CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 14

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1214V14VV4406VsyngtAgtG29647296350.99959513480-13482
ORF1ab/nsp1214V14VV4406VsyngtAgtT2964790.00030357213480-13482
ORF1ab/nsp1214V14VV4406VsyngtAgtC2964730.00010119113480-13482
ORF1ab/nsp1214V14delV4406deldelGTA---7474113480-13482
ORF1ab/nsp1214V14AV4406AnonsyngTagCa99113480-13482
ORF1ab/nsp1214V14GV4406GnonsyngTagGa950.55555613480-13482
ORF1ab/nsp1214V14GV4406GnonsyngTAgGT940.44444413480-13482
ORF1ab/nsp1214V14MV4406MnonsynGtAAtG77113480-13482
ORF1ab/nsp1214V14LV4406LnonsynGtaTta760.85714313480-13482
ORF1ab/nsp1214V14LV4406LnonsynGtaCta710.14285713480-13482
ORF1ab/nsp1214V14del2V4406del2delGTAA--320.66666713480-13482
ORF1ab/nsp1214V14del2V4406del2delGTa--a310.33333313480-13482
ORF1ab/nsp1214V14FV4406FnonsynGtATtT22113480-13482
ORF1ab/nsp1214V14CV4406CnonsynGTATGT22113480-13482
ORF1ab/nsp1214V14XV4406XnonsynGTaTGa22113480-13482
ORF1ab/nsp1214V14del1V4406del1delgtAgt-210.513480-13482
ORF1ab/nsp1214V14del1V4406del1delGta-ta210.513480-13482
ORF1ab/nsp1214V14EV4406EnonsyngTagAa11113480-13482
ORF1ab/nsp1214V14IV4406InonsynGtaAta11113480-13482
ORF1ab/nsp1214V14RV4406RnonsynGTaCGa11113480-13482

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1214V14VgtAgtG2963529647All0.005668
ORF1ab/nsp1214V14VgtAgtT929647All0.000002
ORF1ab/nsp1214V14VgtAgtC329647All0.000001
ORF1ab/nsp1214V14VgtAgtG2510825108AY.39.10.994613
ORF1ab/nsp1214V14VgtAgtG24462446AY.300.967946
ORF1ab/nsp1214V14VgtAgtG13701370AY.39.1.10.992754
ORF1ab/nsp1214V14VgtAgtG170171B.1.617.20.00064
ORF1ab/nsp1214V14VgtAgtC1171B.1.617.20.000004
ORF1ab/nsp1214V14VgtAgtG112112B.1.1.70.0001
ORF1ab/nsp1214V14VgtAgtG7677AY.40.000118
ORF1ab/nsp1214V14VgtAgtT177AY.40.000002
ORF1ab/nsp1214V14delGTA---7474All0.000014
ORF1ab/nsp1214V14VgtAgtG4040AY.390.000988
ORF1ab/nsp1214V14VgtAgtG3335B.10.000302
ORF1ab/nsp1214V14VgtAgtT235B.10.000018
ORF1ab/nsp1214V14VgtAgtG2929AU.20.070218
ORF1ab/nsp1214V14delGTA---2323B.1.1.70.000021
ORF1ab/nsp1214V14VgtAgtG1515AY.870.01249
ORF1ab/nsp1214V14VgtAgtG1414AY.250.000084
ORF1ab/nsp1214V14VgtAgtG1414B.1.20.000123
ORF1ab/nsp1214V14VgtAgtG1212AY.440.000073
ORF1ab/nsp1214V14VgtAgtG1011AY.430.000044
ORF1ab/nsp1214V14VgtAgtT111AY.430.000004
