CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 173

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12173R173CR4565CnonsynCgcTgc289228910.99965413957-13959
ORF1ab/nsp12173R173CR4565CnonsynCgCTgT289210.00034578113957-13959
ORF1ab/nsp12173R173RR4565RsyncgCcgT3983740.93969913957-13959
ORF1ab/nsp12173R173RR4565RsyncgCcgA398220.055276413957-13959
ORF1ab/nsp12173R173RR4565RsynCgCAgA39810.0025125613957-13959
ORF1ab/nsp12173R173RR4565RsyncgCcgG39810.0025125613957-13959
ORF1ab/nsp12173R173HR4565HnonsyncGccAc290290113957-13959
ORF1ab/nsp12173R173LR4565LnonsyncGccTc2182170.99541313957-13959
ORF1ab/nsp12173R173LR4565LnonsyncGCcTA21810.0045871613957-13959
ORF1ab/nsp12173R173SR4565SnonsynCgcAgc9696113957-13959
ORF1ab/nsp12173R173delR4565deldelCGC---1616113957-13959
ORF1ab/nsp12173R173GR4565GnonsynCgcGgc33113957-13959
ORF1ab/nsp12173R173IR4565InonsynCGCATA210.513957-13959
ORF1ab/nsp12173R173IR4565InonsynCGcATc210.513957-13959
ORF1ab/nsp12173R173PR4565PnonsyncGccCc11113957-13959
ORF1ab/nsp12173R173VR4565VnonsynCGcGTc11113957-13959
ORF1ab/nsp12173R173del1R4565del1delCgc-gc11113957-13959

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12173R173CCgcTgc28912892All0.000553
ORF1ab/nsp12173R173CCgCTgT12892All0
ORF1ab/nsp12173R173CCgcTgc998998B.1.438.10.107047
ORF1ab/nsp12173R173RcgCcgT374398All0.000072
ORF1ab/nsp12173R173RcgCcgA22398All0.000004
ORF1ab/nsp12173R173RCgCAgA1398All0
ORF1ab/nsp12173R173RcgCcgG1398All0
ORF1ab/nsp12173R173HcGccAc290290All0.000055
ORF1ab/nsp12173R173CCgcTgc269269AY.40.000419
ORF1ab/nsp12173R173CCgcTgc235235B.1.5750.071299
ORF1ab/nsp12173R173LcGccTc217218All0.000042
ORF1ab/nsp12173R173LcGCcTA1218All0
ORF1ab/nsp12173R173CCgcTgc196196B.1.6120.519894
ORF1ab/nsp12173R173CCgcTgc148148AY.250.00089
ORF1ab/nsp12173R173RcgCcgT128128B.1.1.70.000115
ORF1ab/nsp12173R173CCgcTgc110111B.1.617.20.000414
ORF1ab/nsp12173R173CCgCTgT1111B.1.617.20.000004
ORF1ab/nsp12173R173CCgcTgc106106AY.1030.000658
ORF1ab/nsp12173R173SCgcAgc9696All0.000018
ORF1ab/nsp12173R173CCgcTgc8989AY.39.10.003526
ORF1ab/nsp12173R173CCgcTgc7575B.1.1.70.000067
ORF1ab/nsp12173R173CCgcTgc5858AY.20.020655
ORF1ab/nsp12173R173LcGccTc4848B.1.1770.000632
ORF1ab/nsp12173R173CCgcTgc4646B.1.10.000834
ORF1ab/nsp12173R173CCgcTgc4343B.1.36.350.111979
ORF1ab/nsp12173R173LcGccTc4242B.1.1.70.000038
ORF1ab/nsp12173R173HcGccAc4141AY.30.000408
ORF1ab/nsp12173R173CCgcTgc4040AY.440.000243
ORF1ab/nsp12173R173HcGccAc4040B.1.1.70.000036
