CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 140 & Codon = Tac

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12140D140YD4532YnonsynGacTac308030780.99935113858-13860

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12140D140YGacTac30783080All0.000589
ORF1ab/nsp12140D140YGacTac967968AY.40.001505
ORF1ab/nsp12140D140YGacTac463463B.1.36.211
ORF1ab/nsp12140D140YGacTac204204B.1.1.70.000183
ORF1ab/nsp12140D140YGacTac152152AY.460.01582
ORF1ab/nsp12140D140YGacTac145145AY.430.000642
ORF1ab/nsp12140D140YGacTac8585AY.50.001755
ORF1ab/nsp12140D140YGacTac7171B.1.617.20.000267
ORF1ab/nsp12140D140YGacTac6868AY.270.004401
ORF1ab/nsp12140D140YGacTac6767B.1.438.10.007187
ORF1ab/nsp12140D140YGacTac6161AY.250.000367
ORF1ab/nsp12140D140YGacTac6161B.1.617.10.007867
ORF1ab/nsp12140D140YGacTac5050B.1.5230.122549
ORF1ab/nsp12140D140YGacTac4545AY.1030.000279
ORF1ab/nsp12140D140YGacTac4444B.1.1.5190.001747
ORF1ab/nsp12140D140YGacTac3939B.1.5950.010177
ORF1ab/nsp12140D140YGacTac3232AY.260.000906
ORF1ab/nsp12140D140YGacTac3030B.1.2890.079787
ORF1ab/nsp12140D140YGacTac2929B.1.2340.003826
ORF1ab/nsp12140D140YGacTac2828B.1.1770.000369
ORF1ab/nsp12140D140YGacTac2626B.1.20.000229
ORF1ab/nsp12140D140YGacTac2525B.10.000229
ORF1ab/nsp12140D140YGacTac2222AY.440.000134
ORF1ab/nsp12140D140YGacTac2121AY.390.000519
ORF1ab/nsp12140D140YGacTac2020AY.370.006321
ORF1ab/nsp12140D140YGacTac2020B.1.3510.000595
ORF1ab/nsp12140D140YGacTac2020B.1.4270.00101
ORF1ab/nsp12140D140YGacTac1313AY.30.000129
ORF1ab/nsp12140D140YGacTac1212B.1.4290.000282
ORF1ab/nsp12140D140YGacTac1010A.230.105263
ORF1ab/nsp12140D140YGacTac99AY.1020.000239
ORF1ab/nsp12140D140YGacTac99B.1.1.2160.008014
ORF1ab/nsp12140D140YGacTac88AY.1190.000282
ORF1ab/nsp12140D140YGacTac88AY.290.000126
ORF1ab/nsp12140D140YGacTac88AY.940.003541
ORF1ab/nsp12140D140YGacTac88B.1.10.000145
ORF1ab/nsp12140D140YGacTac77AY.4.50.000752
ORF1ab/nsp12140D140YGacTac77AY.9.20.000257
ORF1ab/nsp12140D140YGacTac66AY.980.000474
ORF1ab/nsp12140D140YGacTac66AY.98.10.000291
ORF1ab/nsp12140D140YGacTac66B.1.5510.007742
ORF1ab/nsp12140D140YGacTac55AY.230.000349
ORF1ab/nsp12140D140YGacTac55AY.330.000334
ORF1ab/nsp12140D140YGacTac55AY.60.000206
ORF1ab/nsp12140D140YGacTac55AY.700.001043
ORF1ab/nsp12140D140YGacTac55B.1.5650.004052
ORF1ab/nsp12140D140YGacTac44AY.5.40.001107
ORF1ab/nsp12140D140YGacTac44B.1.2430.000278
ORF1ab/nsp12140D140YGacTac44Q.10.000505
ORF1ab/nsp12140D140YGacTac33AY.1130.000427
ORF1ab/nsp12140D140YGacTac33AY.1200.000112
ORF1ab/nsp12140D140YGacTac33AY.130.000483
ORF1ab/nsp12140D140YGacTac33AY.200.000117
ORF1ab/nsp12140D140YGacTac33AY.4.20.000065
ORF1ab/nsp12140D140YGacTac33AY.450.000365
ORF1ab/nsp12140D140YGacTac33AY.99.20.000276
ORF1ab/nsp12140D140YGacTac33B.1.1.2220.000612
ORF1ab/nsp12140D140YGacTac33B.1.1600.000094
ORF1ab/nsp12140D140YGacTac33B.1.5260.000071
ORF1ab/nsp12140D140YGacTac33P.20.00056
ORF1ab/nsp12140D140YGacTac120.055556
ORF1ab/nsp12140D140YGacTac22AY.1160.000574
ORF1ab/nsp12140D140YGacTac22AY.1170.000169
ORF1ab/nsp12140D140YGacTac22AY.1180.000125
ORF1ab/nsp12140D140YGacTac22AY.140.000176
ORF1ab/nsp12140D140YGacTac22AY.4.40.000818
ORF1ab/nsp12140D140YGacTac22AY.670.000929
ORF1ab/nsp12140D140YGacTac22AY.750.000112