ORF1ab/nsp1214V14VgtAgtG910AY.920.002585
ORF1ab/nsp1214V14VgtAgtC110AY.920.000287
ORF1ab/nsp1214V14AgTagCa99All0.000002
ORF1ab/nsp1214V14GgTagGa59All0.000001
ORF1ab/nsp1214V14GgTAgGT49All0.000001
ORF1ab/nsp1214V14VgtAgtG79B.1.2210.000497
ORF1ab/nsp1214V14VgtAgtT29B.1.2210.000142
ORF1ab/nsp1214V14VgtAgtG88P.1.60.015564
ORF1ab/nsp1214V14MGtAAtG77All0.000001
ORF1ab/nsp1214V14LGtaTta67All0.000001
ORF1ab/nsp1214V14LGtaCta17All0
ORF1ab/nsp1214V14VgtAgtG77AY.1030.000043
ORF1ab/nsp1214V14VgtAgtG77AY.620.00305
ORF1ab/nsp1214V14VgtAgtG66B.1.1770.000079
ORF1ab/nsp1214V14VgtAgtG66P.10.000095
ORF1ab/nsp1214V14GgTagGa350.166667
ORF1ab/nsp1214V14GgTAgGT250.111111
ORF1ab/nsp1214V14VgtAgtG55AY.670.002321
ORF1ab/nsp1214V14VgtAgtG55AY.9.20.000184
ORF1ab/nsp1214V14delGTA---55B.10.000046
ORF1ab/nsp1214V14VgtAgtG55B.1.10.000091
ORF1ab/nsp1214V14VgtAgtG55B.1.2980.010571
ORF1ab/nsp1214V14VgtAgtG55B.1.5260.000118
ORF1ab/nsp1214V14VgtAgtG55B.1.5750.001517
ORF1ab/nsp1214V14VgtAgtG55B.1.5960.000436
ORF1ab/nsp1214V14VgtAgtG55C.360.004554
ORF1ab/nsp1214V14VgtAgtG44AY.1010.001962
ORF1ab/nsp1214V14VgtAgtG44AY.30.00004
ORF1ab/nsp1214V14VgtAgtG44AY.850.001709
ORF1ab/nsp1214V14VgtAgtG44AY.99.20.000369
ORF1ab/nsp1214V14delGTA---44B.1.20.000035
ORF1ab/nsp1214V14GgTagGa24B.1.2210.000142
ORF1ab/nsp1214V14GgTAgGT24B.1.2210.000142
ORF1ab/nsp1214V14del2GTAA--23All0
ORF1ab/nsp1214V14del2GTa--a13All0
ORF1ab/nsp1214V14VgtAgtG33AY.1170.000254
ORF1ab/nsp1214V14VgtAgtG33AY.160.001139
ORF1ab/nsp1214V14VgtAgtG33AY.260.000085
ORF1ab/nsp1214V14delGTA---33AY.430.000013
ORF1ab/nsp1214V14VgtAgtG33AY.46.10.00308
ORF1ab/nsp1214V14VgtAgtG33B0.000383
ORF1ab/nsp1214V14AgTagCa33B.10.000027
ORF1ab/nsp1214V14delGTA---33B.1.10.000054
ORF1ab/nsp1214V14VgtAgtT220.111111
ORF1ab/nsp1214V14CGTATGT22All0
ORF1ab/nsp1214V14XGTaTGa22All0
ORF1ab/nsp1214V14FGtATtT22All0
ORF1ab/nsp1214V14del1gtAgt-12All0
ORF1ab/nsp1214V14del1Gta-ta12All0
ORF1ab/nsp1214V14VgtAgtG22AY.1200.000074
ORF1ab/nsp1214V14AgTagCa22AY.230.000139
ORF1ab/nsp1214V14delGTA---22AY.250.000012
ORF1ab/nsp1214V14VgtAgtG22AY.4.50.000215
ORF1ab/nsp1214V14VgtAgtG22AY.450.000243
ORF1ab/nsp1214V14VgtAgtG22AY.75.10.000361
ORF1ab/nsp1214V14VgtAgtG22AY.800.002257
ORF1ab/nsp1214V14delGTA---22AY.990.002099
ORF1ab/nsp1214V14delGTA---22B.1.1.10.000653
