CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 140

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp12	140	D140D	D4532D	syn	gaC	gaT	121029	121029	1	13858-13860
ORF1ab/nsp12	140	D140Y	D4532Y	nonsyn	Gac	Tac	3080	3078	0.999351	13858-13860
ORF1ab/nsp12	140	D140Y	D4532Y	nonsyn	GaC	TaT	3080	2	0.000649351	13858-13860
ORF1ab/nsp12	140	D140G	D4532G	nonsyn	gAc	gGc	279	274	0.982079	13858-13860
ORF1ab/nsp12	140	D140G	D4532G	nonsyn	gAC	gGT	279	5	0.0179211	13858-13860
ORF1ab/nsp12	140	D140N	D4532N	nonsyn	Gac	Aac	104	104	1	13858-13860
ORF1ab/nsp12	140	D140A	D4532A	nonsyn	gAc	gCc	49	41	0.836735	13858-13860
ORF1ab/nsp12	140	D140A	D4532A	nonsyn	gAC	gCT	49	8	0.163265	13858-13860
ORF1ab/nsp12	140	D140E	D4532E	nonsyn	gaC	gaA	38	34	0.894737	13858-13860
ORF1ab/nsp12	140	D140E	D4532E	nonsyn	gaC	gaG	38	4	0.105263	13858-13860
ORF1ab/nsp12	140	D140H	D4532H	nonsyn	Gac	Cac	13	13	1	13858-13860
ORF1ab/nsp12	140	D140del	D4532del	del	GAC	---	12	12	1	13858-13860
ORF1ab/nsp12	140	D140V	D4532V	nonsyn	gAc	gTc	12	7	0.583333	13858-13860
ORF1ab/nsp12	140	D140V	D4532V	nonsyn	gAC	gTT	12	3	0.25	13858-13860
ORF1ab/nsp12	140	D140V	D4532V	nonsyn	gAC	gTG	12	1	0.0833333	13858-13860
ORF1ab/nsp12	140	D140V	D4532V	nonsyn	gAC	gTA	12	1	0.0833333	13858-13860
ORF1ab/nsp12	140	D140del2	D4532del2	del	gAC	g--	5	5	1	13858-13860
ORF1ab/nsp12	140	D140F	D4532F	nonsyn	GAc	TTc	4	3	0.75	13858-13860
ORF1ab/nsp12	140	D140F	D4532F	nonsyn	GAC	TTT	4	1	0.25	13858-13860
ORF1ab/nsp12	140	D140del1	D4532del1	del	gaC	ga-	2	1	0.5	13858-13860
ORF1ab/nsp12	140	D140del1	D4532del1	del	Gac	-ac	2	1	0.5	13858-13860
ORF1ab/nsp12	140	D140K	D4532K	nonsyn	GaC	AaG	1	1	1	13858-13860

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp12	140	D140D	gaC	gaT	121029	121029	All	0.023148
ORF1ab/nsp12	140	D140D	gaC	gaT	62500	62500	P.1	0.984624
ORF1ab/nsp12	140	D140D	gaC	gaT	20904	20904	P.1.14	0.999235
ORF1ab/nsp12	140	D140D	gaC	gaT	6140	6140	P.1.17	0.993206
ORF1ab/nsp12	140	D140D	gaC	gaT	4278	4278	P.1.15	0.993959
ORF1ab/nsp12	140	D140D	gaC	gaT	3689	3689	P.1.10	0.994072
ORF1ab/nsp12	140	D140D	gaC	gaT	3117	3117	P.1.7	0.995211
ORF1ab/nsp12	140	D140Y	Gac	Tac	3078	3080	All	0.000589
ORF1ab/nsp12	140	D140Y	GaC	TaT	2	3080	All	0
ORF1ab/nsp12	140	D140D	gaC	gaT	3029	3029	P.1.1	0.962198
ORF1ab/nsp12	140	D140D	gaC	gaT	2625	2625	P.1.16	0.982043
ORF1ab/nsp12	140	D140D	gaC	gaT	1953	1953	P.1.12	0.945305
ORF1ab/nsp12	140	D140D	gaC	gaT	1179	1179	B.1.1.7	0.001055
ORF1ab/nsp12	140	D140D	gaC	gaT	1143	1143	P.1.17.1	1
ORF1ab/nsp12	140	D140D	gaC	gaT	1105	1105	P.1.13	0.992812
ORF1ab/nsp12	140	D140D	gaC	gaT	1023	1023	P.1.4	0.999023
ORF1ab/nsp12	140	D140Y	Gac	Tac	967	968	AY.4	0.001505
ORF1ab/nsp12	140	D140Y	GaC	TaT	1	968	AY.4	0.000002
ORF1ab/nsp12	140	D140D	gaC	gaT	864	864	P.1.2	0.998844
ORF1ab/nsp12	140	D140D	gaC	gaT	681	681	AY.54	0.064931
ORF1ab/nsp12	140	D140D	gaC	gaT	615	615	AY.4	0.000957
ORF1ab/nsp12	140	D140D	gaC	gaT	511	511	P.1.6	0.994163
ORF1ab/nsp12	140	D140Y	Gac	Tac	463	463	B.1.36.21	1
ORF1ab/nsp12	140	D140D	gaC	gaT	354	354	B.1.2	0.003117
ORF1ab/nsp12	140	D140G	gAc	gGc	274	279	All	0.000052
ORF1ab/nsp12	140	D140G	gAC	gGT	5	279	All	0.000001
ORF1ab/nsp12	140	D140D	gaC	gaT	260	260	B.1.617.2	0.000979
ORF1ab/nsp12	140	D140D	gaC	gaT	247	247	B.1	0.002262
ORF1ab/nsp12	140	D140D	gaC	gaT	236	236	B.1.1	0.004281
ORF1ab/nsp12	140	D140D	gaC	gaT	209	209	P.1.8	1
ORF1ab/nsp12	140	D140D	gaC	gaT	208	208	P.1.9	1
ORF1ab/nsp12	140	D140Y	Gac	Tac	204	204	B.1.1.7	0.000183
ORF1ab/nsp12	140	D140D	gaC	gaT	198	198	AY.4.2	0.004294
ORF1ab/nsp12	140	D140D	gaC	gaT	183	183	AY.44	0.001114
ORF1ab/nsp12	140	D140D	gaC	gaT	159	159	AY.25	0.000956
ORF1ab/nsp12	140	D140D	gaC	gaT	155	155	B.1.127	0.340659
ORF1ab/nsp12	140	D140Y	Gac	Tac	152	152	AY.46	0.01582
ORF1ab/nsp12	140	D140Y	Gac	Tac	145	145	AY.43	0.000642
ORF1ab/nsp12	140	D140D	gaC	gaT	141	141	B.1.429	0.003318
ORF1ab/nsp12	140	D140G	gAc	gGc	138	138	AY.3	0.001373
ORF1ab/nsp12	140	D140D	gaC	gaT	134	134	AY.43	0.000594
ORF1ab/nsp12	140	D140D	gaC	gaT	123	123	P.1.10.1	1
ORF1ab/nsp12	140	D140D	gaC	gaT	117	117	B.1.240	0.025221
ORF1ab/nsp12	140	D140N	Gac	Aac	104	104	All	0.00002
ORF1ab/nsp12	140	D140D	gaC	gaT	98	98	P.1.11	1
ORF1ab/nsp12	140	D140D	gaC	gaT	97	97	AY.119	0.003425
ORF1ab/nsp12	140	D140D	gaC	gaT	93	93	B.1.349	0.066476
ORF1ab/nsp12	140	D140D	gaC	gaT	92	92	B.1.177	0.001211
ORF1ab/nsp12	140	D140D	gaC	gaT	85	85	AY.103	0.000528
ORF1ab/nsp12	140	D140Y	Gac	Tac	85	85	AY.5	0.001755
ORF1ab/nsp12	140	D140D	gaC	gaT	78	78	AY.13	0.012556
ORF1ab/nsp12	140	D140D	gaC	gaT	78	78	B.1.177.86	0.014309
ORF1ab/nsp12	140	D140D	gaC	gaT	74	74	B.1.622	0.961039
ORF1ab/nsp12	140	D140Y	Gac	Tac	71	71	B.1.617.2	0.000267
ORF1ab/nsp12	140	D140D	gaC	gaT	69	69	AY.20	0.002682
ORF1ab/nsp12	140	D140D	gaC	gaT	69	69	B.1.243	0.004801
