CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 163 | Y163Y | Y4555Y | syn | taT | taC | 2260 | 2260 | 1 | 13927-13929 |
ORF1ab/nsp12 | 163 | Y163C | Y4555C | nonsyn | tAt | tGt | 654 | 654 | 1 | 13927-13929 |
ORF1ab/nsp12 | 163 | Y163H | Y4555H | nonsyn | Tat | Cat | 22 | 22 | 1 | 13927-13929 |
ORF1ab/nsp12 | 163 | Y163F | Y4555F | nonsyn | tAt | tTt | 22 | 22 | 1 | 13927-13929 |
ORF1ab/nsp12 | 163 | Y163N | Y4555N | nonsyn | Tat | Aat | 14 | 14 | 1 | 13927-13929 |
ORF1ab/nsp12 | 163 | Y163X | Y4555X | nonsyn | taT | taA | 8 | 5 | 0.625 | 13927-13929 |
ORF1ab/nsp12 | 163 | Y163X | Y4555X | nonsyn | taT | taG | 8 | 3 | 0.375 | 13927-13929 |
ORF1ab/nsp12 | 163 | Y163del | Y4555del | del | TAT | --- | 7 | 7 | 1 | 13927-13929 |
ORF1ab/nsp12 | 163 | Y163I | Y4555I | nonsyn | TAt | ATt | 6 | 3 | 0.5 | 13927-13929 |
ORF1ab/nsp12 | 163 | Y163I | Y4555I | nonsyn | TAT | ATA | 6 | 3 | 0.5 | 13927-13929 |
ORF1ab/nsp12 | 163 | Y163L | Y4555L | nonsyn | tAT | tTA | 4 | 4 | 1 | 13927-13929 |
ORF1ab/nsp12 | 163 | Y163K | Y4555K | nonsyn | TaT | AaA | 3 | 3 | 1 | 13927-13929 |
ORF1ab/nsp12 | 163 | Y163S | Y4555S | nonsyn | tAt | tCt | 3 | 3 | 1 | 13927-13929 |
ORF1ab/nsp12 | 163 | Y163V | Y4555V | nonsyn | TAt | GTt | 2 | 1 | 0.5 | 13927-13929 |
ORF1ab/nsp12 | 163 | Y163V | Y4555V | nonsyn | TAT | GTA | 2 | 1 | 0.5 | 13927-13929 |
ORF1ab/nsp12 | 163 | Y163E | Y4555E | nonsyn | TaT | GaA | 1 | 1 | 1 | 13927-13929 |
ORF1ab/nsp12 | 163 | Y163D | Y4555D | nonsyn | Tat | Gat | 1 | 1 | 1 | 13927-13929 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 2260 | 2260 | All | 0.000432 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1479 | 1479 | AY.39 | 0.036548 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 654 | 654 | All | 0.000125 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 280 | 280 | AY.4 | 0.000436 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 78 | 78 | P.1 | 0.001229 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 76 | 76 | B.1.1.7 | 0.000068 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 76 | 76 | B.1.1.7 | 0.000068 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 73 | 73 | B.1.351 | 0.00217 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 65 | 65 | AY.4 | 0.000101 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 61 | 61 | AY.75 | 0.003417 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 57 | 57 | B.43 | 0.814286 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 37 | 37 | AY.5 | 0.000764 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 35 | 35 | B.1.617.2 | 0.000132 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 35 | 35 | B.1.628 | 0.012333 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 28 | 28 | B.42 | 0.933333 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 27 | 27 | AY.3 | 0.000269 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 27 | 27 | AY.43 | 0.00012 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 26 | 26 | AY.103 | 0.000161 |
ORF1ab/nsp12 | 163 | Y163H | Tat | Cat | 22 | 22 | All | 0.000004 |
ORF1ab/nsp12 | 163 | Y163F | tAt | tTt | 22 | 22 | All | 0.000004 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 22 | 22 | AY.33 | 0.001469 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 19 | 19 | B.1.177 | 0.00025 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 15 | 15 | AY.118 | 0.00094 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 15 | 15 | B.1.617.2 | 0.000056 |
ORF1ab/nsp12 | 163 | Y163N | Tat | Aat | 14 | 14 | All | 0.000003 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 14 | 14 | AY.25 | 0.000084 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 14 | 14 | B.1.2 | 0.000123 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 14 | 14 | B.1.349 | 0.010007 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 12 | 12 | AY.44 | 0.000073 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 12 | 12 | B.1 | 0.00011 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 11 | 11 | AY.43 | 0.000049 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 11 | 11 | AY.61 | 0.001153 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 10 | 10 | AY.44 | 0.000061 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp12 | 163 | Y163X | taT | taA | 5 | 8 | All | 0.000001 |
ORF1ab/nsp12 | 163 | Y163X | taT | taG | 3 | 8 | All | 0.000001 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 8 | 8 | AY.117 | 0.000676 |
ORF1ab/nsp12 | 163 | Y163N | Tat | Aat | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 8 | 8 | AY.9.1 | 0.00067 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 8 | 8 | B.1.177.81 | 0.001515 |
ORF1ab/nsp12 | 163 | Y163del | TAT | --- | 7 | 7 | All | 0.000001 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp12 | 163 | Y163I | TAt | ATt | 3 | 6 | 0.166667 | |
ORF1ab/nsp12 | 163 | Y163I | TAT | ATA | 3 | 6 | 0.166667 | |
ORF1ab/nsp12 | 163 | Y163I | TAT | ATA | 3 | 6 | All | 0.000001 |
ORF1ab/nsp12 | 163 | Y163I | TAt | ATt | 3 | 6 | All | 0.000001 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 6 | 6 | AY.1 | 0.002374 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 6 | 6 | AY.98 | 0.000474 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 6 | 6 | B.1.1.37 | 0.001157 |
