CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 141

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12141T141IT4533InonsynaCaaTa501650150.99980113861-13863
ORF1ab/nsp12141T141IT4533InonsynaCAaTT501610.00019936213861-13863
ORF1ab/nsp12141T141TT4533TsynacAacG3503310.94571413861-13863
ORF1ab/nsp12141T141TT4533TsynacAacT350110.031428613861-13863
ORF1ab/nsp12141T141TT4533TsynacAacC35080.022857113861-13863
ORF1ab/nsp12141T141AT4533AnonsynAcaGca278278113861-13863
ORF1ab/nsp12141T141PT4533PnonsynAcaCca6262113861-13863
ORF1ab/nsp12141T141ST4533SnonsynAcaTca15100.66666713861-13863
ORF1ab/nsp12141T141ST4533SnonsynAcATcG1540.26666713861-13863
ORF1ab/nsp12141T141ST4533SnonsynAcATcT1510.066666713861-13863
ORF1ab/nsp12141T141delT4533deldelACA---1111113861-13863
ORF1ab/nsp12141T141RT4533RnonsynaCaaGa740.57142913861-13863
ORF1ab/nsp12141T141RT4533RnonsynaCAaGG730.42857113861-13863
ORF1ab/nsp12141T141KT4533KnonsynaCaaAa420.513861-13863
ORF1ab/nsp12141T141KT4533KnonsynaCAaAG420.513861-13863
ORF1ab/nsp12141T141del1T4533del1delAca-ca11113861-13863
ORF1ab/nsp12141T141VT4533VnonsynACaGTa11113861-13863
ORF1ab/nsp12141T141LT4533LnonsynACATTG11113861-13863

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12141T141IaCaaTa50155016All0.000959
ORF1ab/nsp12141T141IaCAaTT15016All0
ORF1ab/nsp12141T141IaCaaTa10661066B.1.930.995331
ORF1ab/nsp12141T141IaCaaTa638638B.1.1.70.000571
ORF1ab/nsp12141T141IaCaaTa440440AY.40.000685
ORF1ab/nsp12141T141TacAacG331350All0.000063
ORF1ab/nsp12141T141TacAacT11350All0.000002
ORF1ab/nsp12141T141TacAacC8350All0.000002
ORF1ab/nsp12141T141IaCaaTa303303B.1.20.002668
ORF1ab/nsp12141T141AAcaGca278278All0.000053
ORF1ab/nsp12141T141TacAacG210212B.1.1.70.000188
ORF1ab/nsp12141T141TacAacC2212B.1.1.70.000002
ORF1ab/nsp12141T141IaCaaTa205205AY.30.002039
ORF1ab/nsp12141T141IaCaaTa195195B.1.617.20.000734
ORF1ab/nsp12141T141IaCaaTa157157AY.440.000956
ORF1ab/nsp12141T141IaCaaTa142142B.1.10.002576
ORF1ab/nsp12141T141IaCaaTa132132B.1.5640.056218
ORF1ab/nsp12141T141IaCaaTa119119AY.250.000716
ORF1ab/nsp12141T141IaCaaTa113113B.1.1770.001488
ORF1ab/nsp12141T141IaCaaTa8888B.10.000806
ORF1ab/nsp12141T141IaCaaTa8484AY.1030.000522
ORF1ab/nsp12141T141IaCaaTa7575AY.340.007272
ORF1ab/nsp12141T141IaCaaTa7171B.1.2580.004725
ORF1ab/nsp12141T141IaCaaTa6666AY.430.000292
ORF1ab/nsp12141T141PAcaCca6262All0.000012
ORF1ab/nsp12141T141AAcaGca6161B.1.617.20.00023
ORF1ab/nsp12141T141IaCaaTa5858B.1.1.4340.020216
