CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp10 : Mut = P84S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1084P84SP4337SnonsynCcaTca25932593113274-13276

Details of the mutation P84S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1084P84SCcaTca25932593All0.000496
ORF1ab/nsp1084P84SCcaTca449449AY.40.000699
ORF1ab/nsp1084P84SCcaTca264264B.1.1.70.000236
ORF1ab/nsp1084P84SCcaTca168168AY.250.00101
ORF1ab/nsp1084P84SCcaTca163163AY.370.051517
ORF1ab/nsp1084P84SCcaTca126126AY.440.000767
ORF1ab/nsp1084P84SCcaTca100100B.1.5900.454545
ORF1ab/nsp1084P84SCcaTca9494B.1.5911
ORF1ab/nsp1084P84SCcaTca8585B.1.617.20.00032
ORF1ab/nsp1084P84SCcaTca7676AY.30.000756
ORF1ab/nsp1084P84SCcaTca7676AY.430.000337
ORF1ab/nsp1084P84SCcaTca6666B.1.6090.03164
ORF1ab/nsp1084P84SCcaTca5252AY.1030.000323
ORF1ab/nsp1084P84SCcaTca4848B.1.20.000423
ORF1ab/nsp1084P84SCcaTca4545AY.99.20.004147
ORF1ab/nsp1084P84SCcaTca3939B.1.1600.001216
ORF1ab/nsp1084P84SCcaTca3838B.1.10.000689
ORF1ab/nsp1084P84SCcaTca3636AY.260.001019
ORF1ab/nsp1084P84SCcaTca3636B.10.00033
ORF1ab/nsp1084P84SCcaTca3535B.1.2580.002329
ORF1ab/nsp1084P84SCcaTca3434B.1.1770.000448
ORF1ab/nsp1084P84SCcaTca3333P.10.00052
ORF1ab/nsp1084P84SCcaTca3131AY.750.001737
ORF1ab/nsp1084P84SCcaTca3131AY.980.002449
ORF1ab/nsp1084P84SCcaTca2525B.1.5510.032258
ORF1ab/nsp1084P84SCcaTca1717AE.80.008313
ORF1ab/nsp1084P84SCcaTca1616B.1.360.002334
ORF1ab/nsp1084P84SCcaTca1414AY.390.000346
ORF1ab/nsp1084P84SCcaTca1313AY.1110.002381
ORF1ab/nsp1084P84SCcaTca1313AY.4.10.009587
ORF1ab/nsp1084P84SCcaTca1313B.1.1.1530.014239
ORF1ab/nsp1084P84SCcaTca1212AY.50.000248
ORF1ab/nsp1084P84SCcaTca1010B.1.1.1760.004394
ORF1ab/nsp1084P84SCcaTca1010B.1.1.5190.000397
ORF1ab/nsp1084P84SCcaTca1010B.1.5950.00261
ORF1ab/nsp1084P84SCcaTca99AY.1000.000414
ORF1ab/nsp1084P84SCcaTca99B.1.5090.007792
ORF1ab/nsp1084P84SCcaTca99D.20.000675
ORF1ab/nsp1084P84SCcaTca88AY.98.10.000387
ORF1ab/nsp1084P84SCcaTca77AY.1020.000186
ORF1ab/nsp1084P84SCcaTca77AY.39.10.000277
ORF1ab/nsp1084P84SCcaTca77B.1.1.2140.000388
ORF1ab/nsp1084P84SCcaTca77B.1.4270.000353
ORF1ab/nsp1084P84SCcaTca77B.1.4290.000165
ORF1ab/nsp1084P84SCcaTca66AY.230.000418
ORF1ab/nsp1084P84SCcaTca66AY.3.10.000512
ORF1ab/nsp1084P84SCcaTca66AY.4.20.00013
ORF1ab/nsp1084P84SCcaTca66AY.90.000406
ORF1ab/nsp1084P84SCcaTca55AY.1190.000177
ORF1ab/nsp1084P84SCcaTca55AY.200.000194
