36.80.006
ORF1ab/nsp12185A185VgCtgTt66B.1.466.20.002347
ORF1ab/nsp12185A185SGctTct66B.1.5090.005195
ORF1ab/nsp12185A185VgCtgTt66B.1.5250.000679
ORF1ab/nsp12185A185SGctTct66B.1.5610.002382
ORF1ab/nsp12185A185VgCtgTt66B.1.617.10.000774
ORF1ab/nsp12185A185SGctTct66B.1.6280.002114
ORF1ab/nsp12185A185VgCtgTt66C.370.000696
ORF1ab/nsp12185A185SGctTct66P.20.00112
ORF1ab/nsp12185A185VgCtgTt55AY.1130.000712
ORF1ab/nsp12185A185VgCtgTt55AY.1140.001156
ORF1ab/nsp12185A185VgCtgTt55AY.60.000206
ORF1ab/nsp12185A185VgCtgTt55AY.930.001365
ORF1ab/nsp12185A185VgCtgTt55AY.99.10.007764
ORF1ab/nsp12185A185VgCtgTt55B.1.1.2730.033784
ORF1ab/nsp12185A185VgCtgTt55B.1.1.330.002104
ORF1ab/nsp12185A185VgCtgTt55B.1.1.630.001929
ORF1ab/nsp12185A185SGctTct55B.1.177.160.003322
ORF1ab/nsp12185A185VgCtgTt55B.1.177.40.001055
ORF1ab/nsp12185A185VgCtgTt55B.1.177.770.003631
ORF1ab/nsp12185A185VgCtgTt55B.1.3460.006553
ORF1ab/nsp12185A185AgcTgcC35B.1.5960.000261
ORF1ab/nsp12185A185AgcTgcA25B.1.5960.000174
ORF1ab/nsp12185A185SGctTct55B.40.011038
ORF1ab/nsp12185A185VgCtgTt44AY.1050.002572
ORF1ab/nsp12185A185VgCtgTt44AY.240.001724
ORF1ab/nsp12185A185VgCtgTt44AY.280.007561
ORF1ab/nsp12185A185SGctTct44AY.290.000063
ORF1ab/nsp12185A185SGctTct44AY.390.000099
ORF1ab/nsp12185A185SGctTct44AY.470.000124
ORF1ab/nsp12185A185SGctTct44AY.50.000083
ORF1ab/nsp12185A185VgCtgTt44AY.740.000463
ORF1ab/nsp12185A185AgcTgcC44AY.750.000224
ORF1ab/nsp12185A185SGctTct44AY.980.000316
ORF1ab/nsp12185A185TGctAct34B.10.000027
ORF1ab/nsp12185A185TGcTAcA14B.10.000009
ORF1ab/nsp12185A185VgCtgTt44B.1.1.250.002274
ORF1ab/nsp12185A185VgCtgTt44B.1.1.3170.001647
ORF1ab/nsp12185A185del1gcTgc-34B.1.1.70.000003
ORF1ab/nsp12185A185del1Gct-ct14B.1.1.70.000001
ORF1ab/nsp12185A185VgCtgTt44B.1.177.170.003284
ORF1ab/nsp12185A185VgCtgTt44B.1.36.190.037037
ORF1ab/nsp12185A185SGctTct44B.1.4650.015209
ORF1ab/nsp12185A185TGctAct44B.1.5260.000094
ORF1ab/nsp12185A185SGctTct44B.1.5260.000094
ORF1ab/nsp12185A185VgCtgTt44B.1.5580.018265
ORF1ab/nsp12185A185DgCtgAt33All0.000001
ORF1ab/nsp12185A185GgCtgGt23All0
ORF1ab/nsp12185A185GgCTgGA13All0
ORF1ab/nsp12185A185VgCtgTt33AY.1160.00086
ORF1ab/nsp12185A185VgCtgTt33AY.1170.000254
ORF1ab/nsp12185A185VgCtgTt33AY.16.10.00141
ORF1ab/nsp12185A185TGctAct33AY.250.000018
ORF1ab/nsp12185A185VgCtgTt33AY.29.10.000662
ORF1ab/nsp12185A185VgCtgTt33AY.34.10.00153
ORF1ab/nsp12185A185VgCtgTt33AY.4.20.000065
