CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp10 : Mut = P136P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp10136P136PP4389PsynccCccT316630710.96999413430-13432
ORF1ab/nsp10136P136PP4389PsynccCccA3166920.029058713430-13432
ORF1ab/nsp10136P136PP4389PsynccCccG316630.00094756813430-13432

Details of the mutation P136P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp10136P136PccCccT30713166All0.000587
ORF1ab/nsp10136P136PccCccA923166All0.000018
ORF1ab/nsp10136P136PccCccG33166All0.000001
ORF1ab/nsp10136P136PccCccT17541769AY.40.00273
ORF1ab/nsp10136P136PccCccA151769AY.40.000023
ORF1ab/nsp10136P136PccCccT448454B.1.1.70.000401
ORF1ab/nsp10136P136PccCccA5454B.1.1.70.000004
ORF1ab/nsp10136P136PccCccG1454B.1.1.70.000001
ORF1ab/nsp10136P136PccCccT113113P.1.120.054695
ORF1ab/nsp10136P136PccCccT8997B.1.617.20.000335
ORF1ab/nsp10136P136PccCccA897B.1.617.20.00003
ORF1ab/nsp10136P136PccCccT7788B.10.000705
ORF1ab/nsp10136P136PccCccA1188B.10.000101
ORF1ab/nsp10136P136PccCccT4545AY.30.000448
ORF1ab/nsp10136P136PccCccT4444B.1.1.4420.814815
ORF1ab/nsp10136P136PccCccT3939B.1.5260.000917
ORF1ab/nsp10136P136PccCccA2338AY.440.00014
ORF1ab/nsp10136P136PccCccT1538AY.440.000091
ORF1ab/nsp10136P136PccCccT2424AY.450.00292
ORF1ab/nsp10136P136PccCccT2323AY.250.000138
ORF1ab/nsp10136P136PccCccT2323B.1.5750.006978
ORF1ab/nsp10136P136PccCccT1819AY.1020.000477
ORF1ab/nsp10136P136PccCccA119AY.1020.000027
ORF1ab/nsp10136P136PccCccT1819AY.1030.000112
ORF1ab/nsp10136P136PccCccA119AY.1030.000006
ORF1ab/nsp10136P136PccCccT1819AY.430.00008
ORF1ab/nsp10136P136PccCccA119AY.430.000004
ORF1ab/nsp10136P136PccCccT1717B.1.1.330.007155
ORF1ab/nsp10136P136PccCccT1617B.1.1770.000211
ORF1ab/nsp10136P136PccCccA117B.1.1770.000013
ORF1ab/nsp10136P136PccCccT1416B.1.20.000123
ORF1ab/nsp10136P136PccCccA216B.1.20.000018
ORF1ab/nsp10136P136PccCccT1414B.1.10.000254
ORF1ab/nsp10136P136PccCccT1313AY.390.000321
ORF1ab/nsp10136P136PccCccT1212B.1.4290.000282
ORF1ab/nsp10136P136PccCccT99AY.4.10.006637
ORF1ab/nsp10136P136PccCccT99B.1.1.500.00611
ORF1ab/nsp10136P136PccCccA48AY.420.000161
ORF1ab/nsp10136P136PccCccT48AY.420.000161
ORF1ab/nsp10136P136PccCccT88B.1.177.810.001515
ORF1ab/nsp10136P136PccCccT88P.20.001493
ORF1ab/nsp10136P136PccCccT77AY.1170.000592
ORF1ab/nsp10136P136PccCccT77AY.510.006364
ORF1ab/nsp10136P136PccCccT77B.1.177.510.031963
ORF1ab/nsp10136P136PccCccT56AY.230.000349
ORF1ab/nsp10136P136PccCccA16AY.230.00007
ORF1ab/nsp10136P136PccCccT66B.1.1110.007051
ORF1ab/nsp10136P136PccCccT66B.1.360.000875
ORF1ab/nsp10136P136PccCccT55AY.610.000524
