CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 169 | P169P | P4561P | syn | ccA | ccG | 1645 | 703 | 0.427356 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169P | P4561P | syn | ccA | ccT | 1645 | 687 | 0.417629 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169P | P4561P | syn | ccA | ccC | 1645 | 255 | 0.155015 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169S | P4561S | nonsyn | Cca | Tca | 1128 | 1126 | 0.998227 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169S | P4561S | nonsyn | CcA | TcC | 1128 | 1 | 0.000886525 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169S | P4561S | nonsyn | CcA | TcG | 1128 | 1 | 0.000886525 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169L | P4561L | nonsyn | cCa | cTa | 164 | 158 | 0.963415 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169L | P4561L | nonsyn | CCa | TTa | 164 | 2 | 0.0121951 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169L | P4561L | nonsyn | cCA | cTG | 164 | 2 | 0.0121951 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169L | P4561L | nonsyn | cCA | cTC | 164 | 1 | 0.00609756 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169L | P4561L | nonsyn | CCA | TTG | 164 | 1 | 0.00609756 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169T | P4561T | nonsyn | Cca | Aca | 156 | 154 | 0.987179 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169T | P4561T | nonsyn | CcA | AcG | 156 | 1 | 0.00641026 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169T | P4561T | nonsyn | CcA | AcC | 156 | 1 | 0.00641026 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169A | P4561A | nonsyn | Cca | Gca | 18 | 18 | 1 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169Q | P4561Q | nonsyn | cCa | cAa | 16 | 16 | 1 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169del | P4561del | del | CCA | --- | 16 | 16 | 1 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169X | P4561X | nonsyn | CCa | TAa | 5 | 4 | 0.8 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169X | P4561X | nonsyn | CCa | TGa | 5 | 1 | 0.2 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169I | P4561I | nonsyn | CCa | ATa | 4 | 3 | 0.75 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169I | P4561I | nonsyn | CCA | ATC | 4 | 1 | 0.25 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169del1 | P4561del1 | del | ccA | cc- | 3 | 2 | 0.666667 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169del1 | P4561del1 | del | Cca | -ca | 3 | 1 | 0.333333 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169del2 | P4561del2 | del | CCa | --a | 2 | 2 | 1 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169R | P4561R | nonsyn | cCa | cGa | 1 | 1 | 1 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169K | P4561K | nonsyn | CCa | AAa | 1 | 1 | 1 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169F | P4561F | nonsyn | CCA | TTC | 1 | 1 | 1 | 13945-13947 |
ORF1ab/nsp12 | 169 | P169M | P4561M | nonsyn | CCA | ATG | 1 | 1 | 1 | 13945-13947 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 703 | 1645 | All | 0.000134 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 687 | 1645 | All | 0.000131 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 255 | 1645 | All | 0.000049 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1126 | 1128 | All | 0.000215 |
ORF1ab/nsp12 | 169 | P169S | CcA | TcC | 1 | 1128 | All | 0 |
ORF1ab/nsp12 | 169 | P169S | CcA | TcG | 1 | 1128 | All | 0 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 433 | 526 | B.1.1.7 | 0.000388 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 87 | 526 | B.1.1.7 | 0.000078 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 6 | 526 | B.1.1.7 | 0.000005 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 218 | 378 | AY.4 | 0.000339 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 158 | 378 | AY.4 | 0.000246 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 2 | 378 | AY.4 | 0.000003 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 245 | 245 | AY.5 | 0.005059 |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 158 | 164 | All | 0.00003 |
ORF1ab/nsp12 | 169 | P169L | CCa | TTa | 2 | 164 | All | 0 |
ORF1ab/nsp12 | 169 | P169L | cCA | cTG | 2 | 164 | All | 0 |
ORF1ab/nsp12 | 169 | P169L | cCA | cTC | 1 | 164 | All | 0 |
ORF1ab/nsp12 | 169 | P169L | CCA | TTG | 1 | 164 | All | 0 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 154 | 156 | All | 0.000029 |
ORF1ab/nsp12 | 169 | P169T | CcA | AcC | 1 | 156 | All | 0 |
ORF1ab/nsp12 | 169 | P169T | CcA | AcG | 1 | 156 | All | 0 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 155 | 155 | B.1.617.2 | 0.000584 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 125 | 126 | AY.100 | 0.005751 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 1 | 126 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 125 | 125 | AY.4 | 0.000195 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 107 | 118 | AY.25 | 0.000644 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 8 | 118 | AY.25 | 0.000048 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 3 | 118 | AY.25 | 0.000018 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 87 | 89 | B.1.1 | 0.001578 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 2 | 89 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 63 | 78 | B.1.617.2 | 0.000237 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 11 | 78 | B.1.617.2 | 0.000041 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 4 | 78 | B.1.617.2 | 0.000015 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 75 | 75 | B.1.1.7 | 0.000067 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 74 | 74 | B.1.1.7 | 0.000066 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 