ORF1ab/nsp1084P84SCcaTca55AY.290.000079
ORF1ab/nsp1084P84SCcaTca55AY.840.002187
ORF1ab/nsp1084P84SCcaTca55B.1.2400.001078
ORF1ab/nsp1084P84SCcaTca55B.1.5960.000436
ORF1ab/nsp1084P84SCcaTca55N.50.008834
ORF1ab/nsp1084P84SCcaTca55Z.10.014451
ORF1ab/nsp1084P84SCcaTca44AY.1070.001864
ORF1ab/nsp1084P84SCcaTca44AY.1200.000149
ORF1ab/nsp1084P84SCcaTca44AY.450.000487
ORF1ab/nsp1084P84SCcaTca44B.1.1.2650.012618
ORF1ab/nsp1084P84SCcaTca44B.1.3510.000119
ORF1ab/nsp1084P84SCcaTca44B.1.617.10.000516
ORF1ab/nsp1084P84SCcaTca33A0.001161
ORF1ab/nsp1084P84SCcaTca33AY.120.000948
ORF1ab/nsp1084P84SCcaTca33AY.1210.000406
ORF1ab/nsp1084P84SCcaTca33AY.340.000291
ORF1ab/nsp1084P84SCcaTca33AY.9.20.00011
ORF1ab/nsp1084P84SCcaTca33AY.91.10.012195
ORF1ab/nsp1084P84SCcaTca33B.1.1.3170.001235
ORF1ab/nsp1084P84SCcaTca33B.1.177.810.000568
ORF1ab/nsp1084P84SCcaTca33B.1.2140.010989
ORF1ab/nsp1084P84SCcaTca33B.1.36.290.001552
ORF1ab/nsp1084P84SCcaTca33B.1.5260.000071
ORF1ab/nsp1084P84SCcaTca33B.1.6210.000266
ORF1ab/nsp1084P84SCcaTca33C.370.000348
ORF1ab/nsp1084P84SCcaTca33P.1.140.000143
ORF1ab/nsp1084P84SCcaTca33Q.30.000435
ORF1ab/nsp1084P84SCcaTca22AY.1170.000169
ORF1ab/nsp1084P84SCcaTca22AY.330.000134
ORF1ab/nsp1084P84SCcaTca22AY.350.000466
ORF1ab/nsp1084P84SCcaTca22AY.420.00008
ORF1ab/nsp1084P84SCcaTca22AY.460.000208
ORF1ab/nsp1084P84SCcaTca22AY.46.50.000397
ORF1ab/nsp1084P84SCcaTca22AY.46.60.000144
ORF1ab/nsp1084P84SCcaTca22AY.680.000547
ORF1ab/nsp1084P84SCcaTca22AY.740.000231
ORF1ab/nsp1084P84SCcaTca22AY.810.003984
ORF1ab/nsp1084P84SCcaTca22AY.9.10.000167
ORF1ab/nsp1084P84SCcaTca22B.1.1.2540.022472
ORF1ab/nsp1084P84SCcaTca22B.1.1.280.000622
ORF1ab/nsp1084P84SCcaTca22B.1.1.4110.029412
ORF1ab/nsp1084P84SCcaTca22B.1.177.210.000153
ORF1ab/nsp1084P84SCcaTca22B.1.177.40.000422
ORF1ab/nsp1084P84SCcaTca22B.1.2210.000142
ORF1ab/nsp1084P84SCcaTca22B.1.2430.000139
ORF1ab/nsp1084P84SCcaTca22B.1.4800.004975
ORF1ab/nsp1084P84SCcaTca22B.1.5240.002813
ORF1ab/nsp1084P84SCcaTca22B.1.5750.000607
ORF1ab/nsp1084P84SCcaTca22B.1.5770.001375
ORF1ab/nsp1084P84SCcaTca22B.1.6370.000146
ORF1ab/nsp1084P84SCcaTca22C.1.20.008511
ORF1ab/nsp1084P84SCcaTca22N.60.014184
ORF1ab/nsp1084P84SCcaTca22P.1.150.000465
ORF1ab/nsp1084P84SCcaTca22P.1.17.10.00175
ORF1ab/nsp1084P84SCcaTca11AD.20.000219
ORF1ab/nsp1084P84SCcaTca11AU.10.001266
ORF1ab/nsp1084P84SCcaTca11AY.100.00053