ORF1ab/nsp10136P136PccCccT55B.1.1390.003666
ORF1ab/nsp10136P136PccCccT55B.1.2100.010661
ORF1ab/nsp10136P136PccCccT55P.10.000079
ORF1ab/nsp10136P136PccCccT44AY.46.50.000794
ORF1ab/nsp10136P136PccCccT24AY.98.10.000097
ORF1ab/nsp10136P136PccCccA24AY.98.10.000097
ORF1ab/nsp10136P136PccCccT44B.1.1.3480.003185
ORF1ab/nsp10136P136PccCccT44B.1.5250.000453
ORF1ab/nsp10136P136PccCccT34D.20.000225
ORF1ab/nsp10136P136PccCccA14D.20.000075
ORF1ab/nsp10136P136PccCccT33A.280.007937
ORF1ab/nsp10136P136PccCccT23AY.1130.000285
ORF1ab/nsp10136P136PccCccA13AY.1130.000142
ORF1ab/nsp10136P136PccCccT33AY.200.000117
ORF1ab/nsp10136P136PccCccT33AY.360.000445
ORF1ab/nsp10136P136PccCccT33AY.9.10.000251
ORF1ab/nsp10136P136PccCccT33B.1.2430.000209
ORF1ab/nsp10136P136PccCccT33B.1.4270.000151
ORF1ab/nsp10136P136PccCccT33B.1.4330.009585
ORF1ab/nsp10136P136PccCccT33B.1.4700.004213
ORF1ab/nsp10136P136PccCccT33B.1.5650.002431
ORF1ab/nsp10136P136PccCccA33Q.10.000379
ORF1ab/nsp10136P136PccCccT22AY.1190.000071
ORF1ab/nsp10136P136PccCccT22AY.1200.000074
ORF1ab/nsp10136P136PccCccT22AY.20.000712
ORF1ab/nsp10136P136PccCccA12AY.260.000028
ORF1ab/nsp10136P136PccCccT12AY.260.000028
ORF1ab/nsp10136P136PccCccT22AY.290.000032
ORF1ab/nsp10136P136PccCccT22AY.340.000194
ORF1ab/nsp10136P136PccCccT22AY.790.002421
ORF1ab/nsp10136P136PccCccA12AY.990.001049
ORF1ab/nsp10136P136PccCccT12AY.990.001049
ORF1ab/nsp10136P136PccCccT12B0.000128
ORF1ab/nsp10136P136PccCccA12B0.000128
ORF1ab/nsp10136P136PccCccT22B.1.1.5190.000079
ORF1ab/nsp10136P136PccCccT22B.1.177.210.000153
ORF1ab/nsp10136P136PccCccT12B.1.3510.00003
ORF1ab/nsp10136P136PccCccA12B.1.3510.00003
ORF1ab/nsp10136P136PccCccT22B.1.3710.002245
ORF1ab/nsp10136P136PccCccT22B.1.5950.000522
ORF1ab/nsp10136P136PccCccT22B.1.617.10.000258
ORF1ab/nsp10136P136PccCccT22B.1.6370.000146
ORF1ab/nsp10136P136PccCccT22C.350.001548
ORF1ab/nsp10136P136PccCccT22C.370.000232
ORF1ab/nsp10136P136PccCccT22Q.80.00033
ORF1ab/nsp10136P136PccCccA11A0.000387
ORF1ab/nsp10136P136PccCccT11A.2.50.000499
ORF1ab/nsp10136P136PccCccT11AA.20.007692
ORF1ab/nsp10136P136PccCccT11AY.1080.001103
ORF1ab/nsp10136P136PccCccT11AY.1180.000063
ORF1ab/nsp10136P136PccCccA11AY.120.000316
ORF1ab/nsp10136P136PccCccT11AY.120.2.10.000498
ORF1ab/nsp10136P136PccCccT11AY.130.000161
ORF1ab/nsp10136P136PccCccT11AY.140.000088
ORF1ab/nsp10136P136PccCccT11AY.16.10.00047
ORF1ab/nsp10136P136PccCccA11AY.240.000431
ORF1ab/nsp10136P136PccCccT11AY.3.10.000085
ORF1ab/nsp10136P136PccCccT11AY.330.000067
ORF1ab/nsp10136P136PccCccT11AY.39.20.001541
ORF1ab/nsp10136P136PccCccT11AY.4.30.000842