ORF1ab/nsp12140D140YGacTac22AY.75.10.000361
ORF1ab/nsp12140D140YGacTac22AY.9.10.000167
ORF1ab/nsp12140D140YGacTac22AY.920.000575
ORF1ab/nsp12140D140YGacTac22B.1.1.2940.002532
ORF1ab/nsp12140D140YGacTac22B.1.1.3120.003824
ORF1ab/nsp12140D140YGacTac22B.1.1.5160.133333
ORF1ab/nsp12140D140YGacTac22B.1.2210.000142
ORF1ab/nsp12140D140YGacTac22B.1.3960.001411
ORF1ab/nsp12140D140YGacTac22N.90.011905
ORF1ab/nsp12140D140YGacTac11AA.30.027027
ORF1ab/nsp12140D140YGacTac11AA.40.009091
ORF1ab/nsp12140D140YGacTac11AY.1000.000046
ORF1ab/nsp12140D140YGacTac11AY.1040.001984
ORF1ab/nsp12140D140YGacTac11AY.1050.000643
ORF1ab/nsp12140D140YGacTac11AY.1100.000113
ORF1ab/nsp12140D140YGacTac11AY.120.10.000321
ORF1ab/nsp12140D140YGacTac11AY.120.20.001285
ORF1ab/nsp12140D140YGacTac11AY.3.10.000085
ORF1ab/nsp12140D140YGacTac11AY.320.000532
ORF1ab/nsp12140D140YGacTac11AY.380.000499
ORF1ab/nsp12140D140YGacTac11AY.4.30.000842
ORF1ab/nsp12140D140YGacTac11AY.400.000964
ORF1ab/nsp12140D140YGacTac11AY.410.000294
ORF1ab/nsp12140D140YGacTac11AY.420.00004
ORF1ab/nsp12140D140YGacTac11AY.46.60.000072
ORF1ab/nsp12140D140YGacTac11AY.510.000909
ORF1ab/nsp12140D140YGacTac11AY.610.000105
ORF1ab/nsp12140D140YGacTac11AY.620.000436
ORF1ab/nsp12140D140YGacTac11AY.630.000387
ORF1ab/nsp12140D140YGacTac11AY.640.000595
ORF1ab/nsp12140D140YGacTac11AY.650.000533
ORF1ab/nsp12140D140YGacTac11AY.660.00107
ORF1ab/nsp12140D140YGacTac11AY.7.20.000559
ORF1ab/nsp12140D140YGacTac11AY.830.001724
ORF1ab/nsp12140D140YGacTac11B0.000128
ORF1ab/nsp12140D140YGacTac11B.1.1.10.000327
ORF1ab/nsp12140D140YGacTac11B.1.1.100.001115
ORF1ab/nsp12140D140YGacTac11B.1.1.1760.000439
ORF1ab/nsp12140D140YGacTac11B.1.1.2140.000055
ORF1ab/nsp12140D140YGacTac11B.1.1.2690.001353
ORF1ab/nsp12140D140YGacTac11B.1.1.2700.010309
ORF1ab/nsp12140D140YGacTac11B.1.1.280.000311
ORF1ab/nsp12140D140YGacTac11B.1.1.3060.000438
ORF1ab/nsp12140D140YGacTac11B.1.1.3350.012987
ORF1ab/nsp12140D140YGacTac11B.1.1.390.00051
ORF1ab/nsp12140D140YGacTac11B.1.1.4160.000905
ORF1ab/nsp12140D140YGacTac11B.1.1.4210.030303
ORF1ab/nsp12140D140YGacTac11B.1.1.4340.000349
ORF1ab/nsp12140D140YGacTac11B.1.1.930.025641
ORF1ab/nsp12140D140YGacTac11B.1.1040.00369
ORF1ab/nsp12140D140YGacTac11B.1.160.300.002976
ORF1ab/nsp12140D140YGacTac11B.1.177.450.000381
ORF1ab/nsp12140D140YGacTac11B.1.177.460.000918
ORF1ab/nsp12140D140YGacTac11B.1.177.560.000668
ORF1ab/nsp12140D140YGacTac11B.1.177.70.000165
ORF1ab/nsp12140D140YGacTac11B.1.177.750.001041
ORF1ab/nsp12140D140YGacTac11B.1.2580.000067
ORF1ab/nsp12140D140YGacTac11B.1.258.170.000104
ORF1ab/nsp12140D140YGacTac11B.1.351.20.000303
ORF1ab/nsp12140D140YGacTac11B.1.360.000146
ORF1ab/nsp12140D140YGacTac11B.1.36.10.00114
ORF1ab/nsp12140D140YGacTac11B.1.3660.004878
ORF1ab/nsp12140D140YGacTac11B.1.4280.00102
ORF1ab/nsp12140D140YGacTac11B.1.5090.000866
ORF1ab/nsp12140D140YGacTac11B.120.00641
ORF1ab/nsp12140D140YGacTac11B.30.000831
ORF1ab/nsp12140D140YGacTac11C.350.000774
ORF1ab/nsp12140D140YGacTac11C.36.30.000567
ORF1ab/nsp12140D140YGacTac11C.370.000116
ORF1ab/nsp12140D140YGacTac11D.20.000075
ORF1ab/nsp12140D140YGacTac11N.30.005814
ORF1ab/nsp12140D140YGacTac11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.