ORF1ab/nsp12 | 163 | Y163F | tAt | tTt | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp12 | 163 | Y163H | Tat | Cat | 6 | 6 | B.1.177.44 | 0.003114 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 5 | 5 | B.1.177.62 | 0.005959 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp12 | 163 | Y163L | tAT | tTA | 4 | 4 | All | 0.000001 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 4 | 4 | AY.16 | 0.001519 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp12 | 163 | Y163F | tAt | tTt | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 4 | 4 | B.1.36.31 | 0.007005 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp12 | 163 | Y163X | taT | taA | 3 | 3 | 0.166667 | |
ORF1ab/nsp12 | 163 | Y163N | Tat | Aat | 3 | 3 | 0.166667 | |
ORF1ab/nsp12 | 163 | Y163L | tAT | tTA | 3 | 3 | 0.166667 | |
ORF1ab/nsp12 | 163 | Y163F | tAt | tTt | 3 | 3 | 0.166667 | |
ORF1ab/nsp12 | 163 | Y163K | TaT | AaA | 3 | 3 | 0.166667 | |
ORF1ab/nsp12 | 163 | Y163S | tAt | tCt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp12 | 163 | Y163K | TaT | AaA | 3 | 3 | All | 0.000001 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 3 | 3 | B.1.1.381 | 0.12 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 3 | 3 | B.1.126 | 0.003827 |
ORF1ab/nsp12 | 163 | Y163H | Tat | Cat | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp12 | 163 | Y163V | TAt | GTt | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 163 | Y163V | TAT | GTA | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp12 | 163 | Y163N | Tat | Aat | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp12 | 163 | Y163H | Tat | Cat | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp12 | 163 | Y163V | TAT | GTA | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp12 | 163 | Y163V | TAt | GTt | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp12 | 163 | Y163del | TAT | --- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp12 | 163 | Y163F | tAt | tTt | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 2 | 2 | B.1.619.1 | 0.001283 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp12 | 163 | Y163D | Tat | Gat | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 163 | Y163E | TaT | GaA | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 163 | Y163H | Tat | Cat | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp12 | 163 | Y163N | Tat | Aat | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 163 | Y163F | tAt | tTt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 163 | Y163H | Tat | Cat | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp12 | 163 | Y163H | Tat | Cat | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp12 | 163 | Y163F | tAt | tTt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 163 | Y163X | taT | taG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 163 | Y163H | Tat | Cat | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 163 | Y163S | tAt | tCt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 163 | Y163H | Tat | Cat | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 163 | Y163H | Tat | Cat | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 163 | Y163F | tAt | tTt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 163 | Y163L | tAT | tTA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 163 | Y163D | Tat | Gat | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 163 | Y163X | taT | taA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 163 | Y163E | TaT | GaA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 163 | Y163del | TAT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 163 | Y163S | tAt | tCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 163 | Y163X | taT | taA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 163 | Y163del | TAT | --- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 163 | Y163del | TAT | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp12 | 163 | Y163H | Tat | Cat | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | B.1.1.17 | 0.016667 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | B.1.1.229 | 0.005747 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 163 | Y163del | TAT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp12 | 163 | Y163H | Tat | Cat | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp12 | 163 | Y163H | Tat | Cat | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp12 | 163 | Y163H | Tat | Cat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | B.1.36.21 | 0.00216 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | B.1.369.1 | 0.027027 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp12 | 163 | Y163F | tAt | tTt | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp12 | 163 | Y163S | tAt | tCt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp12 | 163 | Y163F | tAt | tTt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 163 | Y163X | taT | taG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp12 | 163 | Y163H | Tat | Cat | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp12 | 163 | Y163F | tAt | tTt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp12 | 163 | Y163X | taT | taG | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp12 | 163 | Y163C | tAt | tGt | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp12 | 163 | Y163Y | taT | taC | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp12 | 163 | Y163del | TAT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 163 | Y163F | tAt | tTt | 1 | 1 | Q.2 | 0.000613 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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