ORF1ab/nsp12141T141IaCaaTa5454B.1.1.3710.5625
ORF1ab/nsp12141T141IaCaaTa4747B.1.2340.006201
ORF1ab/nsp12141T141IaCaaTa4444B.1.2430.003062
ORF1ab/nsp12141T141AAcaGca4242AY.610.004401
ORF1ab/nsp12141T141PAcaCca3838P.10.000599
ORF1ab/nsp12141T141IaCaaTa3636B.1.1.3370.129496
ORF1ab/nsp12141T141IaCaaTa3333P.10.00052
ORF1ab/nsp12141T141IaCaaTa3131AY.1020.000822
ORF1ab/nsp12141T141IaCaaTa3131AY.200.001205
ORF1ab/nsp12141T141AAcaGca3030B.1.20.000264
ORF1ab/nsp12141T141IaCaaTa3030B.1.6210.002656
ORF1ab/nsp12141T141IaCaaTa2525B.1.1.4320.031646
ORF1ab/nsp12141T141IaCaaTa2525B.1.1.4860.039432
ORF1ab/nsp12141T141TacAacG2424B.1.3750.019672
ORF1ab/nsp12141T141IaCaaTa2222B.1.3510.000654
ORF1ab/nsp12141T141TacAacG2121AY.540.002002
ORF1ab/nsp12141T141IaCaaTa2121AY.9.20.000771
ORF1ab/nsp12141T141IaCaaTa1919AY.330.001269
ORF1ab/nsp12141T141AAcaGca1818B.1.1.70.000016
ORF1ab/nsp12141T141IaCaaTa1717B.1.1600.00053
ORF1ab/nsp12141T141IaCaaTa1717B.1.4290.0004
ORF1ab/nsp12141T141IaCaaTa1616AY.4.50.00172
ORF1ab/nsp12141T141IaCaaTa1616B.1.5260.000376
ORF1ab/nsp12141T141SAcaTca1015All0.000002
ORF1ab/nsp12141T141SAcATcG415All0.000001
ORF1ab/nsp12141T141SAcATcT115All0
ORF1ab/nsp12141T141AAcaGca1515AY.1000.00069
ORF1ab/nsp12141T141IaCaaTa1515AY.390.000371
ORF1ab/nsp12141T141TacAacG1515AY.40.000023
ORF1ab/nsp12141T141IaCaaTa1414AY.470.000435
ORF1ab/nsp12141T141IaCaaTa1414B.1.1390.010264
ORF1ab/nsp12141T141IaCaaTa1313AY.116.10.004049
ORF1ab/nsp12141T141IaCaaTa1212AY.4.20.00026
ORF1ab/nsp12141T141IaCaaTa1212B.1.177.730.006795
ORF1ab/nsp12141T141IaCaaTa1212P.1.140.000574
ORF1ab/nsp12141T141delACA---1111All0.000002
ORF1ab/nsp12141T141IaCaaTa1111AY.260.000311
ORF1ab/nsp12141T141IaCaaTa1111AY.290.000174
ORF1ab/nsp12141T141AAcaGca1111AY.880.009726
ORF1ab/nsp12141T141IaCaaTa1010AY.1190.000353
ORF1ab/nsp12141T141AAcaGca1010AY.30.000099
ORF1ab/nsp12141T141SAcaTca910B.1.1.70.000008
ORF1ab/nsp12141T141SAcATcT110B.1.1.70.000001
ORF1ab/nsp12141T141PAcaCca99AY.1130.001282
ORF1ab/nsp12141T141IaCaaTa99AY.360.001334
ORF1ab/nsp12141T141IaCaaTa99AY.420.000362
ORF1ab/nsp12141T141PAcaCca99AY.90.000608
ORF1ab/nsp12141T141TacAacG79B.10.000064
ORF1ab/nsp12141T141TacAacT29B.10.000018
ORF1ab/nsp12141T141IaCaaTa99B.1.1.4200.009054
ORF1ab/nsp12141T141AAcaGca88AY.430.000035
ORF1ab/nsp12141T141IaCaaTa88AY.98.10.000387
ORF1ab/nsp12141T141IaCaaTa88B.1.1.2160.007124
ORF1ab/nsp12141T141IaCaaTa88B.1.1.5190.000318
ORF1ab/nsp12141T141IaCaaTa88B.1.360.001167