ORF1ab/nsp12	140	D140Y	Gac	Tac	68	68	AY.27	0.004401
ORF1ab/nsp12	140	D140D	gaC	gaT	68	68	B.1.427	0.003434
ORF1ab/nsp12	140	D140Y	Gac	Tac	67	67	B.1.438.1	0.007187
ORF1ab/nsp12	140	D140Y	Gac	Tac	61	61	AY.25	0.000367
ORF1ab/nsp12	140	D140Y	Gac	Tac	61	61	B.1.617.1	0.007867
ORF1ab/nsp12	140	D140D	gaC	gaT	57	57	B.1.575	0.017294
ORF1ab/nsp12	140	D140D	gaC	gaT	56	56	AY.3	0.000557
ORF1ab/nsp12	140	D140D	gaC	gaT	51	51	B.1.566	0.980769
ORF1ab/nsp12	140	D140Y	Gac	Tac	50	50	B.1.523	0.122549
ORF1ab/nsp12	140	D140D	gaC	gaT	50	50	B.1.591	0.531915
ORF1ab/nsp12	140	D140A	gAc	gCc	41	49	All	0.000008
ORF1ab/nsp12	140	D140A	gAC	gCT	8	49	All	0.000002
ORF1ab/nsp12	140	D140N	Gac	Aac	46	46	B.1.177	0.000606
ORF1ab/nsp12	140	D140D	gaC	gaT	46	46	B.1.258.17	0.004783
ORF1ab/nsp12	140	D140Y	Gac	Tac	45	45	AY.103	0.000279
ORF1ab/nsp12	140	D140D	gaC	gaT	44	44	AY.98.1	0.002131
ORF1ab/nsp12	140	D140D	gaC	gaT	44	44	AY.99.2	0.004055
ORF1ab/nsp12	140	D140Y	Gac	Tac	44	44	B.1.1.519	0.001747
ORF1ab/nsp12	140	D140D	gaC	gaT	42	42	C.37	0.004875
ORF1ab/nsp12	140	D140D	gaC	gaT	42	42	R.1	0.00378
ORF1ab/nsp12	140	D140D	gaC	gaT	41	41	B.1.1.519	0.001628
ORF1ab/nsp12	140	D140D	gaC	gaT	41	41	B.1.160	0.001279
ORF1ab/nsp12	140	D140Y	Gac	Tac	39	39	B.1.595	0.010177
ORF1ab/nsp12	140	D140E	gaC	gaA	34	38	All	0.000007
ORF1ab/nsp12	140	D140E	gaC	gaG	4	38	All	0.000001
ORF1ab/nsp12	140	D140D	gaC	gaT	38	38	B.1.221	0.002699
ORF1ab/nsp12	140	D140D	gaC	gaT	36	36	B.1.1.28	0.011204
ORF1ab/nsp12	140	D140D	gaC	gaT	36	36	B.1.609	0.017258
ORF1ab/nsp12	140	D140D	gaC	gaT	34	34	AY.102	0.000901
ORF1ab/nsp12	140	D140D	gaC	gaT	34	34	B.1.1.528	0.163462
ORF1ab/nsp12	140	D140D	gaC	gaT	34	34	B.1.526	0.000799
ORF1ab/nsp12	140	D140D	gaC	gaT	33	33	B.1.351	0.000981
ORF1ab/nsp12	140	D140Y	Gac	Tac	32	32	AY.26	0.000906
ORF1ab/nsp12	140	D140D	gaC	gaT	32	32	AY.5	0.000661
ORF1ab/nsp12	140	D140G	gAc	gGc	32	32	B.1.1.7	0.000029
ORF1ab/nsp12	140	D140D	gaC	gaT	31	31	AY.4.4	0.012684
ORF1ab/nsp12	140	D140D	gaC	gaT	30	30	AY.39.1	0.001188
ORF1ab/nsp12	140	D140Y	Gac	Tac	30	30	B.1.289	0.079787
ORF1ab/nsp12	140	D140D	gaC	gaT	29	29	B.1.177.65	0.019295
ORF1ab/nsp12	140	D140Y	Gac	Tac	29	29	B.1.234	0.003826
ORF1ab/nsp12	140	D140D	gaC	gaT	29	29	B.1.258	0.00193
ORF1ab/nsp12	140	D140D	gaC	gaT	29	29	P.1.3	1
ORF1ab/nsp12	140	D140Y	Gac	Tac	28	28	B.1.177	0.000369
ORF1ab/nsp12	140	D140D	gaC	gaT	28	28	B.1.177.35	0.01935
ORF1ab/nsp12	140	D140D	gaC	gaT	28	28	B.1.621	0.002479
ORF1ab/nsp12	140	D140D	gaC	gaT	27	27	AY.120	0.001004
ORF1ab/nsp12	140	D140Y	Gac	Tac	26	26	B.1.2	0.000229
ORF1ab/nsp12	140	D140D	gaC	gaT	26	26	B.1.234	0.003431
ORF1ab/nsp12	140	D140D	gaC	gaT	25	25	AY.39	0.000618
ORF1ab/nsp12	140	D140Y	Gac	Tac	25	25	B.1	0.000229
ORF1ab/nsp12	140	D140D	gaC	gaT	24	24	B.1.177.81	0.004544
ORF1ab/nsp12	140	D140D	gaC	gaT	24	24	P.1.10.2	1
ORF1ab/nsp12	140	D140D	gaC	gaT	24	24	P.2	0.004479
ORF1ab/nsp12	140	D140D	gaC	gaT	22	22	AY.26	0.000623
ORF1ab/nsp12	140	D140Y	Gac	Tac	22	22	AY.44	0.000134
ORF1ab/nsp12	140	D140Y	Gac	Tac	21	21	AY.39	0.000519
ORF1ab/nsp12	140	D140Y	Gac	Tac	20	20	AY.37	0.006321
ORF1ab/nsp12	140	D140Y	Gac	Tac	20	20	B.1.351	0.000595
ORF1ab/nsp12	140	D140Y	Gac	Tac	20	20	B.1.427	0.00101
ORF1ab/nsp12	140	D140D	gaC	gaT	19	19	B.1.1.317	0.007822
ORF1ab/nsp12	140	D140D	gaC	gaT	19	19	B.1.177.21	0.001453
ORF1ab/nsp12	140	D140D	gaC	gaT	18	18	B.1.577	0.012371
ORF1ab/nsp12	140	D140D	gaC	gaT	17	17	B.1.1.47	0.090909
ORF1ab/nsp12	140	D140D	gaC	gaT	16	16	AY.104	0.031746
ORF1ab/nsp12	140	D140D	gaC	gaT	16	16	AY.47	0.000498
ORF1ab/nsp12	140	D140D	gaC	gaT	16	16	AY.9.2	0.000588
ORF1ab/nsp12	140	D140D	gaC	gaT	15	15	AY.100	0.00069
ORF1ab/nsp12	140	D140D	gaC	gaT	15	15	AY.29	0.000237
ORF1ab/nsp12	140	D140D	gaC	gaT	14	14	AY.85	0.00598
ORF1ab/nsp12	140	D140H	Gac	Cac	13	13	All	0.000002
ORF1ab/nsp12	140	D140D	gaC	gaT	13	13	AY.101	0.006376
ORF1ab/nsp12	140	D140Y	Gac	Tac	13	13	AY.3	0.000129
ORF1ab/nsp12	140	D140D	gaC	gaT	13	13	B.1.1.306	0.005699
ORF1ab/nsp12	140	D140D	gaC	gaT	13	13	P.1.5	1
ORF1ab/nsp12	140	D140del	GAC	---	12	12	All	0.000002
ORF1ab/nsp12	140	D140V	gAc	gTc	7	12	All	0.000001
ORF1ab/nsp12	140	D140V	gAC	gTT	3	12	All	0.000001
ORF1ab/nsp12	140	D140V	gAC	gTG	1	12	All	0
ORF1ab/nsp12	140	D140V	gAC	gTA	1	12	All	0
ORF1ab/nsp12	140	D140D	gaC	gaT	12	12	AY.33	0.000801
ORF1ab/nsp12	140	D140D	gaC	gaT	12	12	AY.42	0.000483
ORF1ab/nsp12	140	D140D	gaC	gaT	12	12	B.1.1.291	0.008909
ORF1ab/nsp12	140	D140D	gaC	gaT	12	12	B.1.400	0.005148
ORF1ab/nsp12	140	D140Y	Gac	Tac	12	12	B.1.429	0.000282
ORF1ab/nsp12	140	D140G	gAc	gGc	12	12	B.1.617.2	0.000045
ORF1ab/nsp12	140	D140N	Gac	Aac	11	11	AY.103	0.000068
ORF1ab/nsp12	140	D140D	gaC	gaT	11	11	AY.6	0.000452
ORF1ab/nsp12	140	D140D	gaC	gaT	11	11	B.1.596	0.000959
ORF1ab/nsp12	140	D140D	gaC	gaT	10	10	A.2.5	0.00499
