CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp10 : Mut = R134R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp10134R134RR4387RsyncgCcgT472246090.97606913424-13426
ORF1ab/nsp10134R134RR4387RsyncgCcgA47221050.022236313424-13426
ORF1ab/nsp10134R134RR4387RsyncgCcgG472270.0014824213424-13426
ORF1ab/nsp10134R134RR4387RsynCgCAgA472210.00021177513424-13426

Details of the mutation R134R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp10134R134RcgCcgT46094722All0.000882
ORF1ab/nsp10134R134RcgCcgA1054722All0.00002
ORF1ab/nsp10134R134RcgCcgG74722All0.000001
ORF1ab/nsp10134R134RCgCAgA14722All0
ORF1ab/nsp10134R134RcgCcgT16171653B.1.1.70.001448
ORF1ab/nsp10134R134RcgCcgA361653B.1.1.70.000032
ORF1ab/nsp10134R134RcgCcgT415415P.1.140.019837
ORF1ab/nsp10134R134RcgCcgT394401AY.40.000613
ORF1ab/nsp10134R134RcgCcgA7401AY.40.000011
ORF1ab/nsp10134R134RcgCcgT285285B.1.36.220.344203
ORF1ab/nsp10134R134RcgCcgT243245B.1.10.004408
ORF1ab/nsp10134R134RcgCcgG1245B.1.10.000018
ORF1ab/nsp10134R134RcgCcgA1245B.1.10.000018
ORF1ab/nsp10134R134RcgCcgT210210AY.1180.013156
ORF1ab/nsp10134R134RcgCcgT113113B.1.20.000995
ORF1ab/nsp10134R134RcgCcgT105110B.1.617.20.000395
ORF1ab/nsp10134R134RcgCcgG3110B.1.617.20.000011
ORF1ab/nsp10134R134RcgCcgA2110B.1.617.20.000008
ORF1ab/nsp10134R134RcgCcgT101101B.1.1.2510.801587
ORF1ab/nsp10134R134RcgCcgT5760B.1.4270.002878
ORF1ab/nsp10134R134RcgCcgA360B.1.4270.000151
ORF1ab/nsp10134R134RcgCcgT5253AY.30.000517
ORF1ab/nsp10134R134RcgCcgA153AY.30.00001
ORF1ab/nsp10134R134RcgCcgT5252AY.250.000313
ORF1ab/nsp10134R134RcgCcgT4447P.10.000693
ORF1ab/nsp10134R134RcgCcgA347P.10.000047
ORF1ab/nsp10134R134RcgCcgT4446B.10.000403
ORF1ab/nsp10134R134RcgCcgA246B.10.000018
ORF1ab/nsp10134R134RcgCcgT4344AY.1030.000267
ORF1ab/nsp10134R134RcgCcgA144AY.1030.000006
ORF1ab/nsp10134R134RcgCcgT4041B.1.2210.002841
ORF1ab/nsp10134R134RcgCcgA141B.1.2210.000071
ORF1ab/nsp10134R134RcgCcgT3237AY.440.000195
ORF1ab/nsp10134R134RcgCcgG337AY.440.000018
ORF1ab/nsp10134R134RcgCcgA237AY.440.000012
ORF1ab/nsp10134R134RcgCcgT3636AY.470.00112
ORF1ab/nsp10134R134RcgCcgT3535AY.1050.022508
ORF1ab/nsp10134R134RcgCcgA3233R.10.00288
ORF1ab/nsp10134R134RcgCcgT133R.10.00009
ORF1ab/nsp10134R134RcgCcgT3232AY.340.003103
ORF1ab/nsp10134R134RcgCcgT3232Q.80.005277
ORF1ab/nsp10134R134RcgCcgT2728B.1.1600.000842
ORF1ab/nsp10134R134RcgCcgA128B.1.1600.000031
ORF1ab/nsp10134R134RcgCcgT2627AY.200.00101
ORF1ab/nsp10134R134RcgCcgA127AY.200.000039