ORF1ab/nsp12141T141IaCaaTa88B.1.3890.008016
ORF1ab/nsp12141T141AAcaGca88P.10.000126
ORF1ab/nsp12141T141RaCaaGa47All0.000001
ORF1ab/nsp12141T141RaCAaGG37All0.000001
ORF1ab/nsp12141T141IaCaaTa77AY.1170.000592
ORF1ab/nsp12141T141IaCaaTa77AY.1180.000439
ORF1ab/nsp12141T141AAcaGca77AY.160.002658
ORF1ab/nsp12141T141TacAacG67AY.30.00006
ORF1ab/nsp12141T141TacAacC17AY.30.00001
ORF1ab/nsp12141T141AAcaGca77AY.40.000011
ORF1ab/nsp12141T141IaCaaTa77AY.460.000729
ORF1ab/nsp12141T141IaCaaTa77AY.90.000473
ORF1ab/nsp12141T141IaCaaTa77B.1.1.2140.000388
ORF1ab/nsp12141T141IaCaaTa77B.1.2210.000497
ORF1ab/nsp12141T141IaCaaTa66AY.1000.000276
ORF1ab/nsp12141T141AAcaGca66AY.75.10.001082
ORF1ab/nsp12141T141IaCaaTa66B.1.1.2220.001224
ORF1ab/nsp12141T141TacAacG46B.1.20.000035
ORF1ab/nsp12141T141TacAacT26B.1.20.000018
ORF1ab/nsp12141T141AAcaGca55AY.350.001165
ORF1ab/nsp12141T141IaCaaTa55AY.60.000206
ORF1ab/nsp12141T141IaCaaTa55B.1.1.1710.018382
ORF1ab/nsp12141T141IaCaaTa55B.1.1.3070.012658
ORF1ab/nsp12141T141IaCaaTa55B.1.1.3620.02809
ORF1ab/nsp12141T141IaCaaTa55B.1.1280.003177
ORF1ab/nsp12141T141IaCaaTa55B.1.5170.002135
ORF1ab/nsp12141T141TacAacC55B.6.60.004444
ORF1ab/nsp12141T141IaCaaTa55P.1.150.001162
ORF1ab/nsp12141T141SAcATcG440.222222
ORF1ab/nsp12141T141IaCaaTa44A0.001548
ORF1ab/nsp12141T141KaCAaAG24All0
ORF1ab/nsp12141T141KaCaaAa24All0
ORF1ab/nsp12141T141IaCaaTa44AY.1060.00134
ORF1ab/nsp12141T141IaCaaTa44AY.3.10.000341
ORF1ab/nsp12141T141AAcaGca44AY.440.000024
ORF1ab/nsp12141T141TacAacG44AY.440.000024
ORF1ab/nsp12141T141IaCaaTa44AY.450.000487
ORF1ab/nsp12141T141AAcaGca44AY.470.000124
ORF1ab/nsp12141T141IaCaaTa44AY.50.000083
ORF1ab/nsp12141T141IaCaaTa44AY.610.000419
ORF1ab/nsp12141T141IaCaaTa44AY.70.000784
ORF1ab/nsp12141T141TacAacG44AY.98.10.000194
ORF1ab/nsp12141T141IaCaaTa44B.1.1.3380.068966
ORF1ab/nsp12141T141IaCaaTa44B.1.1.3720.002755
ORF1ab/nsp12141T141IaCaaTa44B.1.1.4090.011331
ORF1ab/nsp12141T141IaCaaTa44B.1.1.700.001364
ORF1ab/nsp12141T141TacAacG44B.1.438.10.000429
ORF1ab/nsp12141T141IaCaaTa44B.1.5090.003463
ORF1ab/nsp12141T141IaCaaTa44B.1.5670.013333
ORF1ab/nsp12141T141IaCaaTa44Q.10.000505
ORF1ab/nsp12141T141IaCaaTa230.111111
ORF1ab/nsp12141T141IaCAaTT130.055556
ORF1ab/nsp12141T141AAcaGca33AY.1020.00008
ORF1ab/nsp12141T141TacAacG33AY.1030.000019
ORF1ab/nsp12141T141IaCaaTa33AY.1160.00086
ORF1ab/nsp12141T141IaCaaTa33AY.1200.000112
ORF1ab/nsp12141T141IaCaaTa33AY.1210.000406
ORF1ab/nsp12141T141IaCaaTa33AY.130.000483
