CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp10 : Mut = P59P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp10	59	P59P	P4312P	syn	ccG	ccT	10138	6819	0.672618	13199-13201
ORF1ab/nsp10	59	P59P	P4312P	syn	ccG	ccA	10138	3310	0.326494	13199-13201
ORF1ab/nsp10	59	P59P	P4312P	syn	ccG	ccC	10138	9	0.000887749	13199-13201

Details of the mutation P59P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp10	59	P59P	ccG	ccT	6819	10138	All	0.001304
ORF1ab/nsp10	59	P59P	ccG	ccA	3310	10138	All	0.000633
ORF1ab/nsp10	59	P59P	ccG	ccC	9	10138	All	0.000002
ORF1ab/nsp10	59	P59P	ccG	ccT	2595	2638	B.1.2	0.02285
ORF1ab/nsp10	59	P59P	ccG	ccA	43	2638	B.1.2	0.000379
ORF1ab/nsp10	59	P59P	ccG	ccA	1319	1619	B.1.1.7	0.001181
ORF1ab/nsp10	59	P59P	ccG	ccT	299	1619	B.1.1.7	0.000268
ORF1ab/nsp10	59	P59P	ccG	ccC	1	1619	B.1.1.7	0.000001
ORF1ab/nsp10	59	P59P	ccG	ccT	782	1151	AY.4	0.001217
ORF1ab/nsp10	59	P59P	ccG	ccA	369	1151	AY.4	0.000574
ORF1ab/nsp10	59	P59P	ccG	ccA	388	633	AY.44	0.002362
ORF1ab/nsp10	59	P59P	ccG	ccT	244	633	AY.44	0.001485
ORF1ab/nsp10	59	P59P	ccG	ccC	1	633	AY.44	0.000006
ORF1ab/nsp10	59	P59P	ccG	ccT	452	619	B.1.617.2	0.001702
ORF1ab/nsp10	59	P59P	ccG	ccA	164	619	B.1.617.2	0.000618
ORF1ab/nsp10	59	P59P	ccG	ccC	3	619	B.1.617.2	0.000011
ORF1ab/nsp10	59	P59P	ccG	ccT	357	357	B.1.448	0.937008
ORF1ab/nsp10	59	P59P	ccG	ccT	224	296	P.1	0.003529
ORF1ab/nsp10	59	P59P	ccG	ccA	72	296	P.1	0.001134
ORF1ab/nsp10	59	P59P	ccG	ccT	294	295	AY.20	0.011426
ORF1ab/nsp10	59	P59P	ccG	ccA	1	295	AY.20	0.000039
ORF1ab/nsp10	59	P59P	ccG	ccT	112	159	B.1	0.001026
ORF1ab/nsp10	59	P59P	ccG	ccA	46	159	B.1	0.000421
ORF1ab/nsp10	59	P59P	ccG	ccC	1	159	B.1	0.000009
ORF1ab/nsp10	59	P59P	ccG	ccT	122	155	AY.100	0.005613
ORF1ab/nsp10	59	P59P	ccG	ccA	33	155	AY.100	0.001518
ORF1ab/nsp10	59	P59P	ccG	ccT	113	114	AY.4.2	0.002451
ORF1ab/nsp10	59	P59P	ccG	ccA	1	114	AY.4.2	0.000022
ORF1ab/nsp10	59	P59P	ccG	ccT	95	113	AY.43	0.000421
ORF1ab/nsp10	59	P59P	ccG	ccA	18	113	AY.43	0.00008
ORF1ab/nsp10	59	P59P	ccG	ccA	65	110	AY.103	0.000404
ORF1ab/nsp10	59	P59P	ccG	ccT	45	110	AY.103	0.000279
ORF1ab/nsp10	59	P59P	ccG	ccT	64	108	AY.25	0.000385
ORF1ab/nsp10	59	P59P	ccG	ccA	44	108	AY.25	0.000265
ORF1ab/nsp10	59	P59P	ccG	ccT	87	89	AY.4.2.1	0.012962
ORF1ab/nsp10	59	P59P	ccG	ccA	2	89	AY.4.2.1	0.000298
ORF1ab/nsp10	59	P59P	ccG	ccA	88	88	C.11	0.93617
ORF1ab/nsp10	59	P59P	ccG	ccT	57	77	B.1.243	0.003966
ORF1ab/nsp10	59	P59P	ccG	ccA	20	77	B.1.243	0.001392
ORF1ab/nsp10	59	P59P	ccG	ccT	43	64	AY.39	0.001063
ORF1ab/nsp10	59	P59P	ccG	ccA	21	64	AY.39	0.000519
ORF1ab/nsp10	59	P59P	ccG	ccA	58	60	B.1.1.284	0.006229
ORF1ab/nsp10	59	P59P	ccG	ccT	2	60	B.1.1.284	0.000215
