CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 14 | V14V | V4406V | syn | gtA | gtG | 29647 | 29635 | 0.999595 | 13480-13482 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 29635 | 29647 | All | 0.005668 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 25108 | 25108 | AY.39.1 | 0.994613 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 2446 | 2446 | AY.30 | 0.967946 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1370 | 1370 | AY.39.1.1 | 0.992754 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 170 | 171 | B.1.617.2 | 0.00064 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 112 | 112 | B.1.1.7 | 0.0001 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 76 | 77 | AY.4 | 0.000118 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 40 | 40 | AY.39 | 0.000988 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 33 | 35 | B.1 | 0.000302 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 29 | 29 | AU.2 | 0.070218 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 15 | 15 | AY.87 | 0.01249 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 14 | 14 | AY.25 | 0.000084 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 14 | 14 | B.1.2 | 0.000123 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 12 | 12 | AY.44 | 0.000073 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 10 | 11 | AY.43 | 0.000044 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 9 | 10 | AY.92 | 0.002585 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 7 | 9 | B.1.221 | 0.000497 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 8 | 8 | P.1.6 | 0.015564 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 7 | 7 | AY.62 | 0.00305 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 5 | 5 | AY.67 | 0.002321 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 5 | 5 | B.1.298 | 0.010571 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 5 | 5 | B.1.575 | 0.001517 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 5 | 5 | C.36 | 0.004554 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 4 | 4 | AY.101 | 0.001962 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 4 | 4 | AY.85 | 0.001709 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 3 | 3 | AY.46.1 | 0.00308 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 3 | 3 | B | 0.000383 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 2 | 2 | AY.80 | 0.002257 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | B.1.177.2 | 0.004545 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | B.1.341 | 0.022727 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp12 | 14 | V14V | gtA | gtG | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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