ORF1ab/nsp1214V14delGTA---22B.1.1770.000026
ORF1ab/nsp1214V14delGTA---22B.1.177.600.000437
ORF1ab/nsp1214V14LGtaTta22B.1.2210.000142
ORF1ab/nsp1214V14FGtATtT22B.1.2210.000142
ORF1ab/nsp1214V14CGTATGT22B.1.2210.000142
ORF1ab/nsp1214V14XGTaTGa22B.1.2210.000142
ORF1ab/nsp1214V14VgtAgtG22B.1.2390.002442
ORF1ab/nsp1214V14VgtAgtG22B.1.2580.000133
ORF1ab/nsp1214V14VgtAgtG22B.1.258.170.000208
ORF1ab/nsp1214V14VgtAgtG22B.1.360.000292
ORF1ab/nsp1214V14VgtAgtG22B.1.36.80.002
ORF1ab/nsp1214V14delGTA---22B.1.617.20.000008
ORF1ab/nsp1214V14delGTA---22P.10.000032
ORF1ab/nsp1214V14VgtAgtG22P.1.140.000096
ORF1ab/nsp1214V14VgtAgtG11A.2.50.000499
ORF1ab/nsp1214V14RGTaCGa11All0
ORF1ab/nsp1214V14IGtaAta11All0
ORF1ab/nsp1214V14EgTagAa11All0
ORF1ab/nsp1214V14delGTA---11AY.1010.00049
ORF1ab/nsp1214V14VgtAgtG11AY.1020.000027
ORF1ab/nsp1214V14delGTA---11AY.1030.000006
ORF1ab/nsp1214V14VgtAgtG11AY.1110.000183
ORF1ab/nsp1214V14VgtAgtG11AY.1160.000287
ORF1ab/nsp1214V14delGTA---11AY.1190.000035
ORF1ab/nsp1214V14VgtAgtG11AY.120.10.000321
ORF1ab/nsp1214V14VgtAgtG11AY.140.000088
ORF1ab/nsp1214V14delGTA---11AY.230.00007
ORF1ab/nsp1214V14delGTA---11AY.260.000028
ORF1ab/nsp1214V14VgtAgtG11AY.360.000148
ORF1ab/nsp1214V14LGtaTta11AY.40.000002
ORF1ab/nsp1214V14delGTA---11AY.40.000002
ORF1ab/nsp1214V14VgtAgtG11AY.400.000964
ORF1ab/nsp1214V14VgtAgtG11AY.420.00004
ORF1ab/nsp1214V14AgTagCa11AY.430.000004
ORF1ab/nsp1214V14MGtAAtG11AY.440.000006
ORF1ab/nsp1214V14VgtAgtG11AY.46.20.000635
ORF1ab/nsp1214V14VgtAgtG11AY.470.000031
ORF1ab/nsp1214V14EgTagAa11AY.470.000031
ORF1ab/nsp1214V14VgtAgtG11AY.540.000095
ORF1ab/nsp1214V14LGtaTta11AY.550.000917
ORF1ab/nsp1214V14VgtAgtG11AY.580.000907
ORF1ab/nsp1214V14VgtAgtG11AY.60.000041
ORF1ab/nsp1214V14VgtAgtG11AY.610.000105
ORF1ab/nsp1214V14LGtaTta11AY.690.000187
ORF1ab/nsp1214V14delGTA---11AY.720.001361
ORF1ab/nsp1214V14delGTA---11AY.750.000056
ORF1ab/nsp1214V14delGTA---11AY.75.10.00018
ORF1ab/nsp1214V14IGtaAta11AY.790.001211
ORF1ab/nsp1214V14MGtAAtG11AY.9.20.000037
ORF1ab/nsp1214V14VgtAgtG11AY.900.000684
ORF1ab/nsp1214V14VgtAgtG11AY.950.000761
ORF1ab/nsp1214V14VgtAgtG11AY.960.002075
ORF1ab/nsp1214V14VgtAgtG11AY.98.10.000048
ORF1ab/nsp1214V14delGTA---11AY.99.20.000092
ORF1ab/nsp1214V14del2GTAA--11B.10.000009
ORF1ab/nsp1214V14MGtAAtG11B.1.10.000018