ORF1ab/nsp12	140	D140Y	Gac	Tac	10	10	A.23	0.105263
ORF1ab/nsp12	140	D140D	gaC	gaT	10	10	AY.23	0.000697
ORF1ab/nsp12	140	D140A	gAc	gCc	10	10	AY.3	0.000099
ORF1ab/nsp12	140	D140N	Gac	Aac	10	10	AY.46.6	0.000722
ORF1ab/nsp12	140	D140D	gaC	gaT	10	10	AY.61	0.001048
ORF1ab/nsp12	140	D140N	Gac	Aac	10	10	B.1.1.7	0.000009
ORF1ab/nsp12	140	D140A	gAc	gCc	10	10	B.1.1.7	0.000009
ORF1ab/nsp12	140	D140Y	Gac	Tac	9	9	AY.102	0.000239
ORF1ab/nsp12	140	D140D	gaC	gaT	9	9	AY.46.6	0.00065
ORF1ab/nsp12	140	D140D	gaC	gaT	9	9	AY.95	0.006849
ORF1ab/nsp12	140	D140Y	Gac	Tac	9	9	B.1.1.216	0.008014
ORF1ab/nsp12	140	D140D	gaC	gaT	9	9	B.1.1.253	0.022556
ORF1ab/nsp12	140	D140D	gaC	gaT	9	9	B.1.1.63	0.003472
ORF1ab/nsp12	140	D140E	gaC	gaA	9	9	B.1.258.14	0.008824
ORF1ab/nsp12	140	D140D	gaC	gaT	9	9	Q.1	0.001137
ORF1ab/nsp12	140	D140Y	Gac	Tac	8	8	AY.119	0.000282
ORF1ab/nsp12	140	D140Y	Gac	Tac	8	8	AY.29	0.000126
ORF1ab/nsp12	140	D140D	gaC	gaT	8	8	AY.34	0.000776
ORF1ab/nsp12	140	D140D	gaC	gaT	8	8	AY.9.1	0.00067
ORF1ab/nsp12	140	D140Y	Gac	Tac	8	8	AY.94	0.003541
ORF1ab/nsp12	140	D140Y	Gac	Tac	8	8	B.1.1	0.000145
ORF1ab/nsp12	140	D140G	gAc	gGc	8	8	B.1.1	0.000145
ORF1ab/nsp12	140	D140G	gAc	gGc	8	8	B.1.1.159	0.037383
ORF1ab/nsp12	140	D140D	gaC	gaT	8	8	B.1.1.222	0.001632
ORF1ab/nsp12	140	D140G	gAc	gGc	8	8	B.1.351	0.000238
ORF1ab/nsp12	140	D140D	gaC	gaT	8	8	B.1.36.29	0.004139
ORF1ab/nsp12	140	D140D	gaC	gaT	8	8	B.1.525	0.000905
ORF1ab/nsp12	140	D140D	gaC	gaT	8	8	C.37.1	0.020942
ORF1ab/nsp12	140	D140D	gaC	gaT	7	7	A.1	0.001973
ORF1ab/nsp12	140	D140D	gaC	gaT	7	7	AY.4.2.1	0.001043
ORF1ab/nsp12	140	D140Y	Gac	Tac	7	7	AY.4.5	0.000752
ORF1ab/nsp12	140	D140Y	Gac	Tac	7	7	AY.9.2	0.000257
ORF1ab/nsp12	140	D140D	gaC	gaT	7	7	B.1.1.311	0.002507
ORF1ab/nsp12	140	D140D	gaC	gaT	7	7	B.1.1.33	0.002946
ORF1ab/nsp12	140	D140D	gaC	gaT	7	7	B.1.1.391	0.059829
ORF1ab/nsp12	140	D140G	gAc	gGc	7	7	B.1.160	0.000218
ORF1ab/nsp12	140	D140G	gAc	gGc	7	7	B.1.2	0.000062
ORF1ab/nsp12	140	D140D	gaC	gaT	7	7	B.1.36	0.001021
ORF1ab/nsp12	140	D140D	gaC	gaT	7	7	B.1.438.1	0.000751
ORF1ab/nsp12	140	D140D	gaC	gaT	7	7	B.1.588	0.006369
ORF1ab/nsp12	140	D140D	gaC	gaT	7	7	B.1.620	0.006623
ORF1ab/nsp12	140	D140D	gaC	gaT	7	7	D.2	0.000525
ORF1ab/nsp12	140	D140A	gAC	gCT	6	6		0.333333
ORF1ab/nsp12	140	D140D	gaC	gaT	6	6	AY.113	0.000854
ORF1ab/nsp12	140	D140D	gaC	gaT	6	6	AY.117	0.000507
ORF1ab/nsp12	140	D140D	gaC	gaT	6	6	AY.121	0.000812
ORF1ab/nsp12	140	D140G	gAc	gGc	6	6	AY.42	0.000241
ORF1ab/nsp12	140	D140G	gAc	gGc	6	6	AY.43	0.000027
ORF1ab/nsp12	140	D140D	gaC	gaT	6	6	AY.45	0.00073
ORF1ab/nsp12	140	D140Y	Gac	Tac	6	6	AY.98	0.000474
ORF1ab/nsp12	140	D140Y	Gac	Tac	6	6	AY.98.1	0.000291
ORF1ab/nsp12	140	D140D	gaC	gaT	6	6	B.1.177.77	0.004357
ORF1ab/nsp12	140	D140E	gaC	gaA	6	6	B.1.351.5	0.003597
ORF1ab/nsp12	140	D140Y	Gac	Tac	6	6	B.1.551	0.007742
ORF1ab/nsp12	140	D140del2	gAC	g--	5	5	All	0.000001
ORF1ab/nsp12	140	D140D	gaC	gaT	5	5	AY.16	0.001898
ORF1ab/nsp12	140	D140Y	Gac	Tac	5	5	AY.23	0.000349
ORF1ab/nsp12	140	D140Y	Gac	Tac	5	5	AY.33	0.000334
ORF1ab/nsp12	140	D140Y	Gac	Tac	5	5	AY.6	0.000206
ORF1ab/nsp12	140	D140Y	Gac	Tac	5	5	AY.70	0.001043
ORF1ab/nsp12	140	D140D	gaC	gaT	5	5	B.1.1.369	0.002231
ORF1ab/nsp12	140	D140E	gaC	gaA	3	5	B.1.1.7	0.000003
ORF1ab/nsp12	140	D140E	gaC	gaG	2	5	B.1.1.7	0.000002
ORF1ab/nsp12	140	D140D	gaC	gaT	5	5	B.1.177.33	0.008224
ORF1ab/nsp12	140	D140D	gaC	gaT	5	5	B.1.177.42	0.004472
ORF1ab/nsp12	140	D140D	gaC	gaT	5	5	B.1.311	0.001373
ORF1ab/nsp12	140	D140D	gaC	gaT	5	5	B.1.396	0.003529
ORF1ab/nsp12	140	D140D	gaC	gaT	5	5	B.1.416	0.006345
ORF1ab/nsp12	140	D140D	gaC	gaT	5	5	B.1.497	0.001574
ORF1ab/nsp12	140	D140N	Gac	Aac	5	5	B.1.564	0.002129
ORF1ab/nsp12	140	D140Y	Gac	Tac	5	5	B.1.565	0.004052
ORF1ab/nsp12	140	D140D	gaC	gaT	5	5	B.1.617.1	0.000645
ORF1ab/nsp12	140	D140D	gaC	gaT	5	5	B.1.623	0.002682
ORF1ab/nsp12	140	D140D	gaC	gaT	5	5	P.3	0.007974
ORF1ab/nsp12	140	D140D	gaC	gaT	5	5	Q.8	0.000825
ORF1ab/nsp12	140	D140F	GAc	TTc	3	4		0.166667
ORF1ab/nsp12	140	D140F	GAC	TTT	1	4		0.055556
ORF1ab/nsp12	140	D140D	gaC	gaT	4	4	A	0.001548
ORF1ab/nsp12	140	D140D	gaC	gaT	4	4	AD.2	0.000876
ORF1ab/nsp12	140	D140F	GAc	TTc	3	4	All	0.000001
ORF1ab/nsp12	140	D140F	GAC	TTT	1	4	All	0
ORF1ab/nsp12	140	D140D	gaC	gaT	4	4	AY.105	0.002572
ORF1ab/nsp12	140	D140D	gaC	gaT	4	4	AY.114	0.000924
ORF1ab/nsp12	140	D140D	gaC	gaT	4	4	AY.118	0.000251
ORF1ab/nsp12	140	D140D	gaC	gaT	4	4	AY.14	0.000352
ORF1ab/nsp12	140	D140D	gaC	gaT	4	4	AY.30	0.001583
ORF1ab/nsp12	140	D140D	gaC	gaT	4	4	AY.36	0.000593
ORF1ab/nsp12	140	D140A	gAc	gCc	4	4	AY.4	0.000006
ORF1ab/nsp12	140	D140G	gAc	gGc	4	4	AY.4	0.000006
ORF1ab/nsp12	140	D140Y	Gac	Tac	4	4	AY.5.4	0.001107
ORF1ab/nsp12	140	D140D	gaC	gaT	4	4	AY.75	0.000224
ORF1ab/nsp12	140	D140D	gaC	gaT	4	4	AY.8	0.002424