69 | 74 | B.1.2 | 0.000608 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 3 | 74 | B.1.2 | 0.000026 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 2 | 74 | B.1.2 | 0.000018 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 39 | 57 | AY.3 | 0.000388 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 18 | 57 | AY.3 | 0.000179 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 51 | 51 | AY.20 | 0.001982 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 45 | 45 | XA | 1 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 42 | 42 | AY.43 | 0.000186 |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 41 | 41 | AY.26 | 0.001161 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 32 | 32 | B.1.221 | 0.002273 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 32 | 32 | B.1.239 | 0.039072 |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 31 | 31 | B.1.221 | 0.002202 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 27 | 27 | B.1.177.18 | 0.031323 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 14 | 24 | AY.44 | 0.000085 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 7 | 24 | AY.44 | 0.000043 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 3 | 24 | AY.44 | 0.000018 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 23 | 23 | B.1.1.214 | 0.001276 |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 22 | 22 | AY.4 | 0.000034 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 22 | 22 | AY.44 | 0.000134 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 20 | 20 | AY.46.5 | 0.003968 |
ORF1ab/nsp12 | 169 | P169A | Cca | Gca | 18 | 18 | All | 0.000003 |
ORF1ab/nsp12 | 169 | P169del | CCA | --- | 16 | 16 | All | 0.000003 |
ORF1ab/nsp12 | 169 | P169Q | cCa | cAa | 16 | 16 | All | 0.000003 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 15 | 15 | B.1.2 | 0.000132 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 14 | 14 | AY.27 | 0.000906 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 14 | 14 | B.1 | 0.000128 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 14 | 14 | B.1.3 | 0.036649 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 14 | 14 | B.1.409 | 0.010937 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 13 | 13 | AY.39 | 0.000321 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 13 | 13 | Q.8 | 0.002144 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 12 | 12 | AY.102 | 0.000318 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 12 | 12 | B.1.177.21 | 0.000918 |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 11 | 12 | B.1.617.2 | 0.000041 |
ORF1ab/nsp12 | 169 | P169L | cCA | cTG | 1 | 12 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 8 | 11 | B.1.160 | 0.00025 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 3 | 11 | B.1.160 | 0.000094 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 9 | 9 | AY.34 | 0.000873 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 9 | 9 | AY.7.2 | 0.005034 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 8 | 9 | B.1.429 | 0.000188 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 1 | 9 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 169 | P169A | Cca | Gca | 9 | 9 | P.2 | 0.00168 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 8 | 8 | AY.118 | 0.000501 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 8 | 8 | AY.29 | 0.000126 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 8 | 8 | AY.29 | 0.000126 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 8 | 8 | B.1.525 | 0.000905 |
ORF1ab/nsp12 | 169 | P169L | CCa | TTa | 2 | 7 | 0.111111 | |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 2 | 7 | 0.111111 | |
ORF1ab/nsp12 | 169 | P169L | cCA | cTC | 1 | 7 | 0.055556 | |
ORF1ab/nsp12 | 169 | P169L | CCA | TTG | 1 | 7 | 0.055556 | |
ORF1ab/nsp12 | 169 | P169L | cCA | cTG | 1 | 7 | 0.055556 | |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 6 | 7 | AY.42 | 0.000241 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 1 | 7 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 7 | 7 | B.1.177 | 0.000092 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 4 | 6 | 0.222222 | |
ORF1ab/nsp12 | 169 | P169S | CcA | TcG | 1 | 6 | 0.055556 | |
ORF1ab/nsp12 | 169 | P169S | CcA | TcC | 1 | 6 | 0.055556 | |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp12 | 169 | P169X | CCa | TAa | 4 | 5 | All | 0.000001 |
ORF1ab/nsp12 | 169 | P169X | CCa | TGa | 1 | 5 | All | 0 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 5 | 5 | AY.106 | 0.001674 |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 4 | 5 | AY.43 | 0.000018 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 1 | 5 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 5 | 5 | B.1.1.222 | 0.00102 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 5 | 5 | B.1.1.398 | 0.016129 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 5 | 5 | P.1.16 | 0.001871 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 2 | 4 | 0.111111 | |
ORF1ab/nsp12 | 169 | P169T | CcA | AcG | 1 | 4 | 0.055556 | |
ORF1ab/nsp12 | 169 | P169T | CcA | AcC | 1 | 4 | 0.055556 | |
ORF1ab/nsp12 | 169 | P169I | CCa | ATa | 3 | 4 | All | 0.000001 |
ORF1ab/nsp12 | 169 | P169I | CCA | ATC | 1 | 4 | All | 0 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 4 | 4 | AY.16 | 0.001519 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 4 | 4 | AY.24 | 0.001724 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp12 | 169 | P169del | CCA | --- | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 4 | 4 | B.1.408 | 0.01476 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 4 | 4 | B.1.9 | 0.024691 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 4 | 4 | P.1.16 | 0.001496 |
