CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 115

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12115S115SS4507SsyntcAtcG5785530.95674713783-13785
ORF1ab/nsp12115S115SS4507SsyntcAtcT578200.034602113783-13785
ORF1ab/nsp12115S115SS4507SsyntcAtcC57850.0086505213783-13785
ORF1ab/nsp12115S115AS4507AnonsynTcaGca1171150.98290613783-13785
ORF1ab/nsp12115S115AS4507AnonsynTcAGcT11720.01709413783-13785
ORF1ab/nsp12115S115del1S4507del1deltCat-a5858113783-13785
ORF1ab/nsp12115S115delS4507deldelTCA---2626113783-13785
ORF1ab/nsp12115S115PS4507PnonsynTcaCca18150.83333313783-13785
ORF1ab/nsp12115S115PS4507PnonsynTcACcT1820.11111113783-13785
ORF1ab/nsp12115S115PS4507PnonsynTcACcG1810.055555613783-13785
ORF1ab/nsp12115S115XS4507XnonsyntCatAa1080.813783-13785
ORF1ab/nsp12115S115XS4507XnonsyntCatGa1020.213783-13785
ORF1ab/nsp12115S115LS4507LnonsyntCatTa640.66666713783-13785
ORF1ab/nsp12115S115LS4507LnonsynTCACTT620.33333313783-13785
ORF1ab/nsp12115S115TS4507TnonsynTcaAca33113783-13785
ORF1ab/nsp12115S115RS4507RnonsynTCaCGa11113783-13785
ORF1ab/nsp12115S115FS4507FnonsyntCAtTT11113783-13785
ORF1ab/nsp12115S115IS4507InonsynTCaATa11113783-13785

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12115S115StcAtcG553578All0.000106
ORF1ab/nsp12115S115StcAtcT20578All0.000004
ORF1ab/nsp12115S115StcAtcC5578All0.000001
ORF1ab/nsp12115S115StcAtcG482482B.1.5260.011329
ORF1ab/nsp12115S115ATcaGca115117All0.000022
ORF1ab/nsp12115S115ATcAGcT2117All0
ORF1ab/nsp12115S115del1tCat-a5858All0.000011
ORF1ab/nsp12115S115ATcaGca5252AY.50.001074
ORF1ab/nsp12115S115del1tCat-a4747B.1.1.70.000042
ORF1ab/nsp12115S115delTCA---2626All0.000005
ORF1ab/nsp12115S115ATcaGca2525B.1.1.70.000022
ORF1ab/nsp12115S115PTcaCca1518All0.000003
ORF1ab/nsp12115S115PTcACcT218All0
ORF1ab/nsp12115S115PTcACcG118All0
ORF1ab/nsp12115S115StcAtcT1717C.370.001973
ORF1ab/nsp12115S115ATcaGca1616AE.40.695652
ORF1ab/nsp12115S115XtCatAa810All0.000002
ORF1ab/nsp12115S115XtCatGa210All0
ORF1ab/nsp12115S115StcAtcG1010B.1.1.70.000009
ORF1ab/nsp12115S115StcAtcG1010B.1.1600.000312
ORF1ab/nsp12115S115StcAtcG77AY.440.000043
ORF1ab/nsp12115S115LtCatTa46All0.000001
ORF1ab/nsp12115S115LTCACTT26All0
ORF1ab/nsp12115S115delTCA---66B.1.1.70.000005
ORF1ab/nsp12115S115StcAtcG55AY.1190.000177
ORF1ab/nsp12115S115StcAtcG55AY.4.20.000108
ORF1ab/nsp12115S115PTcaCca55B.1.1.70.000004
ORF1ab/nsp12115S115XtCatAa240.111111
ORF1ab/nsp12115S115XtCatGa240.111111
ORF1ab/nsp12115S115StcAtcG34AY.40.000005
ORF1ab/nsp12115S115StcAtcC14AY.40.000002
ORF1ab/nsp12115S115StcAtcG44B.1.177.810.000757
ORF1ab/nsp12115S115ATcaGca44B.1.6370.000292
ORF1ab/nsp12115S115TTcaAca33All0.000001
ORF1ab/nsp12115S115StcAtcG33AY.1170.000254
ORF1ab/nsp12115S115StcAtcG33AY.160.001139
ORF1ab/nsp12115S115XtCatAa33B.10.000027
ORF1ab/nsp12115S115ATcaGca33B.1.1.5190.000119
ORF1ab/nsp12115S115del1tCat-a33B.1.177.820.001432
ORF1ab/nsp12115S115del1tCat-a33B.1.3510.000089
ORF1ab/nsp12115S115StcAtcC33P.10.000047
ORF1ab/nsp12115S115ATcaGca33P.1.10.000953
ORF1ab/nsp12115S115PTcACcT220.111111
ORF1ab/nsp12115S115LTCACTT220.111111
ORF1ab/nsp12115S115ATcAGcT220.111111
ORF1ab/nsp12115S115StcAtcG22AY.1020.000053