ORF1ab/nsp1214V14VgtAgtG11B.1.1.1700.001247
ORF1ab/nsp1214V14VgtAgtG11B.1.1.2840.000107
ORF1ab/nsp1214V14delGTA---11B.1.1.3110.000358
ORF1ab/nsp1214V14VgtAgtG11B.1.1.3160.000925
ORF1ab/nsp1214V14delGTA---11B.1.1.3480.000796
ORF1ab/nsp1214V14VgtAgtG11B.1.1.500.000679
ORF1ab/nsp1214V14VgtAgtG11B.1.1.5190.00004
ORF1ab/nsp1214V14AgTagCa11B.1.1.70.000001
ORF1ab/nsp1214V14RGTaCGa11B.1.1.70.000001
ORF1ab/nsp1214V14MGtAAtG11B.1.1.70.000001
ORF1ab/nsp1214V14VgtAgtG11B.1.1.700.000341
ORF1ab/nsp1214V14delGTA---11B.1.1.700.000341
ORF1ab/nsp1214V14VgtAgtG11B.1.1460.004237
ORF1ab/nsp1214V14VgtAgtG11B.1.1570.002985
ORF1ab/nsp1214V14VgtAgtG11B.1.1600.000031
ORF1ab/nsp1214V14delGTA---11B.1.1600.000031
ORF1ab/nsp1214V14delGTA---11B.1.1610.017241
ORF1ab/nsp1214V14AgTagCa11B.1.1770.000013
ORF1ab/nsp1214V14del1Gta-ta11B.1.177.120.000152
ORF1ab/nsp1214V14VgtAgtG11B.1.177.20.004545
ORF1ab/nsp1214V14VgtAgtG11B.1.177.200.001517
ORF1ab/nsp1214V14delGTA---11B.1.177.210.000076
ORF1ab/nsp1214V14VgtAgtG11B.1.177.350.000691
ORF1ab/nsp1214V14del2GTAA--11B.1.177.450.000381
ORF1ab/nsp1214V14VgtAgtG11B.1.177.530.002392
ORF1ab/nsp1214V14MGtAAtG11B.1.177.730.000566
ORF1ab/nsp1214V14delGTA---11B.1.2220.001692
ORF1ab/nsp1214V14VgtAgtG11B.1.2400.000216
ORF1ab/nsp1214V14del2GTa--a11B.1.2580.000067
ORF1ab/nsp1214V14delGTA---11B.1.258.100.011364
ORF1ab/nsp1214V14VgtAgtT11B.1.3330.010526
ORF1ab/nsp1214V14VgtAgtG11B.1.3410.022727
ORF1ab/nsp1214V14VgtAgtG11B.1.3510.00003
ORF1ab/nsp1214V14MGtAAtG11B.1.360.000146
ORF1ab/nsp1214V14delGTA---11B.1.4150.014286
ORF1ab/nsp1214V14LGtaTta11B.1.4260.001009
ORF1ab/nsp1214V14delGTA---11B.1.4270.00005
ORF1ab/nsp1214V14VgtAgtG11B.1.4290.000024
ORF1ab/nsp1214V14MGtAAtG11B.1.4560.003268
ORF1ab/nsp1214V14VgtAgtG11B.1.4680.005714
ORF1ab/nsp1214V14AgTagCa11B.1.5150.014493
ORF1ab/nsp1214V14VgtAgtG11B.1.5650.00081
ORF1ab/nsp1214V14VgtAgtG11B.1.5800.004065
ORF1ab/nsp1214V14del1gtAgt-11B.1.6090.000479
ORF1ab/nsp1214V14LGtaCta11B.1.6370.000073
ORF1ab/nsp1214V14VgtAgtG11B.1.930.000934
ORF1ab/nsp1214V14VgtAgtG11C.370.000116
ORF1ab/nsp1214V14VgtAgtC11P.1.10.000318
ORF1ab/nsp1214V14delGTA---11P.1.150.000232
ORF1ab/nsp1214V14VgtAgtG11P.1.40.000977
ORF1ab/nsp1214V14delGTA---11P.20.000187
ORF1ab/nsp1214V14VgtAgtG11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.