ORF1ab/nsp12	140	D140D	gaC	gaT	4	4	B	0.000511
ORF1ab/nsp12	140	D140D	gaC	gaT	4	4	B.1.1.214	0.000222
ORF1ab/nsp12	140	D140D	gaC	gaT	4	4	B.1.1.523	0.00625
ORF1ab/nsp12	140	D140D	gaC	gaT	4	4	B.1.177.57	0.001124
ORF1ab/nsp12	140	D140Y	Gac	Tac	4	4	B.1.243	0.000278
ORF1ab/nsp12	140	D140D	gaC	gaT	4	4	B.1.466.2	0.001565
ORF1ab/nsp12	140	D140D	gaC	gaT	4	4	B.1.595	0.001044
ORF1ab/nsp12	140	D140D	gaC	gaT	4	4	B.1.637	0.000292
ORF1ab/nsp12	140	D140Y	Gac	Tac	4	4	Q.1	0.000505
ORF1ab/nsp12	140	D140D	gaC	gaT	3	3	A.23.1	0.002113
ORF1ab/nsp12	140	D140Y	Gac	Tac	3	3	AY.113	0.000427
ORF1ab/nsp12	140	D140Y	Gac	Tac	3	3	AY.120	0.000112
ORF1ab/nsp12	140	D140Y	Gac	Tac	3	3	AY.13	0.000483
ORF1ab/nsp12	140	D140Y	Gac	Tac	3	3	AY.20	0.000117
ORF1ab/nsp12	140	D140D	gaC	gaT	3	3	AY.28	0.005671
ORF1ab/nsp12	140	D140N	Gac	Aac	3	3	AY.4	0.000005
ORF1ab/nsp12	140	D140V	gAc	gTc	3	3	AY.4	0.000005
ORF1ab/nsp12	140	D140Y	Gac	Tac	3	3	AY.4.2	0.000065
ORF1ab/nsp12	140	D140E	gaC	gaA	3	3	AY.44	0.000018
ORF1ab/nsp12	140	D140Y	Gac	Tac	3	3	AY.45	0.000365
ORF1ab/nsp12	140	D140D	gaC	gaT	3	3	AY.46.4	0.000494
ORF1ab/nsp12	140	D140N	Gac	Aac	3	3	AY.47	0.000093
ORF1ab/nsp12	140	D140D	gaC	gaT	3	3	AY.5.4	0.00083
ORF1ab/nsp12	140	D140G	gAc	gGc	3	3	AY.54	0.000286
ORF1ab/nsp12	140	D140D	gaC	gaT	3	3	AY.65	0.001599
ORF1ab/nsp12	140	D140D	gaC	gaT	3	3	AY.75.1	0.000541
ORF1ab/nsp12	140	D140D	gaC	gaT	3	3	AY.98	0.000237
ORF1ab/nsp12	140	D140Y	Gac	Tac	3	3	AY.99.2	0.000276
ORF1ab/nsp12	140	D140Y	Gac	Tac	3	3	B.1.1.222	0.000612
ORF1ab/nsp12	140	D140D	gaC	gaT	3	3	B.1.1.241	0.006211
ORF1ab/nsp12	140	D140D	gaC	gaT	3	3	B.1.1.294	0.003797
ORF1ab/nsp12	140	D140D	gaC	gaT	3	3	B.1.1.372	0.002066
ORF1ab/nsp12	140	D140D	gaC	gaT	3	3	B.1.1.409	0.008499
ORF1ab/nsp12	140	D140D	gaC	gaT	3	3	B.1.1.50	0.002037
ORF1ab/nsp12	140	D140G	gAc	gGc	3	3	B.1.1.519	0.000119
ORF1ab/nsp12	140	D140D	gaC	gaT	3	3	B.1.126	0.003827
ORF1ab/nsp12	140	D140D	gaC	gaT	3	3	B.1.147	0.002268
ORF1ab/nsp12	140	D140G	gAc	gGc	3	3	B.1.149	0.010274
ORF1ab/nsp12	140	D140Y	Gac	Tac	3	3	B.1.160	0.000094
ORF1ab/nsp12	140	D140G	gAc	gGc	3	3	B.1.177	0.00004
ORF1ab/nsp12	140	D140D	gaC	gaT	3	3	B.1.177.7	0.000495
ORF1ab/nsp12	140	D140D	gaC	gaT	3	3	B.1.258.23	0.071429
ORF1ab/nsp12	140	D140D	gaC	gaT	3	3	B.1.305	0.006452
ORF1ab/nsp12	140	D140G	gAc	gGc	3	3	B.1.36.8	0.003
ORF1ab/nsp12	140	D140D	gaC	gaT	3	3	B.1.465	0.011407
ORF1ab/nsp12	140	D140D	gaC	gaT	3	3	B.1.470	0.004213
ORF1ab/nsp12	140	D140Y	Gac	Tac	3	3	B.1.526	0.000071
ORF1ab/nsp12	140	D140D	gaC	gaT	3	3	B.1.560	0.013889
ORF1ab/nsp12	140	D140D	gaC	gaT	3	3	B.1.571	0.029126
ORF1ab/nsp12	140	D140G	gAC	gGT	3	3	P.1	0.000047
ORF1ab/nsp12	140	D140Y	Gac	Tac	3	3	P.2	0.00056
ORF1ab/nsp12	140	D140D	gaC	gaT	3	3	Q.4	0.001364
ORF1ab/nsp12	140	D140E	gaC	gaA	2	2		0.111111
ORF1ab/nsp12	140	D140Y	GaC	TaT	1	2		0.055556
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	2		0.055556
ORF1ab/nsp12	140	D140V	gAC	gTT	1	2		0.055556
ORF1ab/nsp12	140	D140V	gAc	gTc	1	2		0.055556
ORF1ab/nsp12	140	D140N	Gac	Aac	2	2	A	0.000774
ORF1ab/nsp12	140	D140G	gAc	gGc	2	2	AD.2	0.000438
ORF1ab/nsp12	140	D140del1	gaC	ga-	1	2	All	0
ORF1ab/nsp12	140	D140del1	Gac	-ac	1	2	All	0
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	AY.111	0.000366
ORF1ab/nsp12	140	D140Y	Gac	Tac	2	2	AY.116	0.000574
ORF1ab/nsp12	140	D140Y	Gac	Tac	2	2	AY.117	0.000169
ORF1ab/nsp12	140	D140Y	Gac	Tac	2	2	AY.118	0.000125
ORF1ab/nsp12	140	D140Y	Gac	Tac	2	2	AY.14	0.000176
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	AY.27	0.000129
ORF1ab/nsp12	140	D140N	Gac	Aac	2	2	AY.29	0.000032
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	AY.35	0.000466
ORF1ab/nsp12	140	D140H	Gac	Cac	2	2	AY.4	0.000003
ORF1ab/nsp12	140	D140G	gAc	gGc	2	2	AY.4.2	0.000043
ORF1ab/nsp12	140	D140Y	Gac	Tac	2	2	AY.4.4	0.000818
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	AY.4.5	0.000215
ORF1ab/nsp12	140	D140G	gAc	gGc	2	2	AY.44	0.000012
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	AY.5.3	0.000675
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	AY.51	0.001818
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	AY.52	0.001629
ORF1ab/nsp12	140	D140Y	Gac	Tac	2	2	AY.67	0.000929
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	AY.7.1	0.000225
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	AY.71	0.00095
ORF1ab/nsp12	140	D140Y	Gac	Tac	2	2	AY.75	0.000112
ORF1ab/nsp12	140	D140Y	Gac	Tac	2	2	AY.75.1	0.000361
ORF1ab/nsp12	140	D140Y	Gac	Tac	2	2	AY.9.1	0.000167
ORF1ab/nsp12	140	D140E	gaC	gaA	2	2	AY.9.2	0.000073
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	AY.92	0.000575
ORF1ab/nsp12	140	D140Y	Gac	Tac	2	2	AY.92	0.000575
ORF1ab/nsp12	140	D140E	gaC	gaA	1	2	B.1	0.000009
ORF1ab/nsp12	140	D140E	gaC	gaG	1	2	B.1	0.000009