ORF1ab/nsp10136P136PccCccT11AY.50.000021
ORF1ab/nsp10136P136PccCccA11AY.530.000288
ORF1ab/nsp10136P136PccCccT11AY.540.000095
ORF1ab/nsp10136P136PccCccA11AY.550.000917
ORF1ab/nsp10136P136PccCccT11AY.690.000187
ORF1ab/nsp10136P136PccCccT11AY.720.001361
ORF1ab/nsp10136P136PccCccT11AY.90.000068
ORF1ab/nsp10136P136PccCccT11AY.940.000443
ORF1ab/nsp10136P136PccCccT11B.1.1.10.000327
ORF1ab/nsp10136P136PccCccT11B.1.1.1350.004695
ORF1ab/nsp10136P136PccCccT11B.1.1.2140.000055
ORF1ab/nsp10136P136PccCccT11B.1.1.2220.000204
ORF1ab/nsp10136P136PccCccG11B.1.1.250.000569
ORF1ab/nsp10136P136PccCccT11B.1.1.3110.000358
ORF1ab/nsp10136P136PccCccT11B.1.1.3120.001912
ORF1ab/nsp10136P136PccCccT11B.1.1.3170.000412
ORF1ab/nsp10136P136PccCccA11B.1.1.3240.052632
ORF1ab/nsp10136P136PccCccT11B.1.1.3330.001076
ORF1ab/nsp10136P136PccCccA11B.1.1.3350.012987
ORF1ab/nsp10136P136PccCccT11B.1.1.3590.027778
ORF1ab/nsp10136P136PccCccT11B.1.1.4020.011111
ORF1ab/nsp10136P136PccCccT11B.1.1.4120.007634
ORF1ab/nsp10136P136PccCccT11B.1.1.4320.001266
ORF1ab/nsp10136P136PccCccT11B.1.1.4850.016667
ORF1ab/nsp10136P136PccCccT11B.1.1.5280.004808
ORF1ab/nsp10136P136PccCccT11B.1.1600.000031
ORF1ab/nsp10136P136PccCccT11B.1.177.100.000878
ORF1ab/nsp10136P136PccCccT11B.1.177.150.000631
ORF1ab/nsp10136P136PccCccT11B.1.177.350.000691
ORF1ab/nsp10136P136PccCccT11B.1.177.740.015152
ORF1ab/nsp10136P136PccCccT11B.1.177.750.001041
ORF1ab/nsp10136P136PccCccT11B.1.177.770.000726
ORF1ab/nsp10136P136PccCccT11B.1.177.860.000183
ORF1ab/nsp10136P136PccCccT11B.1.177.870.000728
ORF1ab/nsp10136P136PccCccT11B.1.2210.000071
ORF1ab/nsp10136P136PccCccT11B.1.2350.002519
ORF1ab/nsp10136P136PccCccT11B.1.2400.000216
ORF1ab/nsp10136P136PccCccT11B.1.2580.000067
ORF1ab/nsp10136P136PccCccT11B.1.3050.002151
ORF1ab/nsp10136P136PccCccT11B.1.351.30.000876
ORF1ab/nsp10136P136PccCccT11B.1.36.100.004785
ORF1ab/nsp10136P136PccCccG11B.1.4220.000812
ORF1ab/nsp10136P136PccCccT11B.1.438.10.000107
ORF1ab/nsp10136P136PccCccA11B.1.466.20.000391
ORF1ab/nsp10136P136PccCccT11B.1.4930.025641
ORF1ab/nsp10136P136PccCccT11B.1.5060.02381
ORF1ab/nsp10136P136PccCccT11B.1.5710.009709
ORF1ab/nsp10136P136PccCccT11B.1.617.30.002985
ORF1ab/nsp10136P136PccCccT11B.1.6210.000089
ORF1ab/nsp10136P136PccCccT11B.1.6280.000352
ORF1ab/nsp10136P136PccCccT11B.30.000831
ORF1ab/nsp10136P136PccCccT11C.160.00106
ORF1ab/nsp10136P136PccCccT11P.1.100.000269
ORF1ab/nsp10136P136PccCccT11P.1.140.000048
ORF1ab/nsp10136P136PccCccT11Q.40.000455
ORF1ab/nsp10136P136PccCccT11W.30.005263

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.