ORF1ab/nsp10	59	P59P	ccG	ccT	60	60	B.1.36.8	0.06
ORF1ab/nsp10	59	P59P	ccG	ccT	43	58	AY.102	0.00114
ORF1ab/nsp10	59	P59P	ccG	ccA	15	58	AY.102	0.000398
ORF1ab/nsp10	59	P59P	ccG	ccT	58	58	P.1.1	0.018424
ORF1ab/nsp10	59	P59P	ccG	ccA	56	56	B.1.265	0.071156
ORF1ab/nsp10	59	P59P	ccG	ccA	35	41	AY.3	0.000348
ORF1ab/nsp10	59	P59P	ccG	ccT	6	41	AY.3	0.00006
ORF1ab/nsp10	59	P59P	ccG	ccA	25	38	AY.39.1	0.00099
ORF1ab/nsp10	59	P59P	ccG	ccT	13	38	AY.39.1	0.000515
ORF1ab/nsp10	59	P59P	ccG	ccT	23	33	AY.117	0.001944
ORF1ab/nsp10	59	P59P	ccG	ccA	10	33	AY.117	0.000845
ORF1ab/nsp10	59	P59P	ccG	ccA	22	32	B.1.1	0.000399
ORF1ab/nsp10	59	P59P	ccG	ccT	10	32	B.1.1	0.000181
ORF1ab/nsp10	59	P59P	ccG	ccA	30	31	B.1.499	0.031513
ORF1ab/nsp10	59	P59P	ccG	ccT	1	31	B.1.499	0.00105
ORF1ab/nsp10	59	P59P	ccG	ccA	22	30	B.1.429	0.000518
ORF1ab/nsp10	59	P59P	ccG	ccT	8	30	B.1.429	0.000188
ORF1ab/nsp10	59	P59P	ccG	ccT	17	28	B.1.160	0.00053
ORF1ab/nsp10	59	P59P	ccG	ccA	11	28	B.1.160	0.000343
ORF1ab/nsp10	59	P59P	ccG	ccT	25	27	B.1.526	0.000588
ORF1ab/nsp10	59	P59P	ccG	ccA	2	27	B.1.526	0.000047
ORF1ab/nsp10	59	P59P	ccG	ccA	23	24	AY.118	0.001441
ORF1ab/nsp10	59	P59P	ccG	ccT	1	24	AY.118	0.000063
ORF1ab/nsp10	59	P59P	ccG	ccA	14	22	AY.42	0.000563
ORF1ab/nsp10	59	P59P	ccG	ccT	8	22	AY.42	0.000322
ORF1ab/nsp10	59	P59P	ccG	ccT	17	20	AY.23	0.001186
ORF1ab/nsp10	59	P59P	ccG	ccA	3	20	AY.23	0.000209
ORF1ab/nsp10	59	P59P	ccG	ccA	17	20	AY.26	0.000481
ORF1ab/nsp10	59	P59P	ccG	ccT	3	20	AY.26	0.000085
ORF1ab/nsp10	59	P59P	ccG	ccT	20	20	B.1.214.2	0.01199
ORF1ab/nsp10	59	P59P	ccG	ccT	20	20	B.1.427	0.00101
ORF1ab/nsp10	59	P59P	ccG	ccT	20	20	B.1.596	0.001743
ORF1ab/nsp10	59	P59P	ccG	ccT	19	19	B.1.619.1	0.012187
ORF1ab/nsp10	59	P59P	ccG	ccA	17	18	AY.36	0.00252
ORF1ab/nsp10	59	P59P	ccG	ccT	1	18	AY.36	0.000148
ORF1ab/nsp10	59	P59P	ccG	ccT	10	17	B.1.1.519	0.000397
ORF1ab/nsp10	59	P59P	ccG	ccA	7	17	B.1.1.519	0.000278
ORF1ab/nsp10	59	P59P	ccG	ccA	15	16	AY.98.1	0.000726
ORF1ab/nsp10	59	P59P	ccG	ccT	1	16	AY.98.1	0.000048
ORF1ab/nsp10	59	P59P	ccG	ccT	15	16	P.2	0.0028
ORF1ab/nsp10	59	P59P	ccG	ccA	1	16	P.2	0.000187
ORF1ab/nsp10	59	P59P	ccG	ccT	13	15	B.1.351	0.000386
ORF1ab/nsp10	59	P59P	ccG	ccA	2	15	B.1.351	0.000059
ORF1ab/nsp10	59	P59P	ccG	ccT	14	14	B.1.1.70	0.004775
ORF1ab/nsp10	59	P59P	ccG	ccT	8	14	P.1.14	0.000382
ORF1ab/nsp10	59	P59P	ccG	ccA	6	14	P.1.14	0.000287
ORF1ab/nsp10	59	P59P	ccG	ccT	14	14	P.1.7	0.00447
ORF1ab/nsp10	59	P59P	ccG	ccA	11	13	AY.116	0.003155
ORF1ab/nsp10	59	P59P	ccG	ccT	2	13	AY.116	0.000574
ORF1ab/nsp10	59	P59P	ccG	ccT	13	13	AY.49	0.041534
ORF1ab/nsp10	59	P59P	ccG	ccA	13	13	C.35	0.010062
ORF1ab/nsp10	59	P59P	ccG	ccT	11	12	AY.29	0.000174