ORF1ab/nsp12 | 169 | P169X | CCa | TAa | 2 | 3 | 0.111111 | |
ORF1ab/nsp12 | 169 | P169X | CCa | TGa | 1 | 3 | 0.055556 | |
ORF1ab/nsp12 | 169 | P169del1 | ccA | cc- | 2 | 3 | All | 0 |
ORF1ab/nsp12 | 169 | P169del1 | Cca | -ca | 1 | 3 | All | 0 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 2 | 3 | AY.103 | 0.000012 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 1 | 3 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 2 | 3 | AY.20 | 0.000078 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 1 | 3 | AY.20 | 0.000039 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 2 | 3 | AY.39.1 | 0.000079 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 1 | 3 | AY.39.1 | 0.00004 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 3 | 3 | B | 0.000383 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp12 | 169 | P169Q | cCa | cAa | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp12 | 169 | P169Q | cCa | cAa | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 169 | P169I | CCa | ATa | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 169 | P169I | CCA | ATC | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 169 | P169del2 | CCa | --a | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 1 | 2 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 1 | 2 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 2 | 2 | B.1.1.47 | 0.010695 |
ORF1ab/nsp12 | 169 | P169Q | cCa | cAa | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp12 | 169 | P169X | CCa | TAa | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp12 | 169 | P169Q | cCa | cAa | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 1 | 2 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 1 | 2 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 2 | 2 | B.1.597 | 0.009259 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp12 | 169 | P169del | CCA | --- | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp12 | 169 | P169F | CCA | TTC | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 169 | P169K | CCa | AAa | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 169 | P169M | CCA | ATG | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 169 | P169R | cCa | cGa | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp12 | 169 | P169R | cCa | cGa | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 169 | P169F | CCA | TTC | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 169 | P169M | CCA | ATG | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 169 | P169K | CCa | AAa | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 169 | P169Q | cCa | cAa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 169 | P169A | Cca | Gca | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 169 | P169Q | cCa | cAa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp12 | 169 | P169Q | cCa | cAa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp12 | 169 | P169del | CCA | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 169 | P169A | Cca | Gca | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp12 | 169 | P169A | Cca | Gca | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 169 | P169del1 | Cca | -ca | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 169 | P169del | CCA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 169 | P169del | CCA | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 169 | P169A | Cca | Gca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 169 | P169del1 | ccA | cc- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 169 | P169I | CCa | ATa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 169 | P169del1 | ccA | cc- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 169 | P169Q | cCa | cAa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 169 | P169I | CCa | ATa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 169 | P169del | CCA | --- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 169 | P169del | CCA | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp12 | 169 | P169del | CCA | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp12 | 169 | P169del | CCA | --- | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp12 | 169 | P169del2 | CCa | --a | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 169 | P169Q | cCa | cAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 169 | P169del | CCA | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp12 | 169 | P169del | CCA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp12 | 169 | P169del2 | CCa | --a | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccC | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp12 | 169 | P169Q | cCa | cAa | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp12 | 169 | P169A | Cca | Gca | 1 | 1 | B.1.306 | 0.005714 |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp12 | 169 | P169A | Cca | Gca | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp12 | 169 | P169Q | cCa | cAa | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 169 | P169A | Cca | Gca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | B.4.1 | 0.018868 |
ORF1ab/nsp12 | 169 | P169P | ccA | ccG | 1 | 1 | B.53 | 0.011765 |
ORF1ab/nsp12 | 169 | P169del | CCA | --- | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 169 | P169A | Cca | Gca | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 169 | P169A | Cca | Gca | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp12 | 169 | P169L | cCa | cTa | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp12 | 169 | P169S | Cca | Tca | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp12 | 169 | P169T | Cca | Aca | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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