ORF1ab/nsp12173R173CCgcTgc3737B.10.000339
ORF1ab/nsp12173R173CCgcTgc3131AY.430.000137
ORF1ab/nsp12173R173HcGccAc3131B.1.20.000273
ORF1ab/nsp12173R173CCgcTgc2929AY.30.000288
ORF1ab/nsp12173R173HcGccAc2626B.1.110.30.018678
ORF1ab/nsp12173R173HcGccAc2626B.1.617.20.000098
ORF1ab/nsp12173R173SCgcAgc2525B.1.36.80.025
ORF1ab/nsp12173R173RcgCcgT2123AY.40.000033
ORF1ab/nsp12173R173RcgCcgA223AY.40.000003
ORF1ab/nsp12173R173RcgCcgT2121B.1.1.4340.00732
ORF1ab/nsp12173R173SCgcAgc2121B.1.1.70.000019
ORF1ab/nsp12173R173CCgcTgc2020B.1.1770.000263
ORF1ab/nsp12173R173CCgcTgc1818AY.200.0007
ORF1ab/nsp12173R173LcGccTc1818B.1.177.750.01873
ORF1ab/nsp12173R173HcGccAc1717AY.40.000026
ORF1ab/nsp12173R173delCGC---1616All0.000003
ORF1ab/nsp12173R173LcGccTc1616B.1.10.00029
ORF1ab/nsp12173R173RcgCcgA1515AY.30.000149
ORF1ab/nsp12173R173SCgcAgc1414AY.40.000022
ORF1ab/nsp12173R173CCgcTgc1414B.1.20.000123
ORF1ab/nsp12173R173RcgCcgT1313B.1.4480.034121
ORF1ab/nsp12173R173CCgcTgc1212AY.290.000189
ORF1ab/nsp12173R173CCgcTgc1212B.1.1.5190.000477
ORF1ab/nsp12173R173RcgCcgT1212B.1.4280.012245
ORF1ab/nsp12173R173RcgCcgT1212B.1.4290.000282
ORF1ab/nsp12173R173CCgcTgc1212C.370.001393
ORF1ab/nsp12173R173CCgcTgc1111AY.270.000712
ORF1ab/nsp12173R173RcgCcgT1111B.1.6210.000974
ORF1ab/nsp12173R173CCgcTgc1010AY.1000.00046
ORF1ab/nsp12173R173CCgcTgc1010AY.260.000283
ORF1ab/nsp12173R173CCgcTgc1010R.10.0009
ORF1ab/nsp12173R173RcgCcgT99AY.1210.001218
ORF1ab/nsp12173R173RcgCcgT99AY.260.000255
ORF1ab/nsp12173R173HcGccAc99AY.430.00004
ORF1ab/nsp12173R173LcGccTc99B.1.20.000079
ORF1ab/nsp12173R173HcGccAc99B.1.2210.000639
ORF1ab/nsp12173R173CCgcTgc99B.1.2410.007305
ORF1ab/nsp12173R173CCgcTgc88AY.910.005844
ORF1ab/nsp12173R173HcGccAc88B.1.1.2220.001632
ORF1ab/nsp12173R173SCgcAgc88B.1.1.5190.000318
ORF1ab/nsp12173R173RcgCcgT88B.1.5610.003176
ORF1ab/nsp12173R173RcgCcgT78B.1.617.20.000026
ORF1ab/nsp12173R173RcgCcgA18B.1.617.20.000004
ORF1ab/nsp12173R173CCgcTgc77AY.390.000173
ORF1ab/nsp12173R173CCgcTgc77AY.4.20.000152
ORF1ab/nsp12173R173CCgcTgc77AY.50.000145
ORF1ab/nsp12173R173CCgcTgc77AY.99.20.000645
ORF1ab/nsp12173R173LcGccTc77B.10.000064
ORF1ab/nsp12173R173LcGccTc77B.1.1.3010.008255
ORF1ab/nsp12173R173LcGccTc77B.1.2580.000466
ORF1ab/nsp12173R173RcgCcgT66AY.1030.000037
ORF1ab/nsp12173R173RcgCcgT66AY.1200.000223
ORF1ab/nsp12173R173CCgcTgc66AY.230.000418
ORF1ab/nsp12173R173HcGccAc66B.10.000055
ORF1ab/nsp12173R173SCgcAgc66B.10.000055