ORF1ab/nsp10	59	P59P	ccG	ccA	1	12	AY.29	0.000016
ORF1ab/nsp10	59	P59P	ccG	ccA	12	12	B.1.1.416	0.01086
ORF1ab/nsp10	59	P59P	ccG	ccT	8	11	AY.120	0.000297
ORF1ab/nsp10	59	P59P	ccG	ccA	3	11	AY.120	0.000112
ORF1ab/nsp10	59	P59P	ccG	ccT	10	10	AY.111	0.001832
ORF1ab/nsp10	59	P59P	ccG	ccT	9	10	AY.14	0.000792
ORF1ab/nsp10	59	P59P	ccG	ccA	1	10	AY.14	0.000088
ORF1ab/nsp10	59	P59P	ccG	ccT	8	10	AY.33	0.000534
ORF1ab/nsp10	59	P59P	ccG	ccA	2	10	AY.33	0.000134
ORF1ab/nsp10	59	P59P	ccG	ccT	8	10	AY.45	0.000973
ORF1ab/nsp10	59	P59P	ccG	ccA	2	10	AY.45	0.000243
ORF1ab/nsp10	59	P59P	ccG	ccT	9	9	AY.23.1	0.003756
ORF1ab/nsp10	59	P59P	ccG	ccT	5	9	AY.5	0.000103
ORF1ab/nsp10	59	P59P	ccG	ccA	4	9	AY.5	0.000083
ORF1ab/nsp10	59	P59P	ccG	ccA	9	9	B.1.1.419	0.066667
ORF1ab/nsp10	59	P59P	ccG	ccT	5	9	B.1.177	0.000066
ORF1ab/nsp10	59	P59P	ccG	ccA	4	9	B.1.177	0.000053
ORF1ab/nsp10	59	P59P	ccG	ccT	9	9	B.1.575	0.002731
ORF1ab/nsp10	59	P59P	ccG	ccT	9	9	B.1.595	0.002349
ORF1ab/nsp10	59	P59P	ccG	ccT	7	8	AY.78	0.010786
ORF1ab/nsp10	59	P59P	ccG	ccA	1	8	AY.78	0.001541
ORF1ab/nsp10	59	P59P	ccG	ccT	7	8	AY.92	0.002011
ORF1ab/nsp10	59	P59P	ccG	ccA	1	8	AY.92	0.000287
ORF1ab/nsp10	59	P59P	ccG	ccT	7	8	B.1.1.306	0.003069
ORF1ab/nsp10	59	P59P	ccG	ccA	1	8	B.1.1.306	0.000438
ORF1ab/nsp10	59	P59P	ccG	ccT	8	8	B.1.621	0.000708
ORF1ab/nsp10	59	P59P	ccG	ccT	8	8	B.1.637	0.000585
ORF1ab/nsp10	59	P59P	ccG	ccT	8	8	Q.8	0.001319
ORF1ab/nsp10	59	P59P	ccG	ccT	7	7	AY.108	0.007718
ORF1ab/nsp10	59	P59P	ccG	ccT	4	7	AY.119	0.000141
ORF1ab/nsp10	59	P59P	ccG	ccA	3	7	AY.119	0.000106
ORF1ab/nsp10	59	P59P	ccG	ccA	4	7	AY.6	0.000165
ORF1ab/nsp10	59	P59P	ccG	ccT	3	7	AY.6	0.000123
ORF1ab/nsp10	59	P59P	ccG	ccA	7	7	B.1.160.32	0.030043
ORF1ab/nsp10	59	P59P	ccG	ccA	7	7	B.1.258.2	0.031532
ORF1ab/nsp10	59	P59P	ccG	ccT	4	7	B.1.609	0.001918
ORF1ab/nsp10	59	P59P	ccG	ccA	3	7	B.1.609	0.001438
ORF1ab/nsp10	59	P59P	ccG	ccA	6	7	B.1.617.1	0.000774
ORF1ab/nsp10	59	P59P	ccG	ccT	1	7	B.1.617.1	0.000129
ORF1ab/nsp10	59	P59P	ccG	ccT	6	6	AY.41	0.001764
ORF1ab/nsp10	59	P59P	ccG	ccT	5	6	AY.46	0.00052
ORF1ab/nsp10	59	P59P	ccG	ccC	1	6	AY.46	0.000104
ORF1ab/nsp10	59	P59P	ccG	ccT	6	6	AY.62	0.002614
ORF1ab/nsp10	59	P59P	ccG	ccT	4	6	AY.88	0.003537
ORF1ab/nsp10	59	P59P	ccG	ccA	2	6	AY.88	0.001768
ORF1ab/nsp10	59	P59P	ccG	ccA	6	6	B.1.1.37	0.001157
ORF1ab/nsp10	59	P59P	ccG	ccA	5	6	B.1.234	0.00066
ORF1ab/nsp10	59	P59P	ccG	ccT	1	6	B.1.234	0.000132
ORF1ab/nsp10	59	P59P	ccG	ccA	6	6	B.1.384	0.6
ORF1ab/nsp10	59	P59P	ccG	ccT	3	6	B.1.525	0.000339
ORF1ab/nsp10	59	P59P	ccG	ccA	3	6	B.1.525	0.000339
ORF1ab/nsp10	59	P59P	ccG	ccT	5	5	AY.106	0.001674
ORF1ab/nsp10	59	P59P	ccG	ccA	3	5	AY.2	0.001068
