CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp10 : Mut = V108V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp10108V108VV4361VsyngtGgtT317330200.95178113346-13348
ORF1ab/nsp10108V108VV4361VsyngtGgtA31731380.04349213346-13348
ORF1ab/nsp10108V108VV4361VsyngtGgtC3173150.0047273913346-13348

Details of the mutation V108V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp10108V108VgtGgtT30203173All0.000578
ORF1ab/nsp10108V108VgtGgtA1383173All0.000026
ORF1ab/nsp10108V108VgtGgtC153173All0.000003
ORF1ab/nsp10108V108VgtGgtT459470AY.40.000714
ORF1ab/nsp10108V108VgtGgtA11470AY.40.000017
ORF1ab/nsp10108V108VgtGgtT363376B.1.1.70.000325
ORF1ab/nsp10108V108VgtGgtA12376B.1.1.70.000011
ORF1ab/nsp10108V108VgtGgtC1376B.1.1.70.000001
ORF1ab/nsp10108V108VgtGgtT304315B.1.617.20.001145
ORF1ab/nsp10108V108VgtGgtA10315B.1.617.20.000038
ORF1ab/nsp10108V108VgtGgtC1315B.1.617.20.000004
ORF1ab/nsp10108V108VgtGgtT263276AY.1030.001633
ORF1ab/nsp10108V108VgtGgtA13276AY.1030.000081
ORF1ab/nsp10108V108VgtGgtT181182AY.470.00563
ORF1ab/nsp10108V108VgtGgtA1182AY.470.000031
ORF1ab/nsp10108V108VgtGgtT148148B.1.5440.891566
ORF1ab/nsp10108V108VgtGgtT125128AY.250.000752
ORF1ab/nsp10108V108VgtGgtA3128AY.250.000018
ORF1ab/nsp10108V108VgtGgtT103103AY.60.004236
ORF1ab/nsp10108V108VgtGgtT7682B.10.000696
ORF1ab/nsp10108V108VgtGgtA482B.10.000037
ORF1ab/nsp10108V108VgtGgtC282B.10.000018
ORF1ab/nsp10108V108VgtGgtT6472AY.430.000284
ORF1ab/nsp10108V108VgtGgtA872AY.430.000035
ORF1ab/nsp10108V108VgtGgtT5972AY.440.000359
ORF1ab/nsp10108V108VgtGgtA1172AY.440.000067
ORF1ab/nsp10108V108VgtGgtC272AY.440.000012
ORF1ab/nsp10108V108VgtGgtT4449AY.30.000438
ORF1ab/nsp10108V108VgtGgtA549AY.30.00005
ORF1ab/nsp10108V108VgtGgtT4647P.10.000725
ORF1ab/nsp10108V108VgtGgtA147P.10.000016
ORF1ab/nsp10108V108VgtGgtT3238AY.1020.000848
ORF1ab/nsp10108V108VgtGgtA638AY.1020.000159
ORF1ab/nsp10108V108VgtGgtT3838B.1.1.370.007329
ORF1ab/nsp10108V108VgtGgtT3133B.1.10.000562
ORF1ab/nsp10108V108VgtGgtA233B.1.10.000036
ORF1ab/nsp10108V108VgtGgtT3233B.1.20.000282
ORF1ab/nsp10108V108VgtGgtA133B.1.20.000009
ORF1ab/nsp10108V108VgtGgtT3032B.1.5260.000705
ORF1ab/nsp10108V108VgtGgtA232B.1.5260.000047
ORF1ab/nsp10108V108VgtGgtT2528B.1.1770.000329
ORF1ab/nsp10108V108VgtGgtA328B.1.1770.00004
ORF1ab/nsp10108V108VgtGgtT2727B.1.3510.000803
