CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 14

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1214V14VV4406VsyngtAgtG29647296350.99959513480-13482
ORF1ab/nsp1214V14VV4406VsyngtAgtT2964790.00030357213480-13482
ORF1ab/nsp1214V14VV4406VsyngtAgtC2964730.00010119113480-13482
ORF1ab/nsp1214V14delV4406deldelGTA---7474113480-13482
ORF1ab/nsp1214V14AV4406AnonsyngTagCa99113480-13482
ORF1ab/nsp1214V14GV4406GnonsyngTagGa950.55555613480-13482
ORF1ab/nsp1214V14GV4406GnonsyngTAgGT940.44444413480-13482
ORF1ab/nsp1214V14MV4406MnonsynGtAAtG77113480-13482
ORF1ab/nsp1214V14LV4406LnonsynGtaTta760.85714313480-13482
ORF1ab/nsp1214V14LV4406LnonsynGtaCta710.14285713480-13482
ORF1ab/nsp1214V14del2V4406del2delGTAA--320.66666713480-13482
ORF1ab/nsp1214V14del2V4406del2delGTa--a310.33333313480-13482
ORF1ab/nsp1214V14FV4406FnonsynGtATtT22113480-13482
ORF1ab/nsp1214V14CV4406CnonsynGTATGT22113480-13482
ORF1ab/nsp1214V14XV4406XnonsynGTaTGa22113480-13482
ORF1ab/nsp1214V14del1V4406del1delgtAgt-210.513480-13482
ORF1ab/nsp1214V14del1V4406del1delGta-ta210.513480-13482
ORF1ab/nsp1214V14EV4406EnonsyngTagAa11113480-13482
ORF1ab/nsp1214V14IV4406InonsynGtaAta11113480-13482
ORF1ab/nsp1214V14RV4406RnonsynGTaCGa11113480-13482

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1214V14VgtAgtG2963529647All0.005668
ORF1ab/nsp1214V14VgtAgtT929647All0.000002
ORF1ab/nsp1214V14VgtAgtC329647All0.000001
ORF1ab/nsp1214V14VgtAgtG2510825108AY.39.10.994613
ORF1ab/nsp1214V14VgtAgtG24462446AY.300.967946
ORF1ab/nsp1214V14VgtAgtG13701370AY.39.1.10.992754
ORF1ab/nsp1214V14VgtAgtG170171B.1.617.20.00064
ORF1ab/nsp1214V14VgtAgtC1171B.1.617.20.000004
ORF1ab/nsp1214V14VgtAgtG112112B.1.1.70.0001
ORF1ab/nsp1214V14VgtAgtG7677AY.40.000118
ORF1ab/nsp1214V14VgtAgtT177AY.40.000002
ORF1ab/nsp1214V14delGTA---7474All0.000014
ORF1ab/nsp1214V14VgtAgtG4040AY.390.000988
ORF1ab/nsp1214V14VgtAgtG3335B.10.000302
ORF1ab/nsp1214V14VgtAgtT235B.10.000018
ORF1ab/nsp1214V14VgtAgtG2929AU.20.070218
ORF1ab/nsp1214V14delGTA---2323B.1.1.70.000021
ORF1ab/nsp1214V14VgtAgtG1515AY.870.01249
ORF1ab/nsp1214V14VgtAgtG1414AY.250.000084
ORF1ab/nsp1214V14VgtAgtG1414B.1.20.000123
ORF1ab/nsp1214V14VgtAgtG1212AY.440.000073
ORF1ab/nsp1214V14VgtAgtG1011AY.430.000044
ORF1ab/nsp1214V14VgtAgtT111AY.430.000004