ORF1ab/nsp12141T141AAcaGca33AY.130.000483
ORF1ab/nsp12141T141AAcaGca33AY.260.000085
ORF1ab/nsp12141T141IaCaaTa33AY.320.001597
ORF1ab/nsp12141T141AAcaGca33AY.390.000074
ORF1ab/nsp12141T141PAcaCca33AY.440.000018
ORF1ab/nsp12141T141IaCaaTa33AY.46.60.000217
ORF1ab/nsp12141T141IaCaaTa33AY.690.00056
ORF1ab/nsp12141T141IaCaaTa33AY.75.10.000541
ORF1ab/nsp12141T141IaCaaTa33AY.980.000237
ORF1ab/nsp12141T141IaCaaTa33AY.99.20.000276
ORF1ab/nsp12141T141IaCaaTa33B0.000383
ORF1ab/nsp12141T141IaCaaTa33B.1.1.1010.03
ORF1ab/nsp12141T141IaCaaTa33B.1.1.1530.003286
ORF1ab/nsp12141T141IaCaaTa33B.1.1.370.000579
ORF1ab/nsp12141T141IaCaaTa33B.1.177.210.000229
ORF1ab/nsp12141T141IaCaaTa33B.1.177.570.000843
ORF1ab/nsp12141T141IaCaaTa33B.1.177.600.000655
ORF1ab/nsp12141T141IaCaaTa33B.1.177.860.00055
ORF1ab/nsp12141T141TacAacT33B.1.3690.000856
ORF1ab/nsp12141T141IaCaaTa33B.1.4000.001287
ORF1ab/nsp12141T141IaCaaTa33B.1.5750.00091
ORF1ab/nsp12141T141IaCaaTa33B.1.5770.002062
ORF1ab/nsp12141T141IaCaaTa33B.1.5960.000261
ORF1ab/nsp12141T141TacAacG23B.1.617.20.000008
ORF1ab/nsp12141T141TacAacT13B.1.617.20.000004
ORF1ab/nsp12141T141IaCaaTa33B.1.6280.001057
ORF1ab/nsp12141T141IaCaaTa33B.60.00273
ORF1ab/nsp12141T141TacAacG33C.370.000348
ORF1ab/nsp12141T141IaCaaTa33D.20.000225
ORF1ab/nsp12141T141IaCaaTa33P.1.130.002695
ORF1ab/nsp12141T141IaCaaTa33P.20.00056
ORF1ab/nsp12141T141IaCaaTa33R.10.00027
ORF1ab/nsp12141T141KaCAaAG220.111111
ORF1ab/nsp12141T141RaCAaGG220.111111
ORF1ab/nsp12141T141IaCaaTa22A.30.004193
ORF1ab/nsp12141T141IaCaaTa22AD.20.000438
ORF1ab/nsp12141T141IaCaaTa22AY.10.000791
ORF1ab/nsp12141T141IaCaaTa22AY.1090.001479
ORF1ab/nsp12141T141IaCaaTa22AY.1100.000225
ORF1ab/nsp12141T141IaCaaTa22AY.1130.000285
ORF1ab/nsp12141T141AAcaGca22AY.1190.000071
ORF1ab/nsp12141T141IaCaaTa22AY.16.10.00094
ORF1ab/nsp12141T141AAcaGca22AY.200.000078
ORF1ab/nsp12141T141IaCaaTa22AY.230.000139
ORF1ab/nsp12141T141AAcaGca22AY.250.000012
ORF1ab/nsp12141T141TacAacG22AY.260.000057
ORF1ab/nsp12141T141AAcaGca22AY.330.000134
ORF1ab/nsp12141T141TacAacG22AY.420.00008
ORF1ab/nsp12141T141AAcaGca22AY.520.001629
ORF1ab/nsp12141T141AAcaGca22AY.550.001835
ORF1ab/nsp12141T141IaCaaTa22AY.740.000231
ORF1ab/nsp12141T141IaCaaTa22AY.850.000854
ORF1ab/nsp12141T141IaCaaTa22AY.9.10.000167
ORF1ab/nsp12141T141TacAacG22B.1.10.000036
ORF1ab/nsp12141T141IaCaaTa22B.1.1.1810.009091
ORF1ab/nsp12141T141IaCaaTa22B.1.1.3120.003824
ORF1ab/nsp12141T141IaCaaTa22B.1.1.330.000842