ORF1ab/nsp12115S115delTCA---22AY.1200.000074
ORF1ab/nsp12115S115StcAtcT22AY.250.000012
ORF1ab/nsp12115S115delTCA---22AY.250.000012
ORF1ab/nsp12115S115StcAtcG22AY.30.00002
ORF1ab/nsp12115S115ATcaGca22AY.300.000791
ORF1ab/nsp12115S115delTCA---22AY.40.000003
ORF1ab/nsp12115S115delTCA---22AY.4.50.000215
ORF1ab/nsp12115S115ATcaGca22AY.440.000012
ORF1ab/nsp12115S115del1tCat-a22AY.520.001629
ORF1ab/nsp12115S115PTcaCca22B.10.000018
ORF1ab/nsp12115S115PTcaCca22B.1.10.000036
ORF1ab/nsp12115S115StcAtcT12B.1.10.000018
ORF1ab/nsp12115S115StcAtcG12B.1.10.000018
ORF1ab/nsp12115S115XtCatAa22B.1.1.70.000002
ORF1ab/nsp12115S115StcAtcG22B.1.20.000018
ORF1ab/nsp12115S115StcAtcG22B.1.4970.00063
ORF1ab/nsp12115S115StcAtcG22B.1.617.20.000008
ORF1ab/nsp12115S115ATcaGca11A0.000387
ORF1ab/nsp12115S115RTCaCGa11All0
ORF1ab/nsp12115S115ITCaATa11All0
ORF1ab/nsp12115S115FtCAtTT11All0
ORF1ab/nsp12115S115StcAtcG11AY.1010.00049
ORF1ab/nsp12115S115StcAtcG11AY.1030.000006
ORF1ab/nsp12115S115delTCA---11AY.1170.000085
ORF1ab/nsp12115S115delTCA---11AY.260.000028
ORF1ab/nsp12115S115PTcaCca11AY.260.000028
ORF1ab/nsp12115S115StcAtcG11AY.380.000499
ORF1ab/nsp12115S115ATcaGca11AY.40.000002
ORF1ab/nsp12115S115PTcaCca11AY.40.000002
ORF1ab/nsp12115S115LtCatTa11AY.430.000004
ORF1ab/nsp12115S115delTCA---11AY.46.60.000072
ORF1ab/nsp12115S115ATcaGca11AY.5.30.000337
ORF1ab/nsp12115S115PTcaCca11AY.590.00053
ORF1ab/nsp12115S115StcAtcG11AY.60.000041
ORF1ab/nsp12115S115delTCA---11AY.80.000606
ORF1ab/nsp12115S115delTCA---11AY.990.001049
ORF1ab/nsp12115S115PTcACcG11AY.990.001049
ORF1ab/nsp12115S115StcAtcG11B.10.000009
ORF1ab/nsp12115S115ATcaGca11B.1.10.000018
ORF1ab/nsp12115S115ITCaATa11B.1.10.000018
ORF1ab/nsp12115S115delTCA---11B.1.10.000018
ORF1ab/nsp12115S115delTCA---11B.1.1.10.000327
ORF1ab/nsp12115S115delTCA---11B.1.1.1390.022727
ORF1ab/nsp12115S115delTCA---11B.1.1.2360.006897
ORF1ab/nsp12115S115delTCA---11B.1.1.3480.000796
ORF1ab/nsp12115S115PTcaCca11B.1.1.4200.001006
ORF1ab/nsp12115S115StcAtcG11B.1.1.4480.002033
ORF1ab/nsp12115S115LtCatTa11B.1.1.70.000001
ORF1ab/nsp12115S115del1tCat-a11B.1.1600.000031
ORF1ab/nsp12115S115TTcaAca11B.1.1600.000031
ORF1ab/nsp12115S115XtCatAa11B.1.1770.000013
ORF1ab/nsp12115S115del1tCat-a11B.1.177.60.000977
ORF1ab/nsp12115S115StcAtcG11B.1.2470.014925
ORF1ab/nsp12115S115StcAtcG11B.1.3510.00003
ORF1ab/nsp12115S115del1tCat-a11B.1.36.10.00114
ORF1ab/nsp12115S115StcAtcG11B.1.3690.000285
ORF1ab/nsp12115S115PTcaCca11B.1.4000.000429
ORF1ab/nsp12115S115RTCaCGa11B.1.4150.014286
ORF1ab/nsp12115S115StcAtcC11B.1.4590.004082
ORF1ab/nsp12115S115ATcaGca11B.1.4620.007246
ORF1ab/nsp12115S115StcAtcG11B.1.4700.001404
ORF1ab/nsp12115S115PTcaCca11B.1.5750.000303
ORF1ab/nsp12115S115ATcaGca11B.1.617.20.000004
ORF1ab/nsp12115S115LtCatTa11B.1.617.20.000004
ORF1ab/nsp12115S115delTCA---11B.1.6300.005236
ORF1ab/nsp12115S115ATcaGca11C.350.000774
ORF1ab/nsp12115S115TTcaAca11D.20.000075
ORF1ab/nsp12115S115LtCatTa11D.20.000075
ORF1ab/nsp12115S115ATcaGca11P.10.000016
ORF1ab/nsp12115S115TTcaAca11P.10.000016
ORF1ab/nsp12115S115FtCAtTT11Q.10.000126
ORF1ab/nsp12115S115delTCA---11Q.20.000613