ORF1ab/nsp12185A185TGctAct33AY.540.000286
ORF1ab/nsp12185A185VgCtgTt33AY.610.000314
ORF1ab/nsp12185A185VgCtgTt33AY.75.10.000541
ORF1ab/nsp12185A185VgCtgTt33AY.90.000203
ORF1ab/nsp12185A185SGctTct33AY.9.10.000251
ORF1ab/nsp12185A185VgCtgTt33AY.9.20.00011
ORF1ab/nsp12185A185VgCtgTt33AY.98.10.000145
ORF1ab/nsp12185A185SGctTct33AY.99.20.000276
ORF1ab/nsp12185A185TGctAct33B.1.10.000054
ORF1ab/nsp12185A185AgcTgcC33B.1.10.000054
ORF1ab/nsp12185A185VgCtgTt33B.1.1.2070.003546
ORF1ab/nsp12185A185AgcTgcG23B.1.1.280.000622
ORF1ab/nsp12185A185AgcTgcA13B.1.1.280.000311
ORF1ab/nsp12185A185VgCtgTt33B.1.1.3740.007126
ORF1ab/nsp12185A185AgcTgcC33B.1.1.4160.002715
ORF1ab/nsp12185A185VgCtgTt33B.1.1.5250.016393
ORF1ab/nsp12185A185VgCtgTt33B.1.1470.002268
ORF1ab/nsp12185A185VgCtgTt33B.1.177.120.000455
ORF1ab/nsp12185A185VgCtgTt33B.1.177.370.081081
ORF1ab/nsp12185A185SGctTct33B.1.177.520.005272
ORF1ab/nsp12185A185SGctTct33B.1.177.820.001432
ORF1ab/nsp12185A185SGctTct33B.1.2220.005076
ORF1ab/nsp12185A185SGctTct33B.1.2600.010033
ORF1ab/nsp12185A185VgCtgTt33B.1.3110.000824
ORF1ab/nsp12185A185VgCtgTt33B.1.3240.004815
ORF1ab/nsp12185A185SGctTct33B.1.360.000438
ORF1ab/nsp12185A185VgCtgTt33B.1.3690.000856
ORF1ab/nsp12185A185SGctTct33B.1.3960.002117
ORF1ab/nsp12185A185AgcTgcG33B.1.4160.003807
ORF1ab/nsp12185A185SGctTct33B.1.4730.057692
ORF1ab/nsp12185A185SGctTct33B.1.5640.001278
ORF1ab/nsp12185A185PGctCct23B.1.617.20.000008
ORF1ab/nsp12185A185PGcTCcA13B.1.617.20.000004
ORF1ab/nsp12185A185VgCtgTt33B.1.6280.001057
ORF1ab/nsp12185A185VgCtgTt33C.36.30.001702
ORF1ab/nsp12185A185SGctTct33C.36.30.001702
ORF1ab/nsp12185A185VgCtgTt22A0.000774
ORF1ab/nsp12185A185SGctTct22AA.40.018182
ORF1ab/nsp12185A185VgCtgTt22AD.20.000438
ORF1ab/nsp12185A185EgCTgAA22All0
ORF1ab/nsp12185A185RGCTCGA12All0
ORF1ab/nsp12185A185RGCtCGt12All0
ORF1ab/nsp12185A185SGctTct22AY.1000.000092
ORF1ab/nsp12185A185VgCtgTt22AY.1010.000981
ORF1ab/nsp12185A185SGctTct22AY.1030.000012
ORF1ab/nsp12185A185SGctTct22AY.1060.00067
ORF1ab/nsp12185A185VgCtgTt22AY.110.002677
ORF1ab/nsp12185A185VgCtgTt22AY.1110.000366
ORF1ab/nsp12185A185AgcTgcG12AY.1190.000035
ORF1ab/nsp12185A185AgcTgcC12AY.1190.000035
ORF1ab/nsp12185A185SGctTct22AY.1200.000074
ORF1ab/nsp12185A185SGctTct22AY.1210.000271
ORF1ab/nsp12185A185VgCtgTt22AY.160.000759
ORF1ab/nsp12185A185AgcTgcC22AY.240.000862
ORF1ab/nsp12185A185VgCtgTt22AY.270.000129