ORF1ab/nsp10	59	P59P	ccG	ccT	2	5	AY.2	0.000712
ORF1ab/nsp10	59	P59P	ccG	ccA	3	5	AY.61	0.000314
ORF1ab/nsp10	59	P59P	ccG	ccT	2	5	AY.61	0.00021
ORF1ab/nsp10	59	P59P	ccG	ccA	4	5	AY.79	0.004843
ORF1ab/nsp10	59	P59P	ccG	ccC	1	5	AY.79	0.001211
ORF1ab/nsp10	59	P59P	ccG	ccT	4	5	AY.98	0.000316
ORF1ab/nsp10	59	P59P	ccG	ccA	1	5	AY.98	0.000079
ORF1ab/nsp10	59	P59P	ccG	ccT	5	5	B.1.1.50	0.003394
ORF1ab/nsp10	59	P59P	ccG	ccA	4	5	B.1.311	0.001098
ORF1ab/nsp10	59	P59P	ccG	ccC	1	5	B.1.311	0.000275
ORF1ab/nsp10	59	P59P	ccG	ccT	5	5	B.1.398	0.014881
ORF1ab/nsp10	59	P59P	ccG	ccA	3	4	AY.27	0.000194
ORF1ab/nsp10	59	P59P	ccG	ccT	1	4	AY.27	0.000065
ORF1ab/nsp10	59	P59P	ccG	ccA	4	4	AY.32	0.00213
ORF1ab/nsp10	59	P59P	ccG	ccT	3	4	AY.34.1	0.00153
ORF1ab/nsp10	59	P59P	ccG	ccA	1	4	AY.34.1	0.00051
ORF1ab/nsp10	59	P59P	ccG	ccT	3	4	AY.46.4	0.000494
ORF1ab/nsp10	59	P59P	ccG	ccA	1	4	AY.46.4	0.000165
ORF1ab/nsp10	59	P59P	ccG	ccA	3	4	AY.54	0.000286
ORF1ab/nsp10	59	P59P	ccG	ccT	1	4	AY.54	0.000095
ORF1ab/nsp10	59	P59P	ccG	ccT	4	4	AY.58	0.00363
ORF1ab/nsp10	59	P59P	ccG	ccA	4	4	B.1.1.448	0.00813
ORF1ab/nsp10	59	P59P	ccG	ccA	4	4	B.1.177.11	0.006791
ORF1ab/nsp10	59	P59P	ccG	ccT	4	4	B.1.177.28	0.02963
ORF1ab/nsp10	59	P59P	ccG	ccT	2	4	B.1.36	0.000292
ORF1ab/nsp10	59	P59P	ccG	ccA	2	4	B.1.36	0.000292
ORF1ab/nsp10	59	P59P	ccG	ccT	4	4	B.1.36.31	0.007005
ORF1ab/nsp10	59	P59P	ccG	ccT	4	4	B.1.367	0.00317
ORF1ab/nsp10	59	P59P	ccG	ccT	4	4	B.1.369	0.001141
ORF1ab/nsp10	59	P59P	ccG	ccT	4	4	C.36.3	0.002269
ORF1ab/nsp10	59	P59P	ccG	ccA	2	3	AY.121	0.000271
ORF1ab/nsp10	59	P59P	ccG	ccT	1	3	AY.121	0.000135
ORF1ab/nsp10	59	P59P	ccG	ccA	2	3	AY.24	0.000862
ORF1ab/nsp10	59	P59P	ccG	ccT	1	3	AY.24	0.000431
ORF1ab/nsp10	59	P59P	ccG	ccT	3	3	AY.46.6	0.000217
ORF1ab/nsp10	59	P59P	ccG	ccT	2	3	AY.5.3	0.000675
ORF1ab/nsp10	59	P59P	ccG	ccA	1	3	AY.5.3	0.000337
ORF1ab/nsp10	59	P59P	ccG	ccT	3	3	AY.53	0.000863
ORF1ab/nsp10	59	P59P	ccG	ccT	3	3	AY.7.2	0.001678
ORF1ab/nsp10	59	P59P	ccG	ccA	2	3	AY.74	0.000231
ORF1ab/nsp10	59	P59P	ccG	ccT	1	3	AY.74	0.000116
ORF1ab/nsp10	59	P59P	ccG	ccT	2	3	AY.75	0.000112
ORF1ab/nsp10	59	P59P	ccG	ccA	1	3	AY.75	0.000056
ORF1ab/nsp10	59	P59P	ccG	ccT	3	3	AY.75.1	0.000541
ORF1ab/nsp10	59	P59P	ccG	ccA	3	3	AY.9.1	0.000251
ORF1ab/nsp10	59	P59P	ccG	ccT	3	3	B.1.1.189	0.004539
ORF1ab/nsp10	59	P59P	ccG	ccT	3	3	B.1.1.25	0.001706
ORF1ab/nsp10	59	P59P	ccG	ccT	2	3	B.1.177.60	0.000437
ORF1ab/nsp10	59	P59P	ccG	ccA	1	3	B.1.177.60	0.000218
ORF1ab/nsp10	59	P59P	ccG	ccA	3	3	B.1.177.75	0.003122
ORF1ab/nsp10	59	P59P	ccG	ccT	3	3	B.1.240	0.000647
ORF1ab/nsp10	59	P59P	ccG	ccA	2	3	B.1.258	0.000133
ORF1ab/nsp10	59	P59P	ccG	ccT	1	3	B.1.258	0.000067
ORF1ab/nsp10	59	P59P	ccG	ccT	3	3	B.1.315	0.018182