ORF1ab/nsp12	140	D140H	Gac	Cac	2	2	B.1.1	0.000036
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.1.10	0.00223
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.1.161	0.007067
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.1.220	0.003717
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.1.25	0.001137
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.1.284	0.000215
ORF1ab/nsp12	140	D140Y	Gac	Tac	2	2	B.1.1.294	0.002532
ORF1ab/nsp12	140	D140Y	Gac	Tac	2	2	B.1.1.312	0.003824
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.1.318	0.000604
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.1.39	0.001019
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.1.397	0.004505
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.1.507	0.017391
ORF1ab/nsp12	140	D140Y	Gac	Tac	2	2	B.1.1.516	0.133333
ORF1ab/nsp12	140	D140del	GAC	---	2	2	B.1.1.7	0.000002
ORF1ab/nsp12	140	D140V	gAC	gTT	1	2	B.1.1.7	0.000001
ORF1ab/nsp12	140	D140V	gAC	gTA	1	2	B.1.1.7	0.000001
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.1.70	0.000682
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.160.32	0.008584
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.177.16	0.001329
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.177.46	0.001837
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.177.53	0.004785
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.177.73	0.001133
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.177.76	0.004988
ORF1ab/nsp12	140	D140del2	gAC	g--	2	2	B.1.2	0.000018
ORF1ab/nsp12	140	D140H	Gac	Cac	2	2	B.1.2	0.000018
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.213	0.029851
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.214.2	0.001199
ORF1ab/nsp12	140	D140Y	Gac	Tac	2	2	B.1.221	0.000142
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.320	0.002491
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.324	0.00321
ORF1ab/nsp12	140	D140H	Gac	Cac	2	2	B.1.351	0.000059
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.36.18	0.00084
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.369	0.00057
ORF1ab/nsp12	140	D140Y	Gac	Tac	2	2	B.1.396	0.001411
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.399	0.003868
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.428	0.002041
ORF1ab/nsp12	140	D140A	gAc	gCc	2	2	B.1.429	0.000047
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.538	0.016129
ORF1ab/nsp12	140	D140A	gAc	gCc	2	2	B.1.596	0.000174
ORF1ab/nsp12	140	D140E	gaC	gaA	1	2	B.1.617.2	0.000004
ORF1ab/nsp12	140	D140E	gaC	gaG	1	2	B.1.617.2	0.000004
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.1.627	0.00404
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	B.40	0.000729
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	C.36	0.001821
ORF1ab/nsp12	140	D140Y	Gac	Tac	2	2	N.9	0.011905
ORF1ab/nsp12	140	D140A	gAC	gCT	2	2	P.1	0.000032
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	P.4	0.007605
ORF1ab/nsp12	140	D140D	gaC	gaT	2	2	Q.3	0.00029
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1		0.055556
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	A.2.2	0.001689
ORF1ab/nsp12	140	D140E	gaC	gaA	1	1	A.2.5	0.000499
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	A.21	0.00277
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AA.3	0.027027
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AA.4	0.009091
ORF1ab/nsp12	140	D140K	GaC	AaG	1	1	All	0
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	AU.3	0.00211
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	AY.10	0.00053
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AY.100	0.000046
ORF1ab/nsp12	140	D140N	Gac	Aac	1	1	AY.102	0.000027
ORF1ab/nsp12	140	D140G	gAc	gGc	1	1	AY.103	0.000006
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AY.104	0.001984
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AY.105	0.000643
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	AY.106	0.000335
ORF1ab/nsp12	140	D140N	Gac	Aac	1	1	AY.106	0.000335
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	AY.108	0.001103
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AY.110	0.000113
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	AY.116	0.000287
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	AY.12	0.000316
ORF1ab/nsp12	140	D140del	GAC	---	1	1	AY.120	0.000037
ORF1ab/nsp12	140	D140G	gAc	gGc	1	1	AY.120	0.000037
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AY.120.1	0.000321
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	AY.120.1	0.000321
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AY.120.2	0.001285
ORF1ab/nsp12	140	D140A	gAc	gCc	1	1	AY.13	0.000161
ORF1ab/nsp12	140	D140V	gAc	gTc	1	1	AY.20	0.000039
ORF1ab/nsp12	140	D140A	gAc	gCc	1	1	AY.20	0.000039
