CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp10 : Mut = R134S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp10134R134SR4387SnonsynCgcAgc176117600.99943213424-13426
ORF1ab/nsp10134R134SR4387SnonsynCgCAgT176110.00056785913424-13426

Details of the mutation R134S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp10134R134SCgcAgc17601761All0.000337
ORF1ab/nsp10134R134SCgCAgT11761All0
ORF1ab/nsp10134R134SCgcAgc639639B.1.1.70.000572
ORF1ab/nsp10134R134SCgcAgc178178AY.40.000277
ORF1ab/nsp10134R134SCgcAgc104104AY.30.001034
ORF1ab/nsp10134R134SCgcAgc7777AY.1030.000478
ORF1ab/nsp10134R134SCgcAgc5252AY.250.000313
ORF1ab/nsp10134R134SCgcAgc5252B.1.617.20.000196
ORF1ab/nsp10134R134SCgcAgc4343B.1.5260.001011
ORF1ab/nsp10134R134SCgcAgc4141AY.440.00025
ORF1ab/nsp10134R134SCgcAgc3434AY.1170.002874
ORF1ab/nsp10134R134SCgcAgc3232AY.390.000791
ORF1ab/nsp10134R134SCgcAgc3030B.1.5170.01281
ORF1ab/nsp10134R134SCgcAgc2727AY.420.001086
ORF1ab/nsp10134R134SCgcAgc2727AY.430.00012
ORF1ab/nsp10134R134SCgcAgc2626P.10.00041
ORF1ab/nsp10134R134SCgcAgc2020AY.740.002313
ORF1ab/nsp10134R134SCgcAgc2020AY.98.10.000969
ORF1ab/nsp10134R134SCgcAgc1919AY.200.000738
ORF1ab/nsp10134R134SCgcAgc1818AY.46.40.002961
ORF1ab/nsp10134R134SCgcAgc1515B.1.1.5190.000596
ORF1ab/nsp10134R134SCgcAgc1111AY.1190.000388
ORF1ab/nsp10134R134SCgcAgc1111AY.29.10.002426
ORF1ab/nsp10134R134SCgcAgc1010AY.4.20.000217
ORF1ab/nsp10134R134SCgcAgc1010B.1.6280.003524
ORF1ab/nsp10134R134SCgcAgc99AY.1020.000239
ORF1ab/nsp10134R134SCgcAgc99B.1.177.210.000688
ORF1ab/nsp10134R134SCgcAgc99B.1.4290.000212
ORF1ab/nsp10134R134SCgcAgc77AY.1000.000322
ORF1ab/nsp10134R134SCgcAgc77B.10.000064
ORF1ab/nsp10134R134SCgcAgc77B.1.1770.000092
ORF1ab/nsp10134R134SCgcAgc77B.1.3510.000208
ORF1ab/nsp10134R134SCgcAgc66AY.290.000095
ORF1ab/nsp10134R134SCgcAgc66AY.60.000247
ORF1ab/nsp10134R134SCgcAgc66B.1.10.000109
ORF1ab/nsp10134R134SCgcAgc66B.1.20.000053
ORF1ab/nsp10134R134SCgcAgc66B.1.2580.000399
ORF1ab/nsp10134R134SCgcAgc66P.1.10.001906
ORF1ab/nsp10134R134SCgcAgc55AY.330.000334
ORF1ab/nsp10134R134SCgcAgc55AY.610.000524
ORF1ab/nsp10134R134SCgcAgc55B.1.4270.000252
ORF1ab/nsp10134R134SCgcAgc55B.1.6370.000365
ORF1ab/nsp10134R134SCgcAgc44AY.50.000083
ORF1ab/nsp10134R134SCgcAgc44AY.880.003537
ORF1ab/nsp10134R134SCgcAgc44AY.90.00027
ORF1ab/nsp10134R134SCgcAgc44AY.9.20.000147
ORF1ab/nsp10134R134SCgcAgc44AY.980.000316
ORF1ab/nsp10134R134SCgcAgc44AY.99.20.000369
ORF1ab/nsp10134R134SCgcAgc44B.1.177.650.002661
ORF1ab/nsp10134R134SCgcAgc44B.1.258.170.000416
ORF1ab/nsp10134R134SCgcAgc44B.1.5960.000349
ORF1ab/nsp10134R134SCgcAgc44P.1.170.000647
ORF1ab/nsp10134R134SCgcAgc33AY.1060.001005
ORF1ab/nsp10134R134SCgcAgc33AY.130.000483
ORF1ab/nsp10134R134SCgcAgc33AY.230.000209
ORF1ab/nsp10134R134SCgcAgc33AY.23.10.001252
ORF1ab/nsp10134R134SCgcAgc33AY.260.000085
ORF1ab/nsp10134R134SCgcAgc33AY.4.50.000322
ORF1ab/nsp10134R134SCgcAgc33AY.46.60.000217
ORF1ab/nsp10134R134SCgcAgc33AY.540.000286
ORF1ab/nsp10134R134SCgcAgc33B.1.2400.000647