ORF1ab/nsp10	59	P59P	ccG	ccA	3	3	B.1.561	0.001191
ORF1ab/nsp10	59	P59P	ccG	ccT	3	3	B.1.619	0.002613
ORF1ab/nsp10	59	P59P	ccG	ccT	3	3	D.2	0.000225
ORF1ab/nsp10	59	P59P	ccG	ccA	2	3	Q.1	0.000253
ORF1ab/nsp10	59	P59P	ccG	ccT	1	3	Q.1	0.000126
ORF1ab/nsp10	59	P59P	ccG	ccA	2	2	A	0.000774
ORF1ab/nsp10	59	P59P	ccG	ccT	1	2	AY.113	0.000142
ORF1ab/nsp10	59	P59P	ccG	ccA	1	2	AY.113	0.000142
ORF1ab/nsp10	59	P59P	ccG	ccT	2	2	AY.120.1	0.000642
ORF1ab/nsp10	59	P59P	ccG	ccT	2	2	AY.13	0.000322
ORF1ab/nsp10	59	P59P	ccG	ccA	1	2	AY.34	0.000097
ORF1ab/nsp10	59	P59P	ccG	ccT	1	2	AY.34	0.000097
ORF1ab/nsp10	59	P59P	ccG	ccA	2	2	AY.35	0.000466
ORF1ab/nsp10	59	P59P	ccG	ccA	1	2	AY.4.4	0.000409
ORF1ab/nsp10	59	P59P	ccG	ccT	1	2	AY.4.4	0.000409
ORF1ab/nsp10	59	P59P	ccG	ccT	2	2	AY.46.2	0.001271
ORF1ab/nsp10	59	P59P	ccG	ccT	2	2	AY.55	0.001835
ORF1ab/nsp10	59	P59P	ccG	ccT	2	2	AY.73	0.001331
ORF1ab/nsp10	59	P59P	ccG	ccT	2	2	AY.84	0.000875
ORF1ab/nsp10	59	P59P	ccG	ccT	2	2	AY.95	0.001522
ORF1ab/nsp10	59	P59P	ccG	ccT	2	2	AY.99.2	0.000184
ORF1ab/nsp10	59	P59P	ccG	ccA	2	2	B.1.1.201	0.04878
ORF1ab/nsp10	59	P59P	ccG	ccT	1	2	B.1.1.214	0.000055
ORF1ab/nsp10	59	P59P	ccG	ccA	1	2	B.1.1.214	0.000055
ORF1ab/nsp10	59	P59P	ccG	ccT	2	2	B.1.1.279	0.002242
ORF1ab/nsp10	59	P59P	ccG	ccT	1	2	B.1.1.28	0.000311
ORF1ab/nsp10	59	P59P	ccG	ccA	1	2	B.1.1.28	0.000311
ORF1ab/nsp10	59	P59P	ccG	ccT	2	2	B.1.1.348	0.001592
ORF1ab/nsp10	59	P59P	ccG	ccT	1	2	B.1.1.526	0.003546
ORF1ab/nsp10	59	P59P	ccG	ccA	1	2	B.1.1.526	0.003546
ORF1ab/nsp10	59	P59P	ccG	ccT	2	2	B.1.199	0.008264
ORF1ab/nsp10	59	P59P	ccG	ccT	2	2	B.1.221	0.000142
ORF1ab/nsp10	59	P59P	ccG	ccT	1	2	B.1.258.17	0.000104
ORF1ab/nsp10	59	P59P	ccG	ccA	1	2	B.1.258.17	0.000104
ORF1ab/nsp10	59	P59P	ccG	ccT	2	2	B.1.351.3	0.001753
ORF1ab/nsp10	59	P59P	ccG	ccT	2	2	B.1.397	0.009709
ORF1ab/nsp10	59	P59P	ccG	ccA	2	2	B.1.582	0.000981
ORF1ab/nsp10	59	P59P	ccG	ccT	2	2	B.46	0.041667
ORF1ab/nsp10	59	P59P	ccG	ccA	2	2	C.37	0.000232
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	A.19	0.009434
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	A.2	0.000662
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	A.23.1	0.000704
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	AE.4	0.043478
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	AE.8	0.000489
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	AY.1	0.000396
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	AY.101	0.00049
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	AY.104	0.001984
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	AY.115	0.005208
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	AY.12	0.000316
