CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp10 : CodonNum = 85

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1085N85NN4338NsynaaTaaC35543554113277-13279
ORF1ab/nsp1085N85DN4338DnonsynAatGat593593113277-13279
ORF1ab/nsp1085N85SN4338SnonsynaAtaGt442442113277-13279
ORF1ab/nsp1085N85delN4338deldelAAT---7474113277-13279
ORF1ab/nsp1085N85KN4338KnonsynaaTaaG24230.95833313277-13279
ORF1ab/nsp1085N85KN4338KnonsynaaTaaA2410.041666713277-13279
ORF1ab/nsp1085N85TN4338TnonsynaAtaCt1919113277-13279
ORF1ab/nsp1085N85IN4338InonsynaAtaTt980.88888913277-13279
ORF1ab/nsp1085N85IN4338InonsynaATaTC910.11111113277-13279
ORF1ab/nsp1085N85YN4338YnonsynAatTat77113277-13279
ORF1ab/nsp1085N85HN4338HnonsynAatCat77113277-13279
ORF1ab/nsp1085N85del1N4338del1delAat-at11113277-13279
ORF1ab/nsp1085N85RN4338RnonsynAAtCGt11113277-13279

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1085N85NaaTaaC35543554All0.00068
ORF1ab/nsp1085N85NaaTaaC32293229B.1.1.70.002891
ORF1ab/nsp1085N85DAatGat593593All0.000113
ORF1ab/nsp1085N85DAatGat583583B.1.160.170.991497
ORF1ab/nsp1085N85SaAtaGt442442All0.