ORF1ab/nsp1214V14VgtAgtG910AY.920.002585
ORF1ab/nsp1214V14VgtAgtC110AY.920.000287
ORF1ab/nsp1214V14AgTagCa99All0.000002
ORF1ab/nsp1214V14GgTagGa59All0.000001
ORF1ab/nsp1214V14GgTAgGT49All0.000001
ORF1ab/nsp1214V14VgtAgtG79B.1.2210.000497
ORF1ab/nsp1214V14VgtAgtT29B.1.2210.000142
ORF1ab/nsp1214V14VgtAgtG88P.1.60.015564
ORF1ab/nsp1214V14MGtAAtG77All0.000001
ORF1ab/nsp1214V14LGtaTta67All0.000001
ORF1ab/nsp1214V14LGtaCta17All0
ORF1ab/nsp1214V14VgtAgtG77AY.1030.000043
ORF1ab/nsp1214V14VgtAgtG77AY.620.00305
ORF1ab/nsp1214V14VgtAgtG66B.1.1770.000079
ORF1ab/nsp1214V14VgtAgtG66P.10.000095
ORF1ab/nsp1214V14GgTagGa350.166667
ORF1ab/nsp1214V14GgTAgGT250.111111
ORF1ab/nsp1214V14VgtAgtG55AY.670.002321
ORF1ab/nsp1214V14VgtAgtG55AY.9.20.000184
ORF1ab/nsp1214V14delGTA---55B.10.000046
ORF1ab/nsp1214V14VgtAgtG55B.1.10.000091
ORF1ab/nsp1214V14VgtAgtG55B.1.2980.010571
ORF1ab/nsp1214V14VgtAgtG55B.1.5260.000118
ORF1ab/nsp1214V14VgtAgtG55B.1.5750.001517
ORF1ab/nsp1214V14VgtAgtG55B.1.5960.000436
ORF1ab/nsp1214V14VgtAgtG55C.360.004554
ORF1ab/nsp1214V14VgtAgtG44AY.1010.001962
ORF1ab/nsp1214V14VgtAgtG44AY.30.00004
ORF1ab/nsp1214V14VgtAgtG44AY.850.001709
ORF1ab/nsp1214V14VgtAgtG44AY.99.20.000369
ORF1ab/nsp1214V14delGTA---44B.1.20.000035
ORF1ab/nsp1214V14GgTagGa24B.1.2210.000142
ORF1ab/nsp1214V14GgTAgGT24B.1.2210.000142
ORF1ab/nsp1214V14del2GTAA--23All0
ORF1ab/nsp1214V14del2GTa--a13All0
ORF1ab/nsp1214V14VgtAgtG33AY.1170.000254
ORF1ab/nsp1214V14VgtAgtG33AY.160.001139
ORF1ab/nsp1214V14VgtAgtG33AY.260.000085
ORF1ab/nsp1214V14delGTA---33AY.430.000013
ORF1ab/nsp1214V14VgtAgtG33AY.46.10.00308
ORF1ab/nsp1214V14VgtAgtG33B0.000383
ORF1ab/nsp1214V14AgTagCa33B.10.000027
ORF1ab/nsp1214V14delGTA---33B.1.10.000054
ORF1ab/nsp1214V14VgtAgtT220.111111
ORF1ab/nsp1214V14CGTATGT22All0
ORF1ab/nsp1214V14XGTaTGa22All0
ORF1ab/nsp1214V14FGtATtT22All0
ORF1ab/nsp1214V14del1gtAgt-12All0
ORF1ab/nsp1214V14del1Gta-ta12All0
ORF1ab/nsp1214V14VgtAgtG22AY.1200.000074
ORF1ab/nsp1214V14AgTagCa22AY.230.000139
ORF1ab/nsp1214V14delGTA---22AY.250.000012
ORF1ab/nsp1214V14VgtAgtG22AY.4.50.000215
ORF1ab/nsp1214V14VgtAgtG22AY.450.000243
ORF1ab/nsp1214V14VgtAgtG22AY.75.10.000361
ORF1ab/nsp1214V14VgtAgtG22AY.800.002257
ORF1ab/nsp1214V14delGTA---22AY.990.002099
ORF1ab/nsp1214V14delGTA---22B.1.1.10.000653