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	AY.16	0.00038
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	AY.3.1	0.000085
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	AY.46.1	0.001027
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	AY.47	0.000031
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	AY.56	0.001605
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	AY.59	0.00053
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	AY.65	0.000533
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	AY.7.1	0.000113
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	AY.71	0.000475
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	AY.86	0.00083
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	AY.9.2	0.000037
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	AY.93	0.000273
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	AZ.2.1	0.00813
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B	0.000128
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	B.1.1.1	0.000327
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.1.222	0.000204
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.1.270	0.010309
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	B.1.1.31	0.066667
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.1.312	0.001912
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.1.318	0.000302
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.1.368	0.003086
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.1.369	0.000446
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.1.389	0.006061
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	B.1.1.47	0.005348
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	B.1.1.528	0.004808
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.1.72	0.030303
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.108	0.005814
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	B.1.139	0.000733
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	B.1.147	0.000756
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	B.1.160.14	0.002119
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	B.1.177.4	0.000211
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	B.1.177.43	0.001477
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.179	0.003759
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.206	0.000816
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	B.1.258.16	0.001637
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	B.1.279	0.000514
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.330	0.028571
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.36.16	0.001425
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	B.1.36.18	0.00042
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.36.29	0.000517
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.361	0.001289
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.380	0.006623
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.396	0.000706
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	B.1.400	0.000429
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.403	0.003268
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.404	0.001302
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.405	0.012346
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	B.1.416	0.001269
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.420	0.010417
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	B.1.438.1	0.000107
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.456	0.003268
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	B.1.466.2	0.000391
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	B.1.468	0.005714
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	B.1.470	0.001404
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.471	0.002732
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.494	0.034483
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.503	0.002488
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.504	0.03125
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	B.1.517	0.000427
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	B.1.564	0.000426
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.567	0.003333
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.580	0.004065
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	B.1.588	0.00091
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.596.1	0.009346
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.1.81	0.021277
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	B.1.84	0.020833
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	B.12	0.00641
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	B.39	0.002331
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.4	0.002208
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	B.52	0.010101
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	C.36	0.000911
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	N.4	0.004255
ORF1ab/nsp10	59	P59P	ccG	ccA	1	1	N.6	0.007092
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	P.1.12	0.000484
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	P.1.15	0.000232
ORF1ab/nsp10	59	P59P	ccG	ccT	1	1	Q.3	0.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.