ORF1ab/nsp12141T141IaCaaTa22B.1.1.390.001019
ORF1ab/nsp12141T141IaCaaTa22B.1.1.4290.009217
ORF1ab/nsp12141T141IaCaaTa22B.1.1.4370.020833
ORF1ab/nsp12141T141IaCaaTa22B.1.1.4480.004065
ORF1ab/nsp12141T141IaCaaTa22B.1.1.4850.033333
ORF1ab/nsp12141T141PAcaCca22B.1.1.70.000002
ORF1ab/nsp12141T141RaCaaGa22B.1.1.70.000002
ORF1ab/nsp12141T141delACA---22B.1.1.70.000002
ORF1ab/nsp12141T141IaCaaTa22B.1.177.160.001329
ORF1ab/nsp12141T141IaCaaTa22B.1.177.430.002954
ORF1ab/nsp12141T141IaCaaTa22B.1.177.460.001837
ORF1ab/nsp12141T141IaCaaTa22B.1.177.540.001213
ORF1ab/nsp12141T141IaCaaTa22B.1.177.810.000379
ORF1ab/nsp12141T141IaCaaTa22B.1.2360.004107
ORF1ab/nsp12141T141IaCaaTa22B.1.2390.002442
ORF1ab/nsp12141T141IaCaaTa22B.1.258.170.000208
ORF1ab/nsp12141T141IaCaaTa22B.1.3110.000549
ORF1ab/nsp12141T141IaCaaTa22B.1.3290.001215
ORF1ab/nsp12141T141TacAacG22B.1.4290.000047
ORF1ab/nsp12141T141RaCaaGa12B.1.4370.020833
ORF1ab/nsp12141T141RaCAaGG12B.1.4370.020833
ORF1ab/nsp12141T141IaCaaTa22B.1.466.20.000782
ORF1ab/nsp12141T141IaCaaTa22B.1.4700.002809
ORF1ab/nsp12141T141IaCaaTa22B.1.5350.057143
ORF1ab/nsp12141T141IaCaaTa22B.1.5870.003795
ORF1ab/nsp12141T141TacAacG22B.1.5960.000174
ORF1ab/nsp12141T141IaCaaTa22B.1.6180.008065
ORF1ab/nsp12141T141IaCaaTa22B.1.6370.000146
ORF1ab/nsp12141T141IaCaaTa22P.1.170.000324
ORF1ab/nsp12141T141IaCaaTa22P.1.70.000639
ORF1ab/nsp12141T141IaCaaTa22Z.10.00578
ORF1ab/nsp12141T141TacAacT110.055556
ORF1ab/nsp12141T141RaCaaGa11A0.000387
ORF1ab/nsp12141T141IaCaaTa11A.10.000282
ORF1ab/nsp12141T141IaCaaTa11A.2.40.003367
ORF1ab/nsp12141T141IaCaaTa11A.23.10.000704
ORF1ab/nsp12141T141LACATTG11All0
ORF1ab/nsp12141T141VACaGTa11All0
ORF1ab/nsp12141T141del1Aca-ca11All0
ORF1ab/nsp12141T141IaCaaTa11AY.1070.000466
ORF1ab/nsp12141T141IaCaaTa11AY.1140.000231
ORF1ab/nsp12141T141AAcaGca11AY.1140.000231
ORF1ab/nsp12141T141IaCaaTa11AY.1150.005208
ORF1ab/nsp12141T141AAcaGca11AY.1170.000085
ORF1ab/nsp12141T141TacAacG11AY.1190.000035
ORF1ab/nsp12141T141delACA---11AY.1200.000037
ORF1ab/nsp12141T141AAcaGca11AY.1200.000037
ORF1ab/nsp12141T141IaCaaTa11AY.120.2.10.000498
ORF1ab/nsp12141T141AAcaGca11AY.230.00007
ORF1ab/nsp12141T141delACA---11AY.250.000006
ORF1ab/nsp12141T141TacAacG11AY.250.000006
ORF1ab/nsp12141T141delACA---11AY.30.00001
ORF1ab/nsp12141T141AAcaGca11AY.3.10.000085
ORF1ab/nsp12141T141TacAacG11AY.340.000097
ORF1ab/nsp12141T141TacAacT11AY.390.000025
ORF1ab/nsp12141T141AAcaGca11AY.39.10.00004
ORF1ab/nsp12141T141IaCaaTa11AY.4.40.000409