ORF1ab/nsp1214V14delGTA---22B.1.1770.000026
ORF1ab/nsp1214V14delGTA---22B.1.177.600.000437
ORF1ab/nsp1214V14LGtaTta22B.1.2210.000142
ORF1ab/nsp1214V14FGtATtT22B.1.2210.000142
ORF1ab/nsp1214V14CGTATGT22B.1.2210.000142
ORF1ab/nsp1214V14XGTaTGa22B.1.2210.000142
ORF1ab/nsp1214V14VgtAgtG22B.1.2390.002442
ORF1ab/nsp1214V14VgtAgtG22B.1.2580.000133
ORF1ab/nsp1214V14VgtAgtG22B.1.258.170.000208
ORF1ab/nsp1214V14VgtAgtG22B.1.360.000292
ORF1ab/nsp1214V14VgtAgtG22B.1.36.80.002
ORF1ab/nsp1214V14delGTA---22B.1.617.20.000008
ORF1ab/nsp1214V14delGTA---22P.10.000032
ORF1ab/nsp1214V14VgtAgtG22P.1.140.000096
ORF1ab/nsp1214V14VgtAgtG11A.2.50.000499
ORF1ab/nsp1214V14RGTaCGa11All0
ORF1ab/nsp1214V14IGtaAta11All0
ORF1ab/nsp1214V14EgTagAa11All0
ORF1ab/nsp1214V14delGTA---11AY.1010.00049
ORF1ab/nsp1214V14VgtAgtG11AY.1020.000027
ORF1ab/nsp1214V14delGTA---11AY.1030.000006
ORF1ab/nsp1214V14VgtAgtG11AY.1110.000183
ORF1ab/nsp1214V14VgtAgtG11AY.1160.000287
ORF1ab/nsp1214V14delGTA---11AY.1190.000035
ORF1ab/nsp1214V14VgtAgtG11AY.120.10.000321
ORF1ab/nsp1214V14VgtAgtG11AY.140.000088
ORF1ab/nsp1214V14delGTA---11AY.230.00007
ORF1ab/nsp1214V14delGTA---11AY.260.000028
ORF1ab/nsp1214V14VgtAgtG11AY.360.000148
ORF1ab/nsp1214V14LGtaTta11AY.40.000002
ORF1ab/nsp1214V14delGTA---11AY.40.000002
ORF1ab/nsp1214V14VgtAgtG11AY.400.000964
ORF1ab/nsp1214V14VgtAgtG11AY.420.00004
ORF1ab/nsp1214V14AgTagCa11AY.430.000004
ORF1ab/nsp1214V14MGtAAtG11AY.440.000006
ORF1ab/nsp1214V14VgtAgtG11AY.46.20.000635
ORF1ab/nsp1214V14VgtAgtG11AY.470.000031
ORF1ab/nsp1214V14EgTagAa11AY.470.000031
ORF1ab/nsp1214V14VgtAgtG11AY.540.000095
ORF1ab/nsp1214V14LGtaTta11AY.550.000917
ORF1ab/nsp1214V14VgtAgtG11AY.580.000907
ORF1ab/nsp1214V14VgtAgtG11AY.60.000041
ORF1ab/nsp1214V14VgtAgtG11AY.610.000105
ORF1ab/nsp1214V14LGtaTta11AY.690.000187
ORF1ab/nsp1214V14delGTA---11AY.720.001361
ORF1ab/nsp1214V14delGTA---11AY.750.000056
ORF1ab/nsp1214V14delGTA---11AY.75.10.00018
ORF1ab/nsp1214V14IGtaAta11AY.790.001211
ORF1ab/nsp1214V14MGtAAtG11AY.9.20.000037
ORF1ab/nsp1214V14VgtAgtG11AY.900.000684
ORF1ab/nsp1214V14VgtAgtG11AY.950.000761
ORF1ab/nsp1214V14VgtAgtG11AY.960.002075
ORF1ab/nsp1214V14VgtAgtG11AY.98.10.000048
ORF1ab/nsp1214V14delGTA---11AY.99.20.000092
ORF1ab/nsp1214V14del2GTAA--11B.10.000009