ORF1ab/nsp10134R134SCgcAgc33P.1.120.001452
ORF1ab/nsp10134R134SCgcAgc33P.1.140.000143
ORF1ab/nsp10134R134SCgcAgc22AY.1200.000074
ORF1ab/nsp10134R134SCgcAgc22AY.160.000759
ORF1ab/nsp10134R134SCgcAgc22AY.340.000194
ORF1ab/nsp10134R134SCgcAgc22AY.39.10.000079
ORF1ab/nsp10134R134SCgcAgc22AY.750.000112
ORF1ab/nsp10134R134SCgcAgc22AY.99.10.003106
ORF1ab/nsp10134R134SCgcAgc22B.1.1.3180.000604
ORF1ab/nsp10134R134SCgcAgc22B.1.1.3470.036364
ORF1ab/nsp10134R134SCgcAgc22B.1.177.810.000379
ORF1ab/nsp10134R134SCgcAgc22B.1.3110.000549
ORF1ab/nsp10134R134SCgcAgc22B.1.5750.000607
ORF1ab/nsp10134R134SCgcAgc22B.1.619.10.001283
ORF1ab/nsp10134R134SCgcAgc22C.370.000232
ORF1ab/nsp10134R134SCgcAgc22P.30.00319
ORF1ab/nsp10134R134SCgcAgc11A0.000387
ORF1ab/nsp10134R134SCgcAgc11AY.1100.000113
ORF1ab/nsp10134R134SCgcAgc11AY.1130.000142
ORF1ab/nsp10134R134SCgcAgc11AY.1160.000287
ORF1ab/nsp10134R134SCgcAgc11AY.1210.000135
ORF1ab/nsp10134R134SCgcAgc11AY.150.002222
ORF1ab/nsp10134R134SCgcAgc11AY.270.000065
ORF1ab/nsp10134R134SCgcAgc11AY.3.10.000085
ORF1ab/nsp10134R134SCgcAgc11AY.300.000396
ORF1ab/nsp10134R134SCgcAgc11AY.360.000148
ORF1ab/nsp10134R134SCgcAgc11AY.4.2.10.000149
ORF1ab/nsp10134R134SCgcAgc11AY.46.50.000198
ORF1ab/nsp10134R134SCgcAgc11AY.470.000031
ORF1ab/nsp10134R134SCgcAgc11AY.490.003195
ORF1ab/nsp10134R134SCgcAgc11AY.5.30.000337
ORF1ab/nsp10134R134SCgcAgc11AY.510.000909
ORF1ab/nsp10134R134SCgcAgc11AY.570.000656
ORF1ab/nsp10134R134SCgcAgc11AY.7.10.000113
ORF1ab/nsp10134R134SCgcAgc11AY.710.000475
ORF1ab/nsp10134R134SCgcAgc11AY.790.001211
ORF1ab/nsp10134R134SCgcAgc11AY.80.000606
ORF1ab/nsp10134R134SCgcAgc11AY.850.000427
ORF1ab/nsp10134R134SCgcAgc11AY.9.10.000084
ORF1ab/nsp10134R134SCgcAgc11AY.990.001049
ORF1ab/nsp10134R134SCgcAgc11B.1.1.1530.001095
ORF1ab/nsp10134R134SCgcAgc11B.1.1.1690.018182
ORF1ab/nsp10134R134SCgcAgc11B.1.110.30.000718
ORF1ab/nsp10134R134SCgcAgc11B.1.1530.018868
ORF1ab/nsp10134R134SCgcAgc11B.1.177.170.000821
ORF1ab/nsp10134R134SCgcAgc11B.1.177.40.000211
ORF1ab/nsp10134R134SCgcAgc11B.1.177.600.000218
ORF1ab/nsp10134R134SCgcAgc11B.1.177.720.00339
ORF1ab/nsp10134R134SCgcAgc11B.1.2060.000816
ORF1ab/nsp10134R134SCgcAgc11B.1.2350.002519
ORF1ab/nsp10134R134SCgcAgc11B.1.258.210.007752
ORF1ab/nsp10134R134SCgcAgc11B.1.3260.007576
ORF1ab/nsp10134R134SCgcAgc11B.1.36.180.00042
ORF1ab/nsp10134R134SCgcAgc11B.1.36.290.000517
ORF1ab/nsp10134R134SCgcAgc11B.1.36.80.001
ORF1ab/nsp10134R134SCgcAgc11B.1.4010.008197
ORF1ab/nsp10134R134SCgcAgc11B.1.4160.001269
ORF1ab/nsp10134R134SCgcAgc11B.1.4900.1
ORF1ab/nsp10134R134SCgCAgT11B.1.5240.001406
ORF1ab/nsp10134R134SCgcAgc11B.1.5460.003704
ORF1ab/nsp10134R134SCgcAgc11B.1.5820.000491
ORF1ab/nsp10134R134SCgcAgc11B.1.596.10.009346
ORF1ab/nsp10134R134SCgcAgc11B.1.617.10.000129
ORF1ab/nsp10134R134SCgcAgc11B.1.6340.003425
ORF1ab/nsp10134R134SCgcAgc11C.80.004464
ORF1ab/nsp10134R134SCgcAgc11D.20.000075
ORF1ab/nsp10134R134SCgcAgc11P.1.150.000232
ORF1ab/nsp10134R134SCgcAgc11Q.10.000126
ORF1ab/nsp10134R134SCgcAgc11Q.80.000165