ORF1ab/nsp12185A185TGctAct22AY.290.000032
ORF1ab/nsp12185A185VgCtgTt22AY.300.000791
ORF1ab/nsp12185A185SGctTct22AY.330.000134
ORF1ab/nsp12185A185delGCT---22AY.350.000466
ORF1ab/nsp12185A185SGctTct22AY.360.000296
ORF1ab/nsp12185A185TGctAct22AY.40.000003
ORF1ab/nsp12185A185VgCtgTt22AY.4.2.10.000298
ORF1ab/nsp12185A185SGctTct22AY.420.00008
ORF1ab/nsp12185A185AgcTgcC22AY.440.000012
ORF1ab/nsp12185A185SGctTct22AY.460.000208
ORF1ab/nsp12185A185VgCtgTt22AY.46.10.002053
ORF1ab/nsp12185A185SGctTct22AY.46.60.000144
ORF1ab/nsp12185A185VgCtgTt22AY.5.40.000553
ORF1ab/nsp12185A185VgCtgTt22AY.520.001629
ORF1ab/nsp12185A185VgCtgTt22AY.560.00321
ORF1ab/nsp12185A185SGctTct22AY.610.00021
ORF1ab/nsp12185A185VgCtgTt22AY.620.000871
ORF1ab/nsp12185A185VgCtgTt22AY.70.000392
ORF1ab/nsp12185A185VgCtgTt22AY.730.001331
ORF1ab/nsp12185A185VgCtgTt22AY.850.000854
ORF1ab/nsp12185A185VgCtgTt22AY.9.10.000167
ORF1ab/nsp12185A185VgCtgTt22AY.920.000575
ORF1ab/nsp12185A185VgCtgTt22AY.940.000885
ORF1ab/nsp12185A185SGctTct22AY.98.10.000097
ORF1ab/nsp12185A185DgCtgAt22B.10.000018
ORF1ab/nsp12185A185PGctCct22B.10.000018
ORF1ab/nsp12185A185VgCtgTt22B.1.1.1760.000879
ORF1ab/nsp12185A185VgCtgTt22B.1.1.2190.01
ORF1ab/nsp12185A185SGctTct22B.1.1.3180.000604
ORF1ab/nsp12185A185AgcTgcC22B.1.1.3220.017544
ORF1ab/nsp12185A185VgCtgTt22B.1.1.370.000386
ORF1ab/nsp12185A185VgCtgTt22B.1.1.3720.001377
ORF1ab/nsp12185A185VgCtgTt22B.1.1.4160.00181
ORF1ab/nsp12185A185SGctTct22B.1.1.4200.002012
ORF1ab/nsp12185A185AgcTgcC22B.1.1.5190.000079
ORF1ab/nsp12185A185VgCtgTt22B.1.1.5210.010695
ORF1ab/nsp12185A185SGctTct22B.1.1.570.022989
ORF1ab/nsp12185A185VgCtgTt22B.1.1.700.000682
ORF1ab/nsp12185A185SGctTct22B.1.1.700.000682
ORF1ab/nsp12185A185AgcTgcG22B.1.1.700.000682
ORF1ab/nsp12185A185SGctTct22B.1.177.230.006472
ORF1ab/nsp12185A185SGctTct22B.1.177.450.000762
ORF1ab/nsp12185A185SGctTct22B.1.177.500.00939
ORF1ab/nsp12185A185AgcTgcC22B.1.2210.000142
ORF1ab/nsp12185A185VgCtgTt22B.1.221.30.001667
ORF1ab/nsp12185A185SGctTct22B.1.2430.000139
ORF1ab/nsp12185A185AgcTgcC22B.1.3510.000059
ORF1ab/nsp12185A185SGctTct22B.1.36.10.002281
ORF1ab/nsp12185A185VgCtgTt22B.1.36.290.001035
ORF1ab/nsp12185A185VgCtgTt22B.1.36.380.003284
ORF1ab/nsp12185A185VgCtgTt22B.1.3890.002004
ORF1ab/nsp12185A185AgcTgcC22B.1.4090.001563
ORF1ab/nsp12185A185SGctTct22B.1.4090.001563
ORF1ab/nsp12185A185SGctTct22B.1.416.10.003125
ORF1ab/nsp12185A185SGctTct22B.1.4290.000047
