CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp10 : Mut = T12T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1012T12TT4265TsynacTacC6525990.91871213058-13060
ORF1ab/nsp1012T12TT4265TsynacTacG652360.055214713058-13060
ORF1ab/nsp1012T12TT4265TsynacTacA652170.026073613058-13060

Details of the mutation T12T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1012T12TacTacC599652All0.000115
ORF1ab/nsp1012T12TacTacG36652All0.000007
ORF1ab/nsp1012T12TacTacA17652All0.000003
ORF1ab/nsp1012T12TacTacC548548B.1.1.3330.589882
ORF1ab/nsp1012T12TacTacC911B.1.617.20.000034
ORF1ab/nsp1012T12TacTacA211B.1.617.20.000008
ORF1ab/nsp1012T12TacTacC69AY.40.000009
ORF1ab/nsp1012T12TacTacA39AY.40.000005
ORF1ab/nsp1012T12TacTacA77AY.300.00277
ORF1ab/nsp1012T12TacTacC37B.1.20.000026
ORF1ab/nsp1012T12TacTacG37B.1.20.000026
ORF1ab/nsp1012T12TacTacA17B.1.20.000009
ORF1ab/nsp1012T12TacTacC46B.1.1.70.000004
ORF1ab/nsp1012T12TacTacG26B.1.1.70.000002
ORF1ab/nsp1012T12TacTacC66B.1.360.000875
ORF1ab/nsp1012T12TacTacC44AY.610.000419
ORF1ab/nsp1012T12TacTacC33AY.1050.001929
ORF1ab/nsp1012T12TacTacG33AY.260.000085
ORF1ab/nsp1012T12TacTacG33AY.440.000018
ORF1ab/nsp1012T12TacTacC23B.10.000018
ORF1ab/nsp1012T12TacTacG13B.10.000009
ORF1ab/nsp1012T12TacTacG33B.1.1.2220.000612
ORF1ab/nsp1012T12TacTacC33B.1.1.250.001706
ORF1ab/nsp1012T12TacTacG33B.1.2430.000209
ORF1ab/nsp1012T12TacTacG33B.1.4270.000151
ORF1ab/nsp1012T12TacTacG33B.1.5100.078947
ORF1ab/nsp1012T12TacTacG12AY.1030.000006
ORF1ab/nsp1012T12TacTacC12AY.1030.000006
ORF1ab/nsp1012T12TacTacC22AY.1140.000462
ORF1ab/nsp1012T12TacTacA22B.1.1920.018519
ORF1ab/nsp1012T12TacTacG22B.1.2320.001075
ORF1ab/nsp1012T12TacTacG22B.1.4290.000047
ORF1ab/nsp1012T12TacTacC22B.1.5170.000854
ORF1ab/nsp1012T12TacTacG11AY.100.00053
ORF1ab/nsp1012T12TacTacG11AY.250.000006
ORF1ab/nsp1012T12TacTacC11AY.30.00001
ORF1ab/nsp1012T12TacTacC11AY.390.000025
ORF1ab/nsp1012T12TacTacG11AY.540.000095
ORF1ab/nsp1012T12TacTacG11AY.750.000056
ORF1ab/nsp1012T12TacTacC11AY.75.10.00018
ORF1ab/nsp1012T12TacTacG11B.1.1.5190.00004
ORF1ab/nsp1012T12TacTacA11B.1.160.170.001701
ORF1ab/nsp1012T12TacTacC11B.1.1770.000013
ORF1ab/nsp1012T12TacTacC11B.1.5260.000024
ORF1ab/nsp1012T12TacTacG11B.1.5610.000397
ORF1ab/nsp1012T12TacTacG11B.1.700.02439
ORF1ab/nsp1012T12TacTacC11C.36.30.000567
ORF1ab/nsp1012T12TacTacA11P.10.000016