ORF1ab/nsp1214V14MGtAAtG11B.1.10.000018
ORF1ab/nsp1214V14VgtAgtG11B.1.1.1700.001247
ORF1ab/nsp1214V14VgtAgtG11B.1.1.2840.000107
ORF1ab/nsp1214V14delGTA---11B.1.1.3110.000358
ORF1ab/nsp1214V14VgtAgtG11B.1.1.3160.000925
ORF1ab/nsp1214V14delGTA---11B.1.1.3480.000796
ORF1ab/nsp1214V14VgtAgtG11B.1.1.500.000679
ORF1ab/nsp1214V14VgtAgtG11B.1.1.5190.00004
ORF1ab/nsp1214V14AgTagCa11B.1.1.70.000001
ORF1ab/nsp1214V14RGTaCGa11B.1.1.70.000001
ORF1ab/nsp1214V14MGtAAtG11B.1.1.70.000001
ORF1ab/nsp1214V14VgtAgtG11B.1.1.700.000341
ORF1ab/nsp1214V14delGTA---11B.1.1.700.000341
ORF1ab/nsp1214V14VgtAgtG11B.1.1460.004237
ORF1ab/nsp1214V14VgtAgtG11B.1.1570.002985
ORF1ab/nsp1214V14VgtAgtG11B.1.1600.000031
ORF1ab/nsp1214V14delGTA---11B.1.1600.000031
ORF1ab/nsp1214V14delGTA---11B.1.1610.017241
ORF1ab/nsp1214V14AgTagCa11B.1.1770.000013
ORF1ab/nsp1214V14del1Gta-ta11B.1.177.120.000152
ORF1ab/nsp1214V14VgtAgtG11B.1.177.20.004545
ORF1ab/nsp1214V14VgtAgtG11B.1.177.200.001517
ORF1ab/nsp1214V14delGTA---11B.1.177.210.000076
ORF1ab/nsp1214V14VgtAgtG11B.1.177.350.000691
ORF1ab/nsp1214V14del2GTAA--11B.1.177.450.000381
ORF1ab/nsp1214V14VgtAgtG11B.1.177.530.002392
ORF1ab/nsp1214V14MGtAAtG11B.1.177.730.000566
ORF1ab/nsp1214V14delGTA---11B.1.2220.001692
ORF1ab/nsp1214V14VgtAgtG11B.1.2400.000216
ORF1ab/nsp1214V14del2GTa--a11B.1.2580.000067
ORF1ab/nsp1214V14delGTA---11B.1.258.100.011364
ORF1ab/nsp1214V14VgtAgtT11B.1.3330.010526
ORF1ab/nsp1214V14VgtAgtG11B.1.3410.022727
ORF1ab/nsp1214V14VgtAgtG11B.1.3510.00003
ORF1ab/nsp1214V14MGtAAtG11B.1.360.000146
ORF1ab/nsp1214V14delGTA---11B.1.4150.014286
ORF1ab/nsp1214V14LGtaTta11B.1.4260.001009
ORF1ab/nsp1214V14delGTA---11B.1.4270.00005
ORF1ab/nsp1214V14VgtAgtG11B.1.4290.000024
ORF1ab/nsp1214V14MGtAAtG11B.1.4560.003268
ORF1ab/nsp1214V14VgtAgtG11B.1.4680.005714
ORF1ab/nsp1214V14AgTagCa11B.1.5150.014493
ORF1ab/nsp1214V14VgtAgtG11B.1.5650.00081
ORF1ab/nsp1214V14VgtAgtG11B.1.5800.004065
ORF1ab/nsp1214V14del1gtAgt-11B.1.6090.000479
ORF1ab/nsp1214V14LGtaCta11B.1.6370.000073
ORF1ab/nsp1214V14VgtAgtG11B.1.930.000934
ORF1ab/nsp1214V14VgtAgtG11C.370.000116
ORF1ab/nsp1214V14VgtAgtC11P.1.10.000318
ORF1ab/nsp1214V14delGTA---11P.1.150.000232
ORF1ab/nsp1214V14VgtAgtG11P.1.40.000977
ORF1ab/nsp1214V14delGTA---11P.20.000187
ORF1ab/nsp1214V14VgtAgtG11Q.10.000126