ORF1ab/nsp12173R173CCgcTgc66B.1.2430.000418
ORF1ab/nsp12173R173LcGccTc66B.1.258.140.005882
ORF1ab/nsp12173R173HcGccAc66B.1.3690.001711
ORF1ab/nsp12173R173SCgcAgc66B.1.617.20.000023
ORF1ab/nsp12173R173CCgcTgc66P.1.140.000287
ORF1ab/nsp12173R173CCgcTgc55AY.1020.000133
ORF1ab/nsp12173R173RcgCcgT45AY.250.000024
ORF1ab/nsp12173R173RcgCcgG15AY.250.000006
ORF1ab/nsp12173R173CCgcTgc55AY.330.000334
ORF1ab/nsp12173R173RcgCcgT55AY.390.000124
ORF1ab/nsp12173R173CCgcTgc55AY.46.40.000823
ORF1ab/nsp12173R173RcgCcgT55AY.480.002326
ORF1ab/nsp12173R173RcgCcgT55B.10.000046
ORF1ab/nsp12173R173CCgcTgc55B.1.1.2430.020408
ORF1ab/nsp12173R173LcGccTc55B.1.1600.000156
ORF1ab/nsp12173R173HcGccAc55B.1.1770.000066
ORF1ab/nsp12173R173LcGccTc55B.1.177.530.011962
ORF1ab/nsp12173R173RcgCcgT55B.1.20.000044
ORF1ab/nsp12173R173RcgCcgT55B.1.2650.006353
ORF1ab/nsp12173R173CCgcTgc55B.1.4270.000252
ORF1ab/nsp12173R173CCgcTgc55D.20.000375
ORF1ab/nsp12173R173RcgCcgT55P.10.000079
ORF1ab/nsp12173R173CCgcTgc55P.1.160.001871
ORF1ab/nsp12173R173HcGccAc44AY.1000.000184
ORF1ab/nsp12173R173CCgcTgc44AY.1130.00057
ORF1ab/nsp12173R173CCgcTgc44AY.1180.000251
ORF1ab/nsp12173R173CCgcTgc44AY.160.001519
ORF1ab/nsp12173R173RcgCcgT44AY.39.10.000158
ORF1ab/nsp12173R173HcGccAc44AY.440.000024
ORF1ab/nsp12173R173RcgCcgT44AY.440.000024
ORF1ab/nsp12173R173CCgcTgc44AY.60.000165
ORF1ab/nsp12173R173LcGccTc44B.1.1.1610.014134
ORF1ab/nsp12173R173CCgcTgc44B.1.1.2140.000222
ORF1ab/nsp12173R173delCGC---44B.1.1.70.000004
ORF1ab/nsp12173R173CCgcTgc44B.1.177.520.00703
ORF1ab/nsp12173R173CCgcTgc44B.1.2210.000284
ORF1ab/nsp12173R173RcgCcgT44B.1.3510.000119
ORF1ab/nsp12173R173RcgCcgT44B.1.36.170.001976
ORF1ab/nsp12173R173RcgCcgT44B.1.5260.000094
ORF1ab/nsp12173R173RcgCcgT44B.1.5960.000349
ORF1ab/nsp12173R173CCgcTgc44P.10.000063
ORF1ab/nsp12173R173GCgcGgc33All0.000001
ORF1ab/nsp12173R173CCgcTgc33AY.10.001187
ORF1ab/nsp12173R173RcgCcgT33AY.1130.000427
ORF1ab/nsp12173R173HcGccAc33AY.270.000194
ORF1ab/nsp12173R173CCgcTgc33AY.300.001187
ORF1ab/nsp12173R173CCgcTgc33AY.470.000093
ORF1ab/nsp12173R173CCgcTgc33AY.90.000203
ORF1ab/nsp12173R173RcgCcgT33AY.99.20.000276
ORF1ab/nsp12173R173CCgcTgc33B0.000383
ORF1ab/nsp12173R173RcgCcgT33B.1.10.000054
ORF1ab/nsp12173R173RcgCcgT33B.1.1.2140.000166
ORF1ab/nsp12173R173LcGccTc33B.1.1.2670.030303
ORF1ab/nsp12173R173HcGccAc33B.1.1080.017442
ORF1ab/nsp12173R173HcGccAc33B.1.1650.035714
ORF1ab/nsp12173R173HcGccAc33B.1.3510.000089