ORF1ab/nsp10134R134RcgCcgT2122AY.1020.000557
ORF1ab/nsp10134R134RCgCAgA122AY.1020.000027
ORF1ab/nsp10134R134RcgCcgT2222AY.430.000097
ORF1ab/nsp10134R134RcgCcgT2020B.1.1.5190.000794
ORF1ab/nsp10134R134RcgCcgT1818B.1.5960.001568
ORF1ab/nsp10134R134RcgCcgT1717AY.260.000481
ORF1ab/nsp10134R134RcgCcgT1717B.1.1.3690.007586
ORF1ab/nsp10134R134RcgCcgT1717B.1.1770.000224
ORF1ab/nsp10134R134RcgCcgT1616AY.390.000395
ORF1ab/nsp10134R134RcgCcgT1616AY.640.009524
ORF1ab/nsp10134R134RcgCcgT1515AY.90.001014
ORF1ab/nsp10134R134RcgCcgT1515B.1.6210.001328
ORF1ab/nsp10134R134RcgCcgT1314AY.230.000907
ORF1ab/nsp10134R134RcgCcgA114AY.230.00007
ORF1ab/nsp10134R134RcgCcgT1313B.1.258.170.001352
ORF1ab/nsp10134R134RcgCcgT1010AY.1160.002868
ORF1ab/nsp10134R134RcgCcgT1010AY.360.001482
ORF1ab/nsp10134R134RcgCcgT1010B.1.177.120.001517
ORF1ab/nsp10134R134RcgCcgT88C.370.000929
ORF1ab/nsp10134R134RcgCcgT77AY.1000.000322
ORF1ab/nsp10134R134RcgCcgT77AY.29.10.001544
ORF1ab/nsp10134R134RcgCcgA47AY.4.20.000087
ORF1ab/nsp10134R134RcgCcgT37AY.4.20.000065
ORF1ab/nsp10134R134RcgCcgT77AY.420.000282
ORF1ab/nsp10134R134RcgCcgT77B.1.360.001021
ORF1ab/nsp10134R134RcgCcgT77D.20.000525
ORF1ab/nsp10134R134RcgCcgT66AY.290.000095
ORF1ab/nsp10134R134RcgCcgT66AY.450.00073
ORF1ab/nsp10134R134RcgCcgT66B.1.1.2390.193548
ORF1ab/nsp10134R134RcgCcgT66B.1.2580.000399
ORF1ab/nsp10134R134RcgCcgT66B.1.3510.000178
ORF1ab/nsp10134R134RcgCcgT66B.1.4290.000141
ORF1ab/nsp10134R134RcgCcgT55AY.1190.000177
ORF1ab/nsp10134R134RcgCcgT55AY.1200.000186
ORF1ab/nsp10134R134RcgCcgT55AY.750.00028
ORF1ab/nsp10134R134RcgCcgT55B.1.2400.001078
ORF1ab/nsp10134R134RcgCcgT55B.1.5260.000118
ORF1ab/nsp10134R134RcgCcgT55B.1.6370.000365
ORF1ab/nsp10134R134RcgCcgT55P.1.170.000809
ORF1ab/nsp10134R134RcgCcgT44AY.1060.00134
ORF1ab/nsp10134R134RcgCcgT44AY.50.000083
ORF1ab/nsp10134R134RcgCcgT44AY.5.40.001107
ORF1ab/nsp10134R134RcgCcgT44AY.60.000165
ORF1ab/nsp10134R134RcgCcgT44AY.98.10.000194
ORF1ab/nsp10134R134RcgCcgT44B.1.1.1330.033898
ORF1ab/nsp10134R134RcgCcgT44B.1.1.1530.004381
ORF1ab/nsp10134R134RcgCcgT44B.1.1260.005102
ORF1ab/nsp10134R134RcgCcgT44B.1.617.10.000516
ORF1ab/nsp10134R134RcgCcgT33A.2.50.001497
ORF1ab/nsp10134R134RcgCcgT33AY.140.000264
ORF1ab/nsp10134R134RcgCcgT33AY.270.000194
ORF1ab/nsp10134R134RcgCcgA23AY.3.10.000171
ORF1ab/nsp10134R134RcgCcgT13AY.3.10.000085
ORF1ab/nsp10134R134RcgCcgT33AY.46.40.000494
ORF1ab/nsp10134R134RcgCcgT33AY.740.000347
ORF1ab/nsp10134R134RcgCcgT33AZ.20.002463