ORF1ab/nsp12185A185TGctAct22B.1.4290.000047
ORF1ab/nsp12185A185SGctTct22B.1.4380.013072
ORF1ab/nsp12185A185SGctTct22B.1.438.10.000215
ORF1ab/nsp12185A185SGctTct22B.1.4620.014493
ORF1ab/nsp12185A185delGCT---22B.1.5250.000226
ORF1ab/nsp12185A185SGctTct22B.1.5330.019231
ORF1ab/nsp12185A185VgCtgTt22B.1.564.10.003155
ORF1ab/nsp12185A185VgCtgTt22B.1.595.10.011696
ORF1ab/nsp12185A185SGctTct22B.1.6090.000959
ORF1ab/nsp12185A185VgCtgTt22B.1.6090.000959
ORF1ab/nsp12185A185SGctTct22B.1.617.10.000258
ORF1ab/nsp12185A185TGctAct22B.1.617.20.000008
ORF1ab/nsp12185A185RGCtCGt12B.1.617.20.000004
ORF1ab/nsp12185A185RGCTCGA12B.1.617.20.000004
ORF1ab/nsp12185A185GgCTgGA12B.1.617.20.000004
ORF1ab/nsp12185A185GgCtgGt12B.1.617.20.000004
ORF1ab/nsp12185A185VgCtgTt22B.1.6230.001073
ORF1ab/nsp12185A185VgCtgTt22C.310.035714
ORF1ab/nsp12185A185VgCtgTt22C.36.20.068966
ORF1ab/nsp12185A185VgCtgTt22D.20.00015
ORF1ab/nsp12185A185AgcTgcC22D.20.00015
ORF1ab/nsp12185A185VgCtgTt22L.30.007092
ORF1ab/nsp12185A185AgcTgcG22P.10.000032
ORF1ab/nsp12185A185AgcTgcC22P.1.170.000324
ORF1ab/nsp12185A185VgCtgTt22P.20.000373
ORF1ab/nsp12185A185VgCtgTt22Q.10.000253
ORF1ab/nsp12185A185SGctTct22Q.30.00029
ORF1ab/nsp12185A185VgCtgTt22Q.60.013245
ORF1ab/nsp12185A185VgCtgTt22R.10.00018
ORF1ab/nsp12185A185SGctTct11A0.000387
ORF1ab/nsp12185A185VgCtgTt11A.190.009434
ORF1ab/nsp12185A185VgCtgTt11A.2.20.001689
ORF1ab/nsp12185A185VgCtgTt11A.270.001656
ORF1ab/nsp12185A185SGctTct11A.50.001923
ORF1ab/nsp12185A185AgcTgcC11AA.20.007692
ORF1ab/nsp12185A185LGCtCTt11All0
ORF1ab/nsp12185A185YGCtTAt11All0
ORF1ab/nsp12185A185del2GCt--t11All0
ORF1ab/nsp12185A185SGctTct11AN.10.02
ORF1ab/nsp12185A185VgCtgTt11AP.10.001502
ORF1ab/nsp12185A185VgCtgTt11AY.100.00053
ORF1ab/nsp12185A185SGctTct11AY.1010.00049
ORF1ab/nsp12185A185TGctAct11AY.1040.001984
ORF1ab/nsp12185A185VgCtgTt11AY.1060.000335
ORF1ab/nsp12185A185VgCtgTt11AY.1070.000466
ORF1ab/nsp12185A185TGctAct11AY.1070.000466
ORF1ab/nsp12185A185AgcTgcC11AY.1130.000142
ORF1ab/nsp12185A185AgcTgcC11AY.1160.000287
ORF1ab/nsp12185A185AgcTgcC11AY.1170.000085
ORF1ab/nsp12185A185AgcTgcC11AY.1180.000063
ORF1ab/nsp12185A185VgCtgTt11AY.120.000316
ORF1ab/nsp12185A185del1gcTgc-11AY.120.10.000321
ORF1ab/nsp12185A185SGctTct11AY.140.000088
ORF1ab/nsp12185A185AgcTgcC11AY.16.10.00047
ORF1ab/nsp12185A185VgCtgTt11AY.190.00114
ORF1ab/nsp12185A185TGctAct11AY.200.000039