ORF1ab/nsp12	140	D140G	gAc	gGc	1	1	AY.23	0.00007
ORF1ab/nsp12	140	D140A	gAc	gCc	1	1	AY.23	0.00007
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	AY.23.1	0.000417
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	AY.24	0.000431
ORF1ab/nsp12	140	D140del	GAC	---	1	1	AY.25	0.000006
ORF1ab/nsp12	140	D140N	Gac	Aac	1	1	AY.25	0.000006
ORF1ab/nsp12	140	D140G	gAc	gGc	1	1	AY.25	0.000006
ORF1ab/nsp12	140	D140del2	gAC	g--	1	1	AY.25	0.000006
ORF1ab/nsp12	140	D140del	GAC	---	1	1	AY.3	0.00001
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AY.3.1	0.000085
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AY.32	0.000532
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	AY.32	0.000532
ORF1ab/nsp12	140	D140A	gAc	gCc	1	1	AY.33	0.000067
ORF1ab/nsp12	140	D140E	gaC	gaA	1	1	AY.33	0.000067
ORF1ab/nsp12	140	D140G	gAc	gGc	1	1	AY.33	0.000067
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AY.38	0.000499
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	AY.38	0.000499
ORF1ab/nsp12	140	D140E	gaC	gaA	1	1	AY.4	0.000002
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AY.4.3	0.000842
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AY.40	0.000964
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AY.41	0.000294
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AY.42	0.00004
ORF1ab/nsp12	140	D140H	Gac	Cac	1	1	AY.43	0.000004
ORF1ab/nsp12	140	D140K	GaC	AaG	1	1	AY.44	0.000006
ORF1ab/nsp12	140	D140A	gAc	gCc	1	1	AY.44	0.000006
ORF1ab/nsp12	140	D140del2	gAC	g--	1	1	AY.45	0.000122
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	AY.46.1	0.001027
ORF1ab/nsp12	140	D140N	Gac	Aac	1	1	AY.46.4	0.000165
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	AY.46.5	0.000198
ORF1ab/nsp12	140	D140N	Gac	Aac	1	1	AY.46.5	0.000198
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AY.46.6	0.000072
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	AY.49	0.003195
ORF1ab/nsp12	140	D140A	gAc	gCc	1	1	AY.5	0.000021
ORF1ab/nsp12	140	D140G	gAc	gGc	1	1	AY.5.4	0.000277
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AY.51	0.000909
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	AY.55	0.000917
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	AY.59	0.00053
ORF1ab/nsp12	140	D140G	gAc	gGc	1	1	AY.6	0.000041
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AY.61	0.000105
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AY.62	0.000436
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	AY.62	0.000436
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	AY.63	0.000387
ORF1ab/nsp12	140	D140N	Gac	Aac	1	1	AY.63	0.000387
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AY.63	0.000387
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AY.64	0.000595
ORF1ab/nsp12	140	D140N	Gac	Aac	1	1	AY.65	0.000533
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AY.65	0.000533
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AY.66	0.00107
ORF1ab/nsp12	140	D140del	GAC	---	1	1	AY.67	0.000464
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	AY.68	0.000274
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	AY.69	0.000187
ORF1ab/nsp12	140	D140E	gaC	gaA	1	1	AY.7.1	0.000113
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AY.7.2	0.000559
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	AY.70	0.000209
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	AY.83	0.001724
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	AY.89	0.004902
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	AY.9	0.000068
ORF1ab/nsp12	140	D140G	gAc	gGc	1	1	AY.98.1	0.000048
ORF1ab/nsp12	140	D140N	Gac	Aac	1	1	AY.99	0.001049
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B	0.000128
ORF1ab/nsp12	140	D140G	gAc	gGc	1	1	B.1	0.000009
ORF1ab/nsp12	140	D140A	gAc	gCc	1	1	B.1	0.000009
ORF1ab/nsp12	140	D140E	gaC	gaA	1	1	B.1.1	0.000018
ORF1ab/nsp12	140	D140del	GAC	---	1	1	B.1.1.1	0.000327
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.1.1	0.000327
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.1.1	0.000327
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.1.10	0.001115
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.1.117	0.009709
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.1.138	0.006061
ORF1ab/nsp12	140	D140del	GAC	---	1	1	B.1.1.139	0.022727
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.1.153	0.001095
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.1.157	0.000913
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.1.170	0.001247
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.1.174	0.003378
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.1.176	0.000439
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.1.176	0.000439
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.1.198	0.001468