ORF1ab/nsp10134R134RcgCcgT33B.1.177.150.001893
ORF1ab/nsp10134R134RcgCcgT33B.1.240.10.075
ORF1ab/nsp10134R134RcgCcgT33B.1.2650.003812
ORF1ab/nsp10134R134RcgCcgT33B.1.5250.000339
ORF1ab/nsp10134R134RcgCcgT33B.1.5880.00273
ORF1ab/nsp10134R134RcgCcgT33P.1.120.001452
ORF1ab/nsp10134R134RcgCcgT22AY.100.00106
ORF1ab/nsp10134R134RcgCcgT22AY.1130.000285
ORF1ab/nsp10134R134RcgCcgT22AY.1170.000169
ORF1ab/nsp10134R134RcgCcgT22AY.1210.000271
ORF1ab/nsp10134R134RcgCcgA12AY.130.000161
ORF1ab/nsp10134R134RcgCcgT12AY.130.000161
ORF1ab/nsp10134R134RcgCcgT22AY.34.10.00102
ORF1ab/nsp10134R134RcgCcgT22AY.46.20.001271
ORF1ab/nsp10134R134RcgCcgT22AY.500.001599
ORF1ab/nsp10134R134RcgCcgT22AY.550.001835
ORF1ab/nsp10134R134RcgCcgT22AY.590.001059
ORF1ab/nsp10134R134RcgCcgT22AY.690.000373
ORF1ab/nsp10134R134RcgCcgT22AY.70.000392
ORF1ab/nsp10134R134RcgCcgT22AY.7.20.001119
ORF1ab/nsp10134R134RcgCcgT22AY.820.002714
ORF1ab/nsp10134R134RcgCcgT22AY.9.10.000167
ORF1ab/nsp10134R134RcgCcgT22AY.99.20.000184
ORF1ab/nsp10134R134RcgCcgT22AZ.30.00304
ORF1ab/nsp10134R134RcgCcgT22B.1.1.10.000653
ORF1ab/nsp10134R134RcgCcgT22B.1.1.2440.030769
ORF1ab/nsp10134R134RcgCcgT22B.1.1.3060.000877
ORF1ab/nsp10134R134RcgCcgT22B.1.1.3540.008772
ORF1ab/nsp10134R134RcgCcgT22B.1.1.700.000682
ORF1ab/nsp10134R134RcgCcgT22B.1.177.40.000422
ORF1ab/nsp10134R134RcgCcgT22B.1.177.430.002954
ORF1ab/nsp10134R134RcgCcgT22B.1.177.730.001133
ORF1ab/nsp10134R134RcgCcgT22B.1.2340.000264
ORF1ab/nsp10134R134RcgCcgT22B.1.2430.000139
ORF1ab/nsp10134R134RcgCcgT22B.1.258.20.009009
ORF1ab/nsp10134R134RcgCcgT22B.1.3110.000549
ORF1ab/nsp10134R134RcgCcgT22B.1.3670.001585
ORF1ab/nsp10134R134RcgCcgT22B.1.4040.002604
ORF1ab/nsp10134R134RcgCcgT22B.1.4990.002101
ORF1ab/nsp10134R134RcgCcgT22P.1.150.000465
ORF1ab/nsp10134R134RcgCcgT22P.1.70.000639
ORF1ab/nsp10134R134RcgCcgA11AY.1110.000183
ORF1ab/nsp10134R134RcgCcgT11AY.1140.000231
ORF1ab/nsp10134R134RcgCcgT11AY.116.10.000311
ORF1ab/nsp10134R134RcgCcgT11AY.160.00038
ORF1ab/nsp10134R134RcgCcgT11AY.170.008197
ORF1ab/nsp10134R134RcgCcgT11AY.280.00189
ORF1ab/nsp10134R134RcgCcgT11AY.4.2.10.000149
ORF1ab/nsp10134R134RcgCcgT11AY.4.30.000842
ORF1ab/nsp10134R134RcgCcgT11AY.4.40.000409
ORF1ab/nsp10134R134RcgCcgA11AY.4.50.000107
ORF1ab/nsp10134R134RcgCcgT11AY.460.000104
ORF1ab/nsp10134R134RcgCcgT11AY.5.30.000337
ORF1ab/nsp10134R134RcgCcgT11AY.540.000095
ORF1ab/nsp10134R134RcgCcgT11AY.610.000105
ORF1ab/nsp10134R134RcgCcgT11AY.630.000387
ORF1ab/nsp10134R134RcgCcgA11AY.730.000665