ORF1ab/nsp12185A185VgCtgTt11AY.23.10.000417
ORF1ab/nsp12185A185SGctTct11AY.260.000028
ORF1ab/nsp12185A185AgcTgcC11AY.260.000028
ORF1ab/nsp12185A185AgcTgcC11AY.300.000396
ORF1ab/nsp12185A185TGctAct11AY.330.000067
ORF1ab/nsp12185A185AgcTgcC11AY.330.000067
ORF1ab/nsp12185A185VgCtgTt11AY.350.000233
ORF1ab/nsp12185A185VgCtgTt11AY.360.000148
ORF1ab/nsp12185A185delGCT---11AY.390.000025
ORF1ab/nsp12185A185VgCtgTt11AY.4.10.000737
ORF1ab/nsp12185A185AgcTgcA11AY.4.20.000022
ORF1ab/nsp12185A185SGctTct11AY.4.30.000842
ORF1ab/nsp12185A185VgCtgTt11AY.4.30.000842
ORF1ab/nsp12185A185VgCtgTt11AY.4.40.000409
ORF1ab/nsp12185A185AgcTgcC11AY.4.50.000107
ORF1ab/nsp12185A185SGctTct11AY.4.50.000107
ORF1ab/nsp12185A185delGCT---11AY.430.000004
ORF1ab/nsp12185A185SGctTct11AY.450.000122
ORF1ab/nsp12185A185del1Gct-ct11AY.460.000104
ORF1ab/nsp12185A185AgcTgcC11AY.460.000104
ORF1ab/nsp12185A185SGctTct11AY.46.40.000165
ORF1ab/nsp12185A185VgCtgTt11AY.46.40.000165
ORF1ab/nsp12185A185AgcTgcC11AY.46.50.000198
ORF1ab/nsp12185A185SGctTct11AY.500.000799
ORF1ab/nsp12185A185VgCtgTt11AY.550.000917
ORF1ab/nsp12185A185SGctTct11AY.570.000656
ORF1ab/nsp12185A185VgCtgTt11AY.580.000907
ORF1ab/nsp12185A185SGctTct11AY.60.000041
ORF1ab/nsp12185A185AgcTgcC11AY.60.000041
ORF1ab/nsp12185A185VgCtgTt11AY.650.000533
ORF1ab/nsp12185A185delGCT---11AY.650.000533
ORF1ab/nsp12185A185VgCtgTt11AY.7.10.000113
ORF1ab/nsp12185A185SGctTct11AY.700.000209
ORF1ab/nsp12185A185SGctTct11AY.710.000475
ORF1ab/nsp12185A185TGctAct11AY.740.000116
ORF1ab/nsp12185A185delGCT---11AY.75.10.00018
ORF1ab/nsp12185A185SGctTct11AY.860.00083
ORF1ab/nsp12185A185SGctTct11AY.90.000068
ORF1ab/nsp12185A185VgCtgTt11AY.910.00073
ORF1ab/nsp12185A185AgcTgcC11AY.940.000443
ORF1ab/nsp12185A185AgcTgcC11AY.98.10.000048
ORF1ab/nsp12185A185VgCtgTt11AY.990.001049
ORF1ab/nsp12185A185delGCT---11AY.990.001049
ORF1ab/nsp12185A185VgCtgTt11B0.000128
ORF1ab/nsp12185A185TGctAct11B0.000128
ORF1ab/nsp12185A185PGctCct11B0.000128
ORF1ab/nsp12185A185del1Gct-ct11B0.000128
ORF1ab/nsp12185A185delGCT---11B.10.000009
ORF1ab/nsp12185A185del1gcTgc-11B.1.10.000018
ORF1ab/nsp12185A185AgcTgcC11B.1.1.10.000327
ORF1ab/nsp12185A185VgCtgTt11B.1.1.10.000327
ORF1ab/nsp12185A185delGCT---11B.1.1.10.000327
ORF1ab/nsp12185A185delGCT---11B.1.1.1390.022727
ORF1ab/nsp12185A185SGctTct11B.1.1.1530.001095
ORF1ab/nsp12185A185EgCTgAA11B.1.1.1610.003534
ORF1ab/nsp12185A185VgCtgTt11B.1.1.1630.007634