ORF1ab/nsp10108V108VgtGgtT2626AY.1170.002197
ORF1ab/nsp10108V108VgtGgtT2626AY.1200.000967
ORF1ab/nsp10108V108VgtGgtT2222A.2.5.20.034591
ORF1ab/nsp10108V108VgtGgtT1920AY.260.000538
ORF1ab/nsp10108V108VgtGgtA120AY.260.000028
ORF1ab/nsp10108V108VgtGgtT1418AY.390.000346
ORF1ab/nsp10108V108VgtGgtA318AY.390.000074
ORF1ab/nsp10108V108VgtGgtC118AY.390.000025
ORF1ab/nsp10108V108VgtGgtT1616AY.200.000622
ORF1ab/nsp10108V108VgtGgtT1515AY.980.001185
ORF1ab/nsp10108V108VgtGgtT1515B.1.1.1960.085714
ORF1ab/nsp10108V108VgtGgtT1313AY.910.009496
ORF1ab/nsp10108V108VgtGgtT1112C.370.001277
ORF1ab/nsp10108V108VgtGgtC112C.370.000116
ORF1ab/nsp10108V108VgtGgtT711AY.50.000145
ORF1ab/nsp10108V108VgtGgtA411AY.50.000083
ORF1ab/nsp10108V108VgtGgtT1111B.1.1.510.0189
ORF1ab/nsp10108V108VgtGgtA611B.1.5960.000523
ORF1ab/nsp10108V108VgtGgtT511B.1.5960.000436
ORF1ab/nsp10108V108VgtGgtT1010B.1.2100.021322
ORF1ab/nsp10108V108VgtGgtT1010B.1.3180.384615
ORF1ab/nsp10108V108VgtGgtT89AY.1000.000368
ORF1ab/nsp10108V108VgtGgtA19AY.1000.000046
ORF1ab/nsp10108V108VgtGgtT99AY.270.000582
ORF1ab/nsp10108V108VgtGgtT99B.1.2430.000626
ORF1ab/nsp10108V108VgtGgtT89B.1.4290.000188
ORF1ab/nsp10108V108VgtGgtC19B.1.4290.000024
ORF1ab/nsp10108V108VgtGgtT88AY.610.000838
ORF1ab/nsp10108V108VgtGgtT88B.1.1.3170.003294
ORF1ab/nsp10108V108VgtGgtT78P.20.001306
ORF1ab/nsp10108V108VgtGgtA18P.20.000187
ORF1ab/nsp10108V108VgtGgtT77AY.290.00011
ORF1ab/nsp10108V108VgtGgtT57AY.420.000201
ORF1ab/nsp10108V108VgtGgtC27AY.420.00008
ORF1ab/nsp10108V108VgtGgtT46B.1.2210.000284
ORF1ab/nsp10108V108VgtGgtA26B.1.2210.000142
ORF1ab/nsp10108V108VgtGgtT56B.1.2580.000333
ORF1ab/nsp10108V108VgtGgtA16B.1.2580.000067
ORF1ab/nsp10108V108VgtGgtT56B.1.360.00073
ORF1ab/nsp10108V108VgtGgtA16B.1.360.000146
ORF1ab/nsp10108V108VgtGgtA66B.1.3610.007732
ORF1ab/nsp10108V108VgtGgtT66B.1.5270.022222
ORF1ab/nsp10108V108VgtGgtT66B.1.6210.000531
ORF1ab/nsp10108V108VgtGgtT66B.400.002186
ORF1ab/nsp10108V108VgtGgtT55AY.1190.000177
ORF1ab/nsp10108V108VgtGgtT55AY.120.20.006427
ORF1ab/nsp10108V108VgtGgtT55AY.230.000349
ORF1ab/nsp10108V108VgtGgtT55AY.4.20.000108
ORF1ab/nsp10108V108VgtGgtT55B.1.1.5190.000199
ORF1ab/nsp10108V108VgtGgtT55B.1.1.580.026882
ORF1ab/nsp10108V108VgtGgtT34AY.330.0002
ORF1ab/nsp10108V108VgtGgtA14AY.330.000067
ORF1ab/nsp10108V108VgtGgtT44AY.920.001149