ORF1ab/nsp12173R173RcgCcgT33B.1.4270.000151
ORF1ab/nsp12173R173CCgcTgc33B.1.4290.000071
ORF1ab/nsp12173R173HcGccAc33B.1.5250.000339
ORF1ab/nsp12173R173CCgcTgc33B.1.5260.000071
ORF1ab/nsp12173R173CCgcTgc33B.1.564.10.004732
ORF1ab/nsp12173R173RcgCcgT33B.1.5750.00091
ORF1ab/nsp12173R173CCgcTgc33B.1.5820.001472
ORF1ab/nsp12173R173CCgcTgc33B.1.5960.000261
ORF1ab/nsp12173R173HcGccAc33P.10.000047
ORF1ab/nsp12173R173ICGCATA120.055556
ORF1ab/nsp12173R173RCgCAgA120.055556
ORF1ab/nsp12173R173LcGCcTA120.055556
ORF1ab/nsp12173R173RcgCcgA120.055556
ORF1ab/nsp12173R173ICGcATc120.055556
ORF1ab/nsp12173R173LcGccTc120.055556
ORF1ab/nsp12173R173ICGcATc12All0
ORF1ab/nsp12173R173ICGCATA12All0
ORF1ab/nsp12173R173RcgCcgT22AY.1170.000169
ORF1ab/nsp12173R173HcGccAc22AY.1190.000071
ORF1ab/nsp12173R173CCgcTgc22AY.1190.000071
ORF1ab/nsp12173R173CCgcTgc22AY.1200.000074
ORF1ab/nsp12173R173CCgcTgc22AY.16.10.00094
ORF1ab/nsp12173R173HcGccAc22AY.250.000012
ORF1ab/nsp12173R173HcGccAc22AY.4.20.000043
ORF1ab/nsp12173R173RcgCcgT12AY.4.20.000022
ORF1ab/nsp12173R173RcgCcgA12AY.4.20.000022
ORF1ab/nsp12173R173HcGccAc22AY.4.50.000215
ORF1ab/nsp12173R173HcGccAc22AY.420.00008
ORF1ab/nsp12173R173LcGccTc22AY.460.000208
ORF1ab/nsp12173R173RcgCcgT22AY.46.30.001867
ORF1ab/nsp12173R173CCgcTgc22AY.5.40.000553
ORF1ab/nsp12173R173CCgcTgc22AY.590.001059
ORF1ab/nsp12173R173CCgcTgc22AY.850.000854
ORF1ab/nsp12173R173CCgcTgc22AY.980.000158
ORF1ab/nsp12173R173CCgcTgc22B.1.1.10.000653
ORF1ab/nsp12173R173CCgcTgc22B.1.1.2160.001781
ORF1ab/nsp12173R173LcGccTc22B.1.1.2160.001781
ORF1ab/nsp12173R173CCgcTgc22B.1.1.2220.000408
ORF1ab/nsp12173R173LcGccTc22B.1.1.5190.000079
ORF1ab/nsp12173R173RcgCcgT22B.1.1110.00235
ORF1ab/nsp12173R173CCgcTgc22B.1.1280.001271
ORF1ab/nsp12173R173CCgcTgc22B.1.2060.001631
ORF1ab/nsp12173R173RcgCcgT22B.1.2210.000142
ORF1ab/nsp12173R173RcgCcgT22B.1.2430.000139
ORF1ab/nsp12173R173RcgCcgA12B.1.2580.000067
ORF1ab/nsp12173R173RcgCcgT12B.1.2580.000067
ORF1ab/nsp12173R173SCgcAgc22B.1.258.140.001961
ORF1ab/nsp12173R173RcgCcgT22B.1.258.220.005333
ORF1ab/nsp12173R173CCgcTgc22B.1.4380.013072
ORF1ab/nsp12173R173CCgcTgc22B.1.4990.002101
ORF1ab/nsp12173R173LcGccTc22B.1.5260.000047
ORF1ab/nsp12173R173CCgcTgc22B.1.5680.002222
ORF1ab/nsp12173R173LcGccTc22B.1.5960.000174
ORF1ab/nsp12173R173LcGccTc22B.1.617.20.000008
ORF1ab/nsp12173R173CCgcTgc22B.1.6210.000177
ORF1ab/nsp12173R173CCgcTgc22B.1.6370.000146
ORF1ab/nsp12173R173LcGccTc22B.610.011494