ORF1ab/nsp12185A185VgCtgTt11B.1.1.1700.001247
ORF1ab/nsp12185A185VgCtgTt11B.1.1.1890.001513
ORF1ab/nsp12185A185VgCtgTt11B.1.1.2160.00089
ORF1ab/nsp12185A185SGctTct11B.1.1.2160.00089
ORF1ab/nsp12185A185TGctAct11B.1.1.2220.000204
ORF1ab/nsp12185A185SGctTct11B.1.1.2360.006897
ORF1ab/nsp12185A185VgCtgTt11B.1.1.2410.00207
ORF1ab/nsp12185A185VgCtgTt11B.1.1.2430.004082
ORF1ab/nsp12185A185SGctTct11B.1.1.280.000311
ORF1ab/nsp12185A185VgCtgTt11B.1.1.2840.000107
ORF1ab/nsp12185A185VgCtgTt11B.1.1.2890.002083
ORF1ab/nsp12185A185SGctTct11B.1.1.2960.018182
ORF1ab/nsp12185A185VgCtgTt11B.1.1.3040.002809
ORF1ab/nsp12185A185AgcTgcC11B.1.1.3050.003861
ORF1ab/nsp12185A185VgCtgTt11B.1.1.3110.000358
ORF1ab/nsp12185A185TGctAct11B.1.1.3110.000358
ORF1ab/nsp12185A185delGCT---11B.1.1.3150.008475
ORF1ab/nsp12185A185SGctTct11B.1.1.3160.000925
ORF1ab/nsp12185A185VgCtgTt11B.1.1.3280.016949
ORF1ab/nsp12185A185VgCtgTt11B.1.1.3290.003846
ORF1ab/nsp12185A185AgcTgcC11B.1.1.330.000421
ORF1ab/nsp12185A185SGctTct11B.1.1.3430.020833
ORF1ab/nsp12185A185VgCtgTt11B.1.1.3510.002793
ORF1ab/nsp12185A185VgCtgTt11B.1.1.3540.004386
ORF1ab/nsp12185A185SGctTct11B.1.1.370.000193
ORF1ab/nsp12185A185AgcTgcC11B.1.1.370.000193
ORF1ab/nsp12185A185VgCtgTt11B.1.1.3980.003226
ORF1ab/nsp12185A185VgCtgTt11B.1.1.40.002976
ORF1ab/nsp12185A185delGCT---11B.1.1.4090.002833
ORF1ab/nsp12185A185SGctTct11B.1.1.4090.002833
ORF1ab/nsp12185A185SGctTct11B.1.1.4160.000905
ORF1ab/nsp12185A185VgCtgTt11B.1.1.4200.001006
ORF1ab/nsp12185A185GgCtgGt11B.1.1.4340.000349
ORF1ab/nsp12185A185VgCtgTt11B.1.1.4420.018519
ORF1ab/nsp12185A185SGctTct11B.1.1.4480.002033
ORF1ab/nsp12185A185SGctTct11B.1.1.470.005348
ORF1ab/nsp12185A185VgCtgTt11B.1.1.500.000679
ORF1ab/nsp12185A185VgCtgTt11B.1.1.5170.006803
ORF1ab/nsp12185A185PGctCct11B.1.1.70.000001
ORF1ab/nsp12185A185VgCtgTt11B.1.1.980.018519
ORF1ab/nsp12185A185SGctTct11B.1.1240.007812
ORF1ab/nsp12185A185VgCtgTt11B.1.1390.000733
ORF1ab/nsp12185A185SGctTct11B.1.1390.000733
ORF1ab/nsp12185A185PGctCct11B.1.1600.000031
ORF1ab/nsp12185A185VgCtgTt11B.1.1640.014925
ORF1ab/nsp12185A185delGCT---11B.1.1770.000013
ORF1ab/nsp12185A185del1Gct-ct11B.1.1770.000013
ORF1ab/nsp12185A185VgCtgTt11B.1.177.100.000878
ORF1ab/nsp12185A185SGctTct11B.1.177.120.000152
ORF1ab/nsp12185A185SGctTct11B.1.177.210.000076
ORF1ab/nsp12185A185VgCtgTt11B.1.177.420.000894
ORF1ab/nsp12185A185SGctTct11B.1.177.540.000606