ORF1ab/nsp10134R134RcgCcgT11AY.770.001127
ORF1ab/nsp10134R134RcgCcgT11AY.790.001211
ORF1ab/nsp10134R134RcgCcgT11AY.840.000437
ORF1ab/nsp10134R134RcgCcgT11AY.9.20.000037
ORF1ab/nsp10134R134RcgCcgT11AY.920.000287
ORF1ab/nsp10134R134RcgCcgT11AY.950.000761
ORF1ab/nsp10134R134RcgCcgT11AY.980.000079
ORF1ab/nsp10134R134RcgCcgT11B.1.1.1700.001247
ORF1ab/nsp10134R134RcgCcgT11B.1.1.1890.001513
ORF1ab/nsp10134R134RcgCcgT11B.1.1.2140.000055
ORF1ab/nsp10134R134RcgCcgT11B.1.1.2200.001859
ORF1ab/nsp10134R134RcgCcgT11B.1.1.2220.000204
ORF1ab/nsp10134R134RcgCcgT11B.1.1.2400.004695
ORF1ab/nsp10134R134RcgCcgT11B.1.1.2580.003257
ORF1ab/nsp10134R134RcgCcgT11B.1.1.2630.001558
ORF1ab/nsp10134R134RcgCcgT11B.1.1.2860.002899
ORF1ab/nsp10134R134RcgCcgT11B.1.1.2940.001266
ORF1ab/nsp10134R134RcgCcgT11B.1.1.2970.002237
ORF1ab/nsp10134R134RcgCcgT11B.1.1.3280.016949
ORF1ab/nsp10134R134RcgCcgT11B.1.1.4640.001473
ORF1ab/nsp10134R134RcgCcgT11B.1.1.5170.006803
ORF1ab/nsp10134R134RcgCcgT11B.1.1.5280.004808
ORF1ab/nsp10134R134RcgCcgT11B.1.1110.001175
ORF1ab/nsp10134R134RcgCcgA11B.1.160.120.00641
ORF1ab/nsp10134R134RcgCcgT11B.1.1620.005025
ORF1ab/nsp10134R134RcgCcgT11B.1.177.210.000076
ORF1ab/nsp10134R134RcgCcgT11B.1.177.400.005155
ORF1ab/nsp10134R134RcgCcgT11B.1.177.720.00339
ORF1ab/nsp10134R134RcgCcgT11B.1.177.770.000726
ORF1ab/nsp10134R134RcgCcgT11B.1.177.810.000189
ORF1ab/nsp10134R134RcgCcgT11B.1.2370.004975
ORF1ab/nsp10134R134RcgCcgT11B.1.2390.001221
ORF1ab/nsp10134R134RcgCcgT11B.1.2790.000514
ORF1ab/nsp10134R134RcgCcgT11B.1.3060.005714
ORF1ab/nsp10134R134RcgCcgT11B.1.36.100.004785
ORF1ab/nsp10134R134RcgCcgT11B.1.36.180.00042
ORF1ab/nsp10134R134RcgCcgT11B.1.36.290.000517
ORF1ab/nsp10134R134RcgCcgT11B.1.36.350.002604
ORF1ab/nsp10134R134RcgCcgT11B.1.36.90.003215
ORF1ab/nsp10134R134RcgCcgT11B.1.3750.00082
ORF1ab/nsp10134R134RcgCcgT11B.1.3990.001934
ORF1ab/nsp10134R134RcgCcgT11B.1.416.10.001563
ORF1ab/nsp10134R134RcgCcgT11B.1.4220.000812
ORF1ab/nsp10134R134RcgCcgT11B.1.4330.003195
ORF1ab/nsp10134R134RcgCcgT11B.1.5640.000426
ORF1ab/nsp10134R134RcgCcgT11B.1.5680.001111
ORF1ab/nsp10134R134RcgCcgT11B.1.5750.000303
ORF1ab/nsp10134R134RcgCcgT11B.1.621.10.000506
ORF1ab/nsp10134R134RcgCcgT11B.1.780.008547
ORF1ab/nsp10134R134RcgCcgT11B.1.940.027027
ORF1ab/nsp10134R134RcgCcgT11C.360.000911
ORF1ab/nsp10134R134RcgCcgT11P.1.160.000374
ORF1ab/nsp10134R134RcgCcgT11P.20.000187
ORF1ab/nsp10134R134RcgCcgT11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.