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.1.214	0.000055
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.1.218	0.007692
ORF1ab/nsp12	140	D140G	gAc	gGc	1	1	B.1.1.222	0.000204
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.1.228	0.003049
ORF1ab/nsp12	140	D140del	GAC	---	1	1	B.1.1.236	0.006897
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.1.269	0.001353
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.1.270	0.010309
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.1.277	0.000759
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.1.28	0.000311
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.1.300	0.010753
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.1.306	0.000438
ORF1ab/nsp12	140	D140V	gAc	gTc	1	1	B.1.1.318	0.000302
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.1.328	0.016949
ORF1ab/nsp12	140	D140G	gAc	gGc	1	1	B.1.1.33	0.000421
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.1.335	0.012987
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.1.344	0.010753
ORF1ab/nsp12	140	D140del	GAC	---	1	1	B.1.1.348	0.000796
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.1.39	0.00051
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.1.402	0.011111
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.1.413	0.006897
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.1.416	0.000905
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.1.421	0.030303
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.1.421	0.030303
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.1.426	0.035714
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.1.434	0.000349
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.1.448	0.002033
ORF1ab/nsp12	140	D140H	Gac	Cac	1	1	B.1.1.7	0.000001
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.1.93	0.025641
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.1.99	0.02381
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.104	0.00369
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.111	0.001175
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.139	0.000733
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.157	0.002985
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.160.26	0.002421
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.160.30	0.002976
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.160.9	0.007194
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.170	0.00431
ORF1ab/nsp12	140	D140A	gAc	gCc	1	1	B.1.177	0.000013
ORF1ab/nsp12	140	D140E	gaC	gaA	1	1	B.1.177	0.000013
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.177.12	0.000152
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.177.15	0.000631
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.177.17	0.000821
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.177.32	0.00135
ORF1ab/nsp12	140	D140G	gAc	gGc	1	1	B.1.177.44	0.000519
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.177.44	0.000519
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.177.45	0.000381
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.177.46	0.000918
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.177.50	0.004695
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.177.56	0.000668
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.177.62	0.001192
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.177.7	0.000165
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.177.75	0.001041
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.177.75	0.001041
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.177.82	0.000477
ORF1ab/nsp12	140	D140G	gAC	gGT	1	1	B.1.177.86	0.000183
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.188	0.016667
ORF1ab/nsp12	140	D140V	gAC	gTG	1	1	B.1.2	0.000009
ORF1ab/nsp12	140	D140A	gAc	gCc	1	1	B.1.201	0.005682
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.214	0.003663
ORF1ab/nsp12	140	D140H	Gac	Cac	1	1	B.1.221	0.000071
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.232	0.000537
ORF1ab/nsp12	140	D140V	gAc	gTc	1	1	B.1.234	0.000132
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.241	0.000812
ORF1ab/nsp12	140	D140N	Gac	Aac	1	1	B.1.243	0.00007
ORF1ab/nsp12	140	D140G	gAc	gGc	1	1	B.1.243	0.00007
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.258	0.000067
ORF1ab/nsp12	140	D140N	Gac	Aac	1	1	B.1.258	0.000067
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.258.17	0.000104
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.258.21	0.007752
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.265	0.001271
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.336	0.002439
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.346	0.001311