ORF1ab/nsp12185A185SGctTct11B.1.177.560.000668
ORF1ab/nsp12185A185VgCtgTt11B.1.177.560.000668
ORF1ab/nsp12185A185SGctTct11B.1.177.570.000281
ORF1ab/nsp12185A185SGctTct11B.1.177.60.000977
ORF1ab/nsp12185A185TGctAct11B.1.177.600.000218
ORF1ab/nsp12185A185VgCtgTt11B.1.177.600.000218
ORF1ab/nsp12185A185SGctTct11B.1.177.620.001192
ORF1ab/nsp12185A185SGctTct11B.1.177.690.001484
ORF1ab/nsp12185A185TGctAct11B.1.177.70.000165
ORF1ab/nsp12185A185PGctCct11B.1.177.70.000165
ORF1ab/nsp12185A185VgCtgTt11B.1.177.730.000566
ORF1ab/nsp12185A185VgCtgTt11B.1.177.750.001041
ORF1ab/nsp12185A185SGctTct11B.1.177.80.000752
ORF1ab/nsp12185A185SGctTct11B.1.177.810.000189
ORF1ab/nsp12185A185LGCtCTt11B.1.177.810.000189
ORF1ab/nsp12185A185VgCtgTt11B.1.177.820.000477
ORF1ab/nsp12185A185VgCtgTt11B.1.177.860.000183
ORF1ab/nsp12185A185AgcTgcC11B.1.177.860.000183
ORF1ab/nsp12185A185VgCtgTt11B.1.177.870.000728
ORF1ab/nsp12185A185VgCtgTt11B.1.177.90.001332
ORF1ab/nsp12185A185TGctAct11B.1.1890.004292
ORF1ab/nsp12185A185VgCtgTt11B.1.1990.004132
ORF1ab/nsp12185A185PGctCct11B.1.20.000009
ORF1ab/nsp12185A185delGCT---11B.1.20.000009
ORF1ab/nsp12185A185YGCtTAt11B.1.20.000009
ORF1ab/nsp12185A185SGctTct11B.1.2100.002132
ORF1ab/nsp12185A185SGctTct11B.1.214.20.0006
ORF1ab/nsp12185A185del1Gct-ct11B.1.2210.000071
ORF1ab/nsp12185A185SGctTct11B.1.2370.004975
ORF1ab/nsp12185A185AgcTgcA11B.1.2400.000216
ORF1ab/nsp12185A185SGctTct11B.1.258.140.00098
ORF1ab/nsp12185A185VgCtgTt11B.1.258.170.000104
ORF1ab/nsp12185A185SGctTct11B.1.258.220.002667
ORF1ab/nsp12185A185SGctTct11B.1.2680.010417
ORF1ab/nsp12185A185SGctTct11B.1.3110.000275
ORF1ab/nsp12185A185SGctTct11B.1.3260.007576
ORF1ab/nsp12185A185VgCtgTt11B.1.3320.003497
ORF1ab/nsp12185A185VgCtgTt11B.1.3330.010526
ORF1ab/nsp12185A185VgCtgTt11B.1.3360.002439
ORF1ab/nsp12185A185SGctTct11B.1.350.008475
ORF1ab/nsp12185A185VgCtgTt11B.1.351.30.000876
ORF1ab/nsp12185A185VgCtgTt11B.1.3560.001727
ORF1ab/nsp12185A185VgCtgTt11B.1.36.160.001425
ORF1ab/nsp12185A185VgCtgTt11B.1.36.170.000494
ORF1ab/nsp12185A185VgCtgTt11B.1.36.20.010753
ORF1ab/nsp12185A185SGctTct11B.1.36.220.001208
ORF1ab/nsp12185A185VgCtgTt11B.1.36.80.001
ORF1ab/nsp12185A185VgCtgTt11B.1.3670.000792
ORF1ab/nsp12185A185SGctTct11B.1.3690.000285
ORF1ab/nsp12185A185SGctTct11B.1.3750.00082
ORF1ab/nsp12185A185VgCtgTt11B.1.3790.017241
ORF1ab/nsp12185A185VgCtgTt11B.1.3800.006623