ORF1ab/nsp1084P84SCcaTca11AY.1050.000643
ORF1ab/nsp1084P84SCcaTca11AY.1130.000142
ORF1ab/nsp1084P84SCcaTca11AY.1140.000231
ORF1ab/nsp1084P84SCcaTca11AY.1160.000287
ORF1ab/nsp1084P84SCcaTca11AY.130.000161
ORF1ab/nsp1084P84SCcaTca11AY.140.000088
ORF1ab/nsp1084P84SCcaTca11AY.190.00114
ORF1ab/nsp1084P84SCcaTca11AY.220.002092
ORF1ab/nsp1084P84SCcaTca11AY.39.1.10.000725
ORF1ab/nsp1084P84SCcaTca11AY.410.000294
ORF1ab/nsp1084P84SCcaTca11AY.470.000031
ORF1ab/nsp1084P84SCcaTca11AY.5.40.000277
ORF1ab/nsp1084P84SCcaTca11AY.530.000288
ORF1ab/nsp1084P84SCcaTca11AY.540.000095
ORF1ab/nsp1084P84SCcaTca11AY.620.000436
ORF1ab/nsp1084P84SCcaTca11AY.640.000595
ORF1ab/nsp1084P84SCcaTca11AY.650.000533
ORF1ab/nsp1084P84SCcaTca11AY.710.000475
ORF1ab/nsp1084P84SCcaTca11AY.950.000761
ORF1ab/nsp1084P84SCcaTca11AZ.10.000867
ORF1ab/nsp1084P84SCcaTca11B0.000128
ORF1ab/nsp1084P84SCcaTca11B.1.1.1410.002012
ORF1ab/nsp1084P84SCcaTca11B.1.1.2070.001182
ORF1ab/nsp1084P84SCcaTca11B.1.1.2220.000204
ORF1ab/nsp1084P84SCcaTca11B.1.1.2280.003049
ORF1ab/nsp1084P84SCcaTca11B.1.1.2310.003096
ORF1ab/nsp1084P84SCcaTca11B.1.1.2980.000862
ORF1ab/nsp1084P84SCcaTca11B.1.1.3110.000358
ORF1ab/nsp1084P84SCcaTca11B.1.1.3180.000302
ORF1ab/nsp1084P84SCcaTca11B.1.1.3250.025641
ORF1ab/nsp1084P84SCcaTca11B.1.1.3880.045455
ORF1ab/nsp1084P84SCcaTca11B.1.1.4280.009434
ORF1ab/nsp1084P84SCcaTca11B.1.160.230.004831
ORF1ab/nsp1084P84SCcaTca11B.1.160.290.004219
ORF1ab/nsp1084P84SCcaTca11B.1.1640.014925
ORF1ab/nsp1084P84SCcaTca11B.1.177.560.000668
ORF1ab/nsp1084P84SCcaTca11B.1.177.570.000281
ORF1ab/nsp1084P84SCcaTca11B.1.177.70.000165
ORF1ab/nsp1084P84SCcaTca11B.1.177.750.001041
ORF1ab/nsp1084P84SCcaTca11B.1.2410.000812
ORF1ab/nsp1084P84SCcaTca11B.1.258.170.000104
ORF1ab/nsp1084P84SCcaTca11B.1.3200.001245
ORF1ab/nsp1084P84SCcaTca11B.1.3290.000608
ORF1ab/nsp1084P84SCcaTca11B.1.3960.000706
ORF1ab/nsp1084P84SCcaTca11B.1.4080.00369
ORF1ab/nsp1084P84SCcaTca11B.1.438.10.000107
ORF1ab/nsp1084P84SCcaTca11B.1.5030.002488
ORF1ab/nsp1084P84SCcaTca11B.1.5170.000427
ORF1ab/nsp1084P84SCcaTca11B.1.5250.000113
ORF1ab/nsp1084P84SCcaTca11B.1.5410.004425
ORF1ab/nsp1084P84SCcaTca11B.1.5760.000907
ORF1ab/nsp1084P84SCcaTca11B.1.5880.00091
ORF1ab/nsp1084P84SCcaTca11B.6.60.000889
ORF1ab/nsp1084P84SCcaTca11P.20.000187
ORF1ab/nsp1084P84SCcaTca11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.