ORF1ab/nsp12173R173LcGccTc22P.10.000032
ORF1ab/nsp12173R173delCGC---22Q.10.000253
ORF1ab/nsp12173R173HcGccAc22Q.30.00029
ORF1ab/nsp12173R173SCgcAgc110.055556
ORF1ab/nsp12173R173LcGccTc11A.10.000282
ORF1ab/nsp12173R173CCgcTgc11A.280.002646
ORF1ab/nsp12173R173SCgcAgc11AE.80.000489
ORF1ab/nsp12173R173del1Cgc-gc11All0
ORF1ab/nsp12173R173PcGccCc11All0
ORF1ab/nsp12173R173VCGcGTc11All0
ORF1ab/nsp12173R173CCgcTgc11AY.1010.00049
ORF1ab/nsp12173R173RcgCcgT11AY.1020.000027
ORF1ab/nsp12173R173HcGccAc11AY.1020.000027
ORF1ab/nsp12173R173HcGccAc11AY.1040.001984
ORF1ab/nsp12173R173CCgcTgc11AY.1100.000113
ORF1ab/nsp12173R173RcgCcgT11AY.1110.000183
ORF1ab/nsp12173R173HcGccAc11AY.1170.000085
ORF1ab/nsp12173R173HcGccAc11AY.120.000316
ORF1ab/nsp12173R173CCgcTgc11AY.120.000316
ORF1ab/nsp12173R173HcGccAc11AY.1200.000037
ORF1ab/nsp12173R173LcGccTc11AY.1200.000037
ORF1ab/nsp12173R173CCgcTgc11AY.120.10.000321
ORF1ab/nsp12173R173CCgcTgc11AY.1210.000135
ORF1ab/nsp12173R173CCgcTgc11AY.140.000088
ORF1ab/nsp12173R173GCgcGgc11AY.140.000088
ORF1ab/nsp12173R173CCgcTgc11AY.220.002092
ORF1ab/nsp12173R173RcgCcgT11AY.230.00007
ORF1ab/nsp12173R173CCgcTgc11AY.23.10.000417
ORF1ab/nsp12173R173HcGccAc11AY.260.000028
ORF1ab/nsp12173R173RcgCcgT11AY.290.000016
ORF1ab/nsp12173R173VCGcGTc11AY.300.000396
ORF1ab/nsp12173R173HcGccAc11AY.330.000067
ORF1ab/nsp12173R173RcgCcgT11AY.330.000067
ORF1ab/nsp12173R173SCgcAgc11AY.340.000097
ORF1ab/nsp12173R173SCgcAgc11AY.360.000148
ORF1ab/nsp12173R173HcGccAc11AY.390.000025
ORF1ab/nsp12173R173CCgcTgc11AY.4.40.000409
ORF1ab/nsp12173R173LcGccTc11AY.4.40.000409
ORF1ab/nsp12173R173LcGccTc11AY.420.00004
ORF1ab/nsp12173R173CCgcTgc11AY.420.00004
ORF1ab/nsp12173R173RcgCcgA11AY.430.000004
ORF1ab/nsp12173R173SCgcAgc11AY.430.000004
ORF1ab/nsp12173R173RcgCcgT11AY.460.000104
ORF1ab/nsp12173R173CCgcTgc11AY.460.000104
ORF1ab/nsp12173R173LcGccTc11AY.46.10.001027
ORF1ab/nsp12173R173SCgcAgc11AY.46.40.000165
ORF1ab/nsp12173R173RcgCcgT11AY.46.60.000072
ORF1ab/nsp12173R173CCgcTgc11AY.46.60.000072
ORF1ab/nsp12173R173RcgCcgT11AY.470.000031
ORF1ab/nsp12173R173SCgcAgc11AY.470.000031
ORF1ab/nsp12173R173HcGccAc11AY.50.000021
ORF1ab/nsp12173R173RcgCcgT11AY.5.30.000337
ORF1ab/nsp12173R173CCgcTgc11AY.530.000288
ORF1ab/nsp12173R173CCgcTgc11AY.540.000095
ORF1ab/nsp12173R173SCgcAgc11AY.60.000041
ORF1ab/nsp12173R173RcgCcgT11AY.60.000041
ORF1ab/nsp12173R173CCgcTgc11AY.610.000105
ORF1ab/nsp12173R173CCgcTgc11AY.620.000436