ORF1ab/nsp12185A185VgCtgTt11B.1.4000.000429
ORF1ab/nsp12185A185VgCtgTt11B.1.4260.001009
ORF1ab/nsp12185A185AgcTgcC11B.1.4270.00005
ORF1ab/nsp12185A185SGctTct11B.1.4280.00102
ORF1ab/nsp12185A185VgCtgTt11B.1.4280.00102
ORF1ab/nsp12185A185VgCtgTt11B.1.438.10.000107
ORF1ab/nsp12185A185VgCtgTt11B.1.4520.013699
ORF1ab/nsp12185A185VgCtgTt11B.1.4560.003268
ORF1ab/nsp12185A185SGctTct11B.1.4590.004082
ORF1ab/nsp12185A185EgCTgAA11B.1.4620.007246
ORF1ab/nsp12185A185SGctTct11B.1.466.10.007194
ORF1ab/nsp12185A185SGctTct11B.1.4680.005714
ORF1ab/nsp12185A185SGctTct11B.1.4740.001901
ORF1ab/nsp12185A185SGctTct11B.1.4970.000315
ORF1ab/nsp12185A185VgCtgTt11B.1.5030.002488
ORF1ab/nsp12185A185SGctTct11B.1.5170.000427
ORF1ab/nsp12185A185VgCtgTt11B.1.5240.001406
ORF1ab/nsp12185A185SGctTct11B.1.5250.000113
ORF1ab/nsp12185A185VgCtgTt11B.1.5510.00129
ORF1ab/nsp12185A185VgCtgTt11B.1.5610.000397
ORF1ab/nsp12185A185PGctCct11B.1.5640.000426
ORF1ab/nsp12185A185AgcTgcC11B.1.5640.000426
ORF1ab/nsp12185A185SGctTct11B.1.5670.003333
ORF1ab/nsp12185A185VgCtgTt11B.1.5740.002151
ORF1ab/nsp12185A185VgCtgTt11B.1.5750.000303
ORF1ab/nsp12185A185VgCtgTt11B.1.5890.007576
ORF1ab/nsp12185A185PGctCct11B.1.5960.000087
ORF1ab/nsp12185A185TGctAct11B.1.5960.000087
ORF1ab/nsp12185A185SGctTct11B.1.5960.000087
ORF1ab/nsp12185A185DgCtgAt11B.1.5960.000087
ORF1ab/nsp12185A185delGCT---11B.1.617.10.000129
ORF1ab/nsp12185A185delGCT---11B.1.617.20.000004
ORF1ab/nsp12185A185del1Gct-ct11B.1.617.20.000004
ORF1ab/nsp12185A185VgCtgTt11B.1.6200.000946
ORF1ab/nsp12185A185VgCtgTt11B.1.621.10.000506
ORF1ab/nsp12185A185VgCtgTt11B.1.6250.002353
ORF1ab/nsp12185A185VgCtgTt11B.1.930.000934
ORF1ab/nsp12185A185PGctCct11B.200.023256
ORF1ab/nsp12185A185delGCT---11B.340.013699
ORF1ab/nsp12185A185SGctTct11B.400.000364
ORF1ab/nsp12185A185VgCtgTt11B.550.00295
ORF1ab/nsp12185A185SGctTct11B.550.00295
ORF1ab/nsp12185A185VgCtgTt11B.6.10.026316
ORF1ab/nsp12185A185SGctTct11C.10.002392
ORF1ab/nsp12185A185VgCtgTt11C.1.10.076923
ORF1ab/nsp12185A185VgCtgTt11C.160.00106
ORF1ab/nsp12185A185VgCtgTt11C.30.10.006711
ORF1ab/nsp12185A185VgCtgTt11C.360.000911
ORF1ab/nsp12185A185del1gcTgc-11D.20.000075
ORF1ab/nsp12185A185VgCtgTt11N.50.001767
ORF1ab/nsp12185A185VgCtgTt11P.1.10.000318
ORF1ab/nsp12185A185AgcTgcC11P.1.140.000048
ORF1ab/nsp12185A185VgCtgTt11P.1.160.000374
ORF1ab/nsp12185A185TGctAct11P.1.170.000162
ORF1ab/nsp12185A185del2GCt--t11Q.10.000126