ORF1ab/nsp12141T141SAcaTca11AY.420.00004
ORF1ab/nsp12141T141PAcaCca11AY.430.000004
ORF1ab/nsp12141T141TacAacG11AY.430.000004
ORF1ab/nsp12141T141AAcaGca11AY.450.000122
ORF1ab/nsp12141T141TacAacG11AY.460.000104
ORF1ab/nsp12141T141AAcaGca11AY.460.000104
ORF1ab/nsp12141T141IaCaaTa11AY.46.40.000165
ORF1ab/nsp12141T141IaCaaTa11AY.480.000465
ORF1ab/nsp12141T141AAcaGca11AY.540.000095
ORF1ab/nsp12141T141IaCaaTa11AY.550.000917
ORF1ab/nsp12141T141IaCaaTa11AY.570.000656
ORF1ab/nsp12141T141AAcaGca11AY.600.000938
ORF1ab/nsp12141T141IaCaaTa11AY.630.000387
ORF1ab/nsp12141T141delACA---11AY.670.000464
ORF1ab/nsp12141T141IaCaaTa11AY.680.000274
ORF1ab/nsp12141T141IaCaaTa11AY.730.000665
ORF1ab/nsp12141T141AAcaGca11AY.730.000665
ORF1ab/nsp12141T141IaCaaTa11AY.750.000056
ORF1ab/nsp12141T141AAcaGca11AY.810.001992
ORF1ab/nsp12141T141IaCaaTa11AY.840.000437
ORF1ab/nsp12141T141IaCaaTa11AY.880.000884
ORF1ab/nsp12141T141AAcaGca11AY.9.20.000037
ORF1ab/nsp12141T141IaCaaTa11AY.990.001049
ORF1ab/nsp12141T141TacAacG11AY.990.001049
ORF1ab/nsp12141T141IaCaaTa11AZ.10.000867
ORF1ab/nsp12141T141AAcaGca11B.10.000009
ORF1ab/nsp12141T141KaCaaAa11B.1.10.000018
ORF1ab/nsp12141T141AAcaGca11B.1.10.000018
ORF1ab/nsp12141T141VACaGTa11B.1.10.000018
ORF1ab/nsp12141T141IaCaaTa11B.1.1.10.000327
ORF1ab/nsp12141T141delACA---11B.1.1.10.000327
ORF1ab/nsp12141T141delACA---11B.1.1.1390.022727
ORF1ab/nsp12141T141IaCaaTa11B.1.1.1610.003534
ORF1ab/nsp12141T141IaCaaTa11B.1.1.1700.001247
ORF1ab/nsp12141T141IaCaaTa11B.1.1.1760.000439
ORF1ab/nsp12141T141delACA---11B.1.1.2360.006897
ORF1ab/nsp12141T141IaCaaTa11B.1.1.2580.003257
ORF1ab/nsp12141T141IaCaaTa11B.1.1.2630.001558
ORF1ab/nsp12141T141IaCaaTa11B.1.1.2660.012195
ORF1ab/nsp12141T141IaCaaTa11B.1.1.280.000311
ORF1ab/nsp12141T141IaCaaTa11B.1.1.2840.000107
ORF1ab/nsp12141T141IaCaaTa11B.1.1.3160.000925
ORF1ab/nsp12141T141IaCaaTa11B.1.1.3170.000412
ORF1ab/nsp12141T141IaCaaTa11B.1.1.3180.000302
ORF1ab/nsp12141T141delACA---11B.1.1.3480.000796
ORF1ab/nsp12141T141IaCaaTa11B.1.1.3480.000796
ORF1ab/nsp12141T141IaCaaTa11B.1.1.3490.010309
ORF1ab/nsp12141T141IaCaaTa11B.1.1.3660.015873
ORF1ab/nsp12141T141IaCaaTa11B.1.1.3890.006061
ORF1ab/nsp12141T141TacAacG11B.1.1.4370.010417
ORF1ab/nsp12141T141IaCaaTa11B.1.1.470.005348
ORF1ab/nsp12141T141LACATTG11B.1.1.70.000001
ORF1ab/nsp12141T141IaCaaTa11B.1.1570.002985
ORF1ab/nsp12141T141IaCaaTa11B.1.1580.02381
ORF1ab/nsp12141T141IaCaaTa11B.1.160.120.00641