ORF1ab/nsp12173R173RcgCcgT11AY.620.000436
ORF1ab/nsp12173R173CCgcTgc11AY.670.000464
ORF1ab/nsp12173R173CCgcTgc11AY.680.000274
ORF1ab/nsp12173R173RcgCcgT11AY.690.000187
ORF1ab/nsp12173R173CCgcTgc11AY.730.000665
ORF1ab/nsp12173R173CCgcTgc11AY.740.000116
ORF1ab/nsp12173R173delCGC---11AY.750.000056
ORF1ab/nsp12173R173CCgcTgc11AY.75.10.00018
ORF1ab/nsp12173R173SCgcAgc11AY.770.001127
ORF1ab/nsp12173R173CCgcTgc11AY.840.000437
ORF1ab/nsp12173R173HcGccAc11AY.9.10.000084
ORF1ab/nsp12173R173HcGccAc11AY.900.000684
ORF1ab/nsp12173R173CCgcTgc11AY.920.000287
ORF1ab/nsp12173R173CCgcTgc11AY.960.002075
ORF1ab/nsp12173R173CCgcTgc11AY.98.10.000048
ORF1ab/nsp12173R173CCgcTgc11AY.990.001049
ORF1ab/nsp12173R173delCGC---11AY.990.001049
ORF1ab/nsp12173R173LcGccTc11B0.000128
ORF1ab/nsp12173R173delCGC---11B0.000128
ORF1ab/nsp12173R173del1Cgc-gc11B.10.000009
ORF1ab/nsp12173R173PcGccCc11B.1.10.000018
ORF1ab/nsp12173R173GCgcGgc11B.1.10.000018
ORF1ab/nsp12173R173HcGccAc11B.1.10.000018
ORF1ab/nsp12173R173delCGC---11B.1.1.10.000327
ORF1ab/nsp12173R173delCGC---11B.1.1.1390.022727
ORF1ab/nsp12173R173HcGccAc11B.1.1.2140.000055
ORF1ab/nsp12173R173HcGccAc11B.1.1.250.000569
ORF1ab/nsp12173R173RcgCcgT11B.1.1.2550.00303
ORF1ab/nsp12173R173CCgcTgc11B.1.1.280.000311
ORF1ab/nsp12173R173HcGccAc11B.1.1.2860.002899
ORF1ab/nsp12173R173CCgcTgc11B.1.1.2910.000742
ORF1ab/nsp12173R173CCgcTgc11B.1.1.3010.001179
ORF1ab/nsp12173R173HcGccAc11B.1.1.3060.000438
ORF1ab/nsp12173R173CCgcTgc11B.1.1.3260.001761
ORF1ab/nsp12173R173CCgcTgc11B.1.1.330.000421
ORF1ab/nsp12173R173CCgcTgc11B.1.1.3430.020833
ORF1ab/nsp12173R173delCGC---11B.1.1.3480.000796
ORF1ab/nsp12173R173LcGccTc11B.1.1.3480.000796
ORF1ab/nsp12173R173CCgcTgc11B.1.1.3880.045455
ORF1ab/nsp12173R173CCgcTgc11B.1.1.4060.006494
ORF1ab/nsp12173R173SCgcAgc11B.1.1.4200.001006
ORF1ab/nsp12173R173CCgcTgc11B.1.1.4340.000349
ORF1ab/nsp12173R173delCGC---11B.1.1.4340.000349
ORF1ab/nsp12173R173RcgCcgT11B.1.1.4480.002033
ORF1ab/nsp12173R173HcGccAc11B.1.1.5190.00004
ORF1ab/nsp12173R173RcgCcgT11B.1.1.5190.00004
ORF1ab/nsp12173R173CCgcTgc11B.1.1.630.000386
ORF1ab/nsp12173R173CCgcTgc11B.1.110.30.000718
ORF1ab/nsp12173R173HcGccAc11B.1.1450.052632
ORF1ab/nsp12173R173RcgCcgT11B.1.1600.000031
ORF1ab/nsp12173R173LcGccTc11B.1.160.300.002976
ORF1ab/nsp12173R173HcGccAc11B.1.1700.00431
ORF1ab/nsp12173R173delCGC---11B.1.1770.000013
ORF1ab/nsp12173R173LcGccTc11B.1.177.100.000878
ORF1ab/nsp12173R173HcGccAc11B.1.177.160.000664