ORF1ab/nsp12	140	D140A	gAc	gCc	1	1	B.1.351	0.00003
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.351.2	0.000303
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.351.2	0.000303
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.351.5	0.0006
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.36	0.000146
ORF1ab/nsp12	140	D140A	gAc	gCc	1	1	B.1.36	0.000146
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.36.1	0.00114
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.36.1	0.00114
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.36.17	0.000494
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.36.22	0.001208
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.36.27	0.000763
ORF1ab/nsp12	140	D140del1	gaC	ga-	1	1	B.1.36.29	0.000517
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.36.31	0.001751
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.36.9	0.003215
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.366	0.004878
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.367	0.000792
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.391	0.001127
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.398	0.002976
ORF1ab/nsp12	140	D140G	gAc	gGc	1	1	B.1.400	0.000429
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.415	0.014286
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.416.1	0.001563
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.428	0.00102
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.436	0.001029
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.459	0.004082
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.474	0.001901
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.1.509	0.000866
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.524	0.001406
ORF1ab/nsp12	140	D140G	gAc	gGc	1	1	B.1.526	0.000024
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.544	0.006024
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.550	0.013699
ORF1ab/nsp12	140	D140G	gAc	gGc	1	1	B.1.551	0.00129
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.561	0.000397
ORF1ab/nsp12	140	D140del1	Gac	-ac	1	1	B.1.577	0.000687
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.587	0.001898
ORF1ab/nsp12	140	D140N	Gac	Aac	1	1	B.1.596	0.000087
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.596.1	0.009346
ORF1ab/nsp12	140	D140A	gAc	gCc	1	1	B.1.617.2	0.000004
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.628	0.000352
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.632	0.006711
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.634	0.003425
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.636	0.006711
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.1.93	0.000934
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.12	0.00641
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.23	0.002924
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.29	0.003509
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	B.3	0.000831
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.3	0.000831
ORF1ab/nsp12	140	D140del	GAC	---	1	1	B.34	0.013699
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.4	0.002208
ORF1ab/nsp12	140	D140G	gAc	gGc	1	1	B.6	0.00091
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.6	0.00091
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	B.6.6	0.000889
ORF1ab/nsp12	140	D140A	gAc	gCc	1	1	C.1.2	0.004255
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	C.16	0.00106
ORF1ab/nsp12	140	D140E	gaC	gaA	1	1	C.23	0.005814
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	C.35	0.000774
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	C.35	0.000774
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	C.36.3	0.000567
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	C.36.3.1	0.002717
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	C.37	0.000116
ORF1ab/nsp12	140	D140N	Gac	Aac	1	1	C.37	0.000116
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	C.38	0.008065
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	C.39	0.018868
ORF1ab/nsp12	140	D140H	Gac	Cac	1	1	D.2	0.000075
ORF1ab/nsp12	140	D140del2	gAC	g--	1	1	D.2	0.000075
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	D.2	0.000075
ORF1ab/nsp12	140	D140H	Gac	Cac	1	1	D.3	0.005917
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	N.3	0.005814
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	N.5	0.001767
ORF1ab/nsp12	140	D140V	gAC	gTT	1	1	P.1	0.000016
ORF1ab/nsp12	140	D140G	gAC	gGT	1	1	P.1.10	0.000269
ORF1ab/nsp12	140	D140del	GAC	---	1	1	Q.1	0.000126
ORF1ab/nsp12	140	D140Y	Gac	Tac	1	1	Q.3	0.000145
ORF1ab/nsp12	140	D140D	gaC	gaT	1	1	W.1	0.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.