ORF1ab/nsp12141T141IaCaaTa11B.1.160.310.008065
ORF1ab/nsp12141T141IaCaaTa11B.1.1620.005025
ORF1ab/nsp12141T141AAcaGca11B.1.1770.000013
ORF1ab/nsp12141T141IaCaaTa11B.1.177.120.000152
ORF1ab/nsp12141T141IaCaaTa11B.1.177.230.003236
ORF1ab/nsp12141T141IaCaaTa11B.1.177.320.00135
ORF1ab/nsp12141T141IaCaaTa11B.1.177.870.000728
ORF1ab/nsp12141T141IaCaaTa11B.1.2010.005682
ORF1ab/nsp12141T141IaCaaTa11B.1.2200.01087
ORF1ab/nsp12141T141IaCaaTa11B.1.221.10.002907
ORF1ab/nsp12141T141TacAacT11B.1.2400.000216
ORF1ab/nsp12141T141IaCaaTa11B.1.2410.000812
ORF1ab/nsp12141T141TacAacG11B.1.2540.025
ORF1ab/nsp12141T141IaCaaTa11B.1.258.140.00098
ORF1ab/nsp12141T141IaCaaTa11B.1.3060.005714
ORF1ab/nsp12141T141IaCaaTa11B.1.3560.001727
ORF1ab/nsp12141T141IaCaaTa11B.1.36.360.000602
ORF1ab/nsp12141T141IaCaaTa11B.1.36.80.001
ORF1ab/nsp12141T141IaCaaTa11B.1.3620.001541
ORF1ab/nsp12141T141IaCaaTa11B.1.3690.000285
ORF1ab/nsp12141T141IaCaaTa11B.1.4090.000781
ORF1ab/nsp12141T141AAcaGca11B.1.4270.00005
ORF1ab/nsp12141T141KaCaaAa11B.1.4270.00005
ORF1ab/nsp12141T141IaCaaTa11B.1.4270.00005
ORF1ab/nsp12141T141TacAacG11B.1.4370.020833
ORF1ab/nsp12141T141IaCaaTa11B.1.438.10.000107
ORF1ab/nsp12141T141IaCaaTa11B.1.4530.003236
ORF1ab/nsp12141T141IaCaaTa11B.1.4690.00361
ORF1ab/nsp12141T141IaCaaTa11B.1.4710.002732
ORF1ab/nsp12141T141IaCaaTa11B.1.4800.002488
ORF1ab/nsp12141T141IaCaaTa11B.1.5250.000113
ORF1ab/nsp12141T141AAcaGca11B.1.5260.000024
ORF1ab/nsp12141T141TacAacG11B.1.5260.000024
ORF1ab/nsp12141T141IaCaaTa11B.1.5610.000397
ORF1ab/nsp12141T141IaCaaTa11B.1.564.10.001577
ORF1ab/nsp12141T141IaCaaTa11B.1.5760.000907
ORF1ab/nsp12141T141IaCaaTa11B.1.5950.000261
ORF1ab/nsp12141T141IaCaaTa11B.1.6090.000479
ORF1ab/nsp12141T141TacAacG11B.1.617.10.000129
ORF1ab/nsp12141T141IaCaaTa11B.1.6230.000536
ORF1ab/nsp12141T141IaCaaTa11B.1.6270.00202
ORF1ab/nsp12141T141IaCaaTa11B.1.6320.006711
ORF1ab/nsp12141T141IaCaaTa11B.1.6340.003425
ORF1ab/nsp12141T141delACA---11B.340.013699
ORF1ab/nsp12141T141IaCaaTa11C.110.010638
ORF1ab/nsp12141T141IaCaaTa11C.36.30.000567
ORF1ab/nsp12141T141IaCaaTa11C.370.000116
ORF1ab/nsp12141T141TacAacG11P.10.000016
ORF1ab/nsp12141T141TacAacG11P.1.140.000048
ORF1ab/nsp12141T141IaCaaTa11P.40.003802
ORF1ab/nsp12141T141del1Aca-ca11Q.10.000126
ORF1ab/nsp12141T141IaCaaTa11Q.20.000613
ORF1ab/nsp12141T141IaCaaTa11Q.30.000145
ORF1ab/nsp12141T141TacAacG11Q.80.000165
ORF1ab/nsp12141T141IaCaaTa11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.