ORF1ab/nsp12173R173LcGccTc11B.1.177.440.000519
ORF1ab/nsp12173R173LcGccTc11B.1.177.520.001757
ORF1ab/nsp12173R173LcGccTc11B.1.177.550.002331
ORF1ab/nsp12173R173CCgcTgc11B.1.177.600.000218
ORF1ab/nsp12173R173CCgcTgc11B.1.177.810.000189
ORF1ab/nsp12173R173LcGccTc11B.1.177.830.001481
ORF1ab/nsp12173R173LcGccTc11B.1.177.880.012346
ORF1ab/nsp12173R173GCgcGgc11B.1.221.30.000833
ORF1ab/nsp12173R173HcGccAc11B.1.2320.000537
ORF1ab/nsp12173R173CCgcTgc11B.1.2340.000132
ORF1ab/nsp12173R173HcGccAc11B.1.2430.00007
ORF1ab/nsp12173R173CCgcTgc11B.1.2580.000067
ORF1ab/nsp12173R173LcGccTc11B.1.258.170.000104
ORF1ab/nsp12173R173SCgcAgc11B.1.360.000146
ORF1ab/nsp12173R173RcgCcgT11B.1.360.000146
ORF1ab/nsp12173R173LcGccTc11B.1.36.10.00114
ORF1ab/nsp12173R173SCgcAgc11B.1.36.180.00042
ORF1ab/nsp12173R173CCgcTgc11B.1.36.270.000763
ORF1ab/nsp12173R173CCgcTgc11B.1.36.290.000517
ORF1ab/nsp12173R173CCgcTgc11B.1.3600.012658
ORF1ab/nsp12173R173CCgcTgc11B.1.3770.004566
ORF1ab/nsp12173R173LcGccTc11B.1.4160.001269
ORF1ab/nsp12173R173CCgcTgc11B.1.416.10.001563
ORF1ab/nsp12173R173CCgcTgc11B.1.4220.000812
ORF1ab/nsp12173R173HcGccAc11B.1.4330.003195
ORF1ab/nsp12173R173SCgcAgc11B.1.438.10.000107
ORF1ab/nsp12173R173CCgcTgc11B.1.4530.003236
ORF1ab/nsp12173R173HcGccAc11B.1.466.20.000391
ORF1ab/nsp12173R173HcGccAc11B.1.5240.001406
ORF1ab/nsp12173R173RcgCcgT11B.1.5250.000113
ORF1ab/nsp12173R173LcGccTc11B.1.5250.000113
ORF1ab/nsp12173R173CCgcTgc11B.1.5610.000397
ORF1ab/nsp12173R173CCgcTgc11B.1.5770.000687
ORF1ab/nsp12173R173LcGccTc11B.1.5950.000261
ORF1ab/nsp12173R173HcGccAc11B.1.5960.000087
ORF1ab/nsp12173R173SCgcAgc11B.1.5960.000087
ORF1ab/nsp12173R173CCgcTgc11B.1.6230.000536
ORF1ab/nsp12173R173LcGccTc11B.1.6370.000073
ORF1ab/nsp12173R173delCGC---11B.340.013699
ORF1ab/nsp12173R173LcGccTc11B.400.000364
ORF1ab/nsp12173R173CCgcTgc11B.530.011765
ORF1ab/nsp12173R173delCGC---11B.550.00295
ORF1ab/nsp12173R173CCgcTgc11B.610.005747
ORF1ab/nsp12173R173HcGccAc11C.140.004329
ORF1ab/nsp12173R173LcGccTc11C.180.002591
ORF1ab/nsp12173R173HcGccAc11C.370.000116
ORF1ab/nsp12173R173CCgcTgc11C.380.008065
ORF1ab/nsp12173R173CCgcTgc11N.10.016949
ORF1ab/nsp12173R173RcgCcgT11P.1.120.000484
ORF1ab/nsp12173R173LcGccTc11P.1.120.000484
ORF1ab/nsp12173R173CCgcTgc11P.1.150.000232
ORF1ab/nsp12173R173RcgCcgT11P.20.000187
ORF1ab/nsp12173R173RcgCcgT11Q.10.000126
ORF1ab/nsp12173R173CCgcTgc11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.