ORF1ab/nsp10108V108VgtGgtA34B.1.177.600.000655
ORF1ab/nsp10108V108VgtGgtT14B.1.177.600.000218
ORF1ab/nsp10108V108VgtGgtT44B.1.177.690.005935
ORF1ab/nsp10108V108VgtGgtT44B.1.3110.001098
ORF1ab/nsp10108V108VgtGgtT44B.1.36.290.002069
ORF1ab/nsp10108V108VgtGgtT44B.1.5250.000453
ORF1ab/nsp10108V108VgtGgtT44C.180.010363
ORF1ab/nsp10108V108VgtGgtT33A0.001161
ORF1ab/nsp10108V108VgtGgtT33AE.80.001467
ORF1ab/nsp10108V108VgtGgtT33AY.7.10.000338
ORF1ab/nsp10108V108VgtGgtT33AY.90.000203
ORF1ab/nsp10108V108VgtGgtT33AY.990.003148
ORF1ab/nsp10108V108VgtGgtT33B0.000383
ORF1ab/nsp10108V108VgtGgtT33B.1.1.2160.002671
ORF1ab/nsp10108V108VgtGgtT33B.1.1.330.001263
ORF1ab/nsp10108V108VgtGgtT13B.1.1600.000031
ORF1ab/nsp10108V108VgtGgtA13B.1.1600.000031
ORF1ab/nsp10108V108VgtGgtC13B.1.1600.000031
ORF1ab/nsp10108V108VgtGgtT33B.1.177.70.000495
ORF1ab/nsp10108V108VgtGgtT33B.1.4200.03125
ORF1ab/nsp10108V108VgtGgtA23B.1.5230.004902
ORF1ab/nsp10108V108VgtGgtT13B.1.5230.002451
ORF1ab/nsp10108V108VgtGgtT33P.1.120.001452
ORF1ab/nsp10108V108VgtGgtT33P.1.150.000697
ORF1ab/nsp10108V108VgtGgtT33Q.40.001364
ORF1ab/nsp10108V108VgtGgtT220.111111
ORF1ab/nsp10108V108VgtGgtT12AY.1110.000183
ORF1ab/nsp10108V108VgtGgtA12AY.1110.000183
ORF1ab/nsp10108V108VgtGgtT22AY.34.10.00102
ORF1ab/nsp10108V108VgtGgtT22AY.380.000999
ORF1ab/nsp10108V108VgtGgtT22AY.400.001929
ORF1ab/nsp10108V108VgtGgtT22AY.450.000243
ORF1ab/nsp10108V108VgtGgtT22AY.460.000208
ORF1ab/nsp10108V108VgtGgtT22AY.46.50.000397
ORF1ab/nsp10108V108VgtGgtC12AY.46.60.000072
ORF1ab/nsp10108V108VgtGgtT12AY.46.60.000072
ORF1ab/nsp10108V108VgtGgtT22AY.5.10.007519
ORF1ab/nsp10108V108VgtGgtT22AY.750.000112
ORF1ab/nsp10108V108VgtGgtT22AY.870.001665
ORF1ab/nsp10108V108VgtGgtT22AY.9.10.000167
ORF1ab/nsp10108V108VgtGgtT22AY.9.20.000073
ORF1ab/nsp10108V108VgtGgtT22B.1.1.2140.000111
ORF1ab/nsp10108V108VgtGgtT22B.1.1.2220.000408
ORF1ab/nsp10108V108VgtGgtT22B.1.1.250.001137
ORF1ab/nsp10108V108VgtGgtT22B.1.1.280.000622
ORF1ab/nsp10108V108VgtGgtT22B.1.1.2940.002532
ORF1ab/nsp10108V108VgtGgtT22B.1.1.4860.003155
ORF1ab/nsp10108V108VgtGgtT22B.1.1.500.001358
ORF1ab/nsp10108V108VgtGgtT22B.1.2390.002442
ORF1ab/nsp10108V108VgtGgtT22B.1.3490.00143
ORF1ab/nsp10108V108VgtGgtT22B.1.5680.002222
ORF1ab/nsp10108V108VgtGgtT22B.1.5820.000981
ORF1ab/nsp10108V108VgtGgtT22B.1.5870.003795
ORF1ab/nsp10108V108VgtGgtT22B.1.5950.000522
ORF1ab/nsp10108V108VgtGgtT22B.1.6280.000705
ORF1ab/nsp10108V108VgtGgtT22B.1.6370.000146
ORF1ab/nsp10108V108VgtGgtT22B.230.005848
ORF1ab/nsp10108V108VgtGgtT22L.30.007092
ORF1ab/nsp10108V108VgtGgtT22P.1.70.000639
ORF1ab/nsp10108V108VgtGgtT22Q.10.000253
ORF1ab/nsp10108V108VgtGgtA11AY.1040.001984
ORF1ab/nsp10108V108VgtGgtT11AY.1060.000335
ORF1ab/nsp10108V108VgtGgtT11AY.1070.000466
ORF1ab/nsp10108V108VgtGgtT11AY.1080.001103
ORF1ab/nsp10108V108VgtGgtT11AY.1090.00074
ORF1ab/nsp10108V108VgtGgtT11AY.1100.000113
ORF1ab/nsp10108V108VgtGgtT11AY.1160.000287
ORF1ab/nsp10108V108VgtGgtT11AY.1180.000063
ORF1ab/nsp10108V108VgtGgtA11AY.120.10.000321
ORF1ab/nsp10108V108VgtGgtT11AY.120.2.10.000498
ORF1ab/nsp10108V108VgtGgtT11AY.140.000088
ORF1ab/nsp10108V108VgtGgtA11AY.160.00038
ORF1ab/nsp10108V108VgtGgtT11AY.16.10.00047
ORF1ab/nsp10108V108VgtGgtT11AY.20.000356
ORF1ab/nsp10108V108VgtGgtT11AY.3.10.000085
ORF1ab/nsp10108V108VgtGgtT11AY.320.000532
ORF1ab/nsp10108V108VgtGgtT11AY.340.000097
ORF1ab/nsp10108V108VgtGgtT11AY.39.10.00004
ORF1ab/nsp10108V108VgtGgtT11AY.4.40.000409
ORF1ab/nsp10108V108VgtGgtT11AY.4.50.000107
ORF1ab/nsp10108V108VgtGgtT11AY.46.30.000934
ORF1ab/nsp10108V108VgtGgtT11AY.46.40.000165
ORF1ab/nsp10108V108VgtGgtT11AY.480.000465
ORF1ab/nsp10108V108VgtGgtT11AY.5.30.000337
ORF1ab/nsp10108V108VgtGgtA11AY.510.000909
ORF1ab/nsp10108V108VgtGgtT11AY.520.000814
ORF1ab/nsp10108V108VgtGgtT11AY.530.000288
ORF1ab/nsp10108V108VgtGgtT11AY.540.000095
ORF1ab/nsp10108V108VgtGgtT11AY.560.001605
ORF1ab/nsp10108V108VgtGgtT11AY.590.00053
ORF1ab/nsp10108V108VgtGgtT11AY.650.000533
ORF1ab/nsp10108V108VgtGgtA11AY.670.000464
ORF1ab/nsp10108V108VgtGgtT11AY.70.000196
ORF1ab/nsp10108V108VgtGgtT11AY.710.000475
ORF1ab/nsp10108V108VgtGgtT11AY.740.000116
ORF1ab/nsp10108V108VgtGgtT11AY.810.001992
ORF1ab/nsp10108V108VgtGgtA11AY.840.000437
ORF1ab/nsp10108V108VgtGgtT11AY.890.004902
ORF1ab/nsp10108V108VgtGgtT11AY.930.000273
ORF1ab/nsp10108V108VgtGgtT11B.1.1.10.000327
ORF1ab/nsp10108V108VgtGgtT11B.1.1.1710.003676
ORF1ab/nsp10108V108VgtGgtT11B.1.1.1910.004762
ORF1ab/nsp10108V108VgtGgtT11B.1.1.1940.00495
ORF1ab/nsp10108V108VgtGgtT11B.1.1.2050.003717
ORF1ab/nsp10108V108VgtGgtT11B.1.1.2300.009174
ORF1ab/nsp10108V108VgtGgtT11B.1.1.2690.001353
ORF1ab/nsp10108V108VgtGgtT11B.1.1.2770.000759
ORF1ab/nsp10108V108VgtGgtT11B.1.1.2840.000107
ORF1ab/nsp10108V108VgtGgtT11B.1.1.2890.002083
ORF1ab/nsp10108V108VgtGgtT11B.1.1.2910.000742
ORF1ab/nsp10108V108VgtGgtA11B.1.1.3090.005848
ORF1ab/nsp10108V108VgtGgtT11B.1.1.3180.000302
ORF1ab/nsp10108V108VgtGgtT11B.1.1.3480.000796
ORF1ab/nsp10108V108VgtGgtT11B.1.1.50.008333
ORF1ab/nsp10108V108VgtGgtT11B.1.1.5210.005348
ORF1ab/nsp10108V108VgtGgtT11B.1.1.700.000341
ORF1ab/nsp10108V108VgtGgtT11B.1.1.80.003584
ORF1ab/nsp10108V108VgtGgtT11B.1.1310.008772
ORF1ab/nsp10108V108VgtGgtT11B.1.1650.011905
ORF1ab/nsp10108V108VgtGgtT11B.1.177.170.000821
ORF1ab/nsp10108V108VgtGgtT11B.1.177.180.00116
ORF1ab/nsp10108V108VgtGgtT11B.1.177.40.000211
ORF1ab/nsp10108V108VgtGgtT11B.1.177.460.000918
ORF1ab/nsp10108V108VgtGgtT11B.1.177.550.002331
ORF1ab/nsp10108V108VgtGgtA11B.1.177.810.000189
ORF1ab/nsp10108V108VgtGgtT11B.1.2140.003663
ORF1ab/nsp10108V108VgtGgtT11B.1.2180.005155
ORF1ab/nsp10108V108VgtGgtT11B.1.2220.001692
ORF1ab/nsp10108V108VgtGgtT11B.1.2340.000132
ORF1ab/nsp10108V108VgtGgtT11B.1.2400.000216
ORF1ab/nsp10108V108VgtGgtT11B.1.2790.000514
ORF1ab/nsp10108V108VgtGgtT11B.1.351.20.000303
ORF1ab/nsp10108V108VgtGgtT11B.1.36.160.001425
ORF1ab/nsp10108V108VgtGgtT11B.1.3670.000792
ORF1ab/nsp10108V108VgtGgtT11B.1.3890.001002
ORF1ab/nsp10108V108VgtGgtT11B.1.3960.000706
ORF1ab/nsp10108V108VgtGgtT11B.1.416.10.001563
ORF1ab/nsp10108V108VgtGgtT11B.1.4270.00005
ORF1ab/nsp10108V108VgtGgtT11B.1.4700.001404
ORF1ab/nsp10108V108VgtGgtT11B.1.5170.000427
ORF1ab/nsp10108V108VgtGgtT11B.1.5550.022222
ORF1ab/nsp10108V108VgtGgtT11B.1.5760.000907
ORF1ab/nsp10108V108VgtGgtC11B.1.5770.000687
ORF1ab/nsp10108V108VgtGgtT11B.1.5900.004545
ORF1ab/nsp10108V108VgtGgtT11B.1.617.10.000129
ORF1ab/nsp10108V108VgtGgtA11B.1.6230.000536
ORF1ab/nsp10108V108VgtGgtT11B.1.6360.006711
ORF1ab/nsp10108V108VgtGgtT11B.6.60.000889
ORF1ab/nsp10108V108VgtGgtT11C.10.002392
ORF1ab/nsp10108V108VgtGgtA11C.170.055556
ORF1ab/nsp10108V108VgtGgtT11C.350.000774
ORF1ab/nsp10108V108VgtGgtA11C.360.000911
ORF1ab/nsp10108V108VgtGgtT11C.36.30.000567
ORF1ab/nsp10108V108VgtGgtT11N.50.001767
ORF1ab/nsp10108V108VgtGgtT11P.1.140.000048
ORF1ab/nsp10108V108VgtGgtC11P.1.20.001156
ORF1ab/nsp10108V108VgtGgtT11P.30.001595
ORF1ab/nsp10108V108VgtGgtT11Q.30.000145
ORF1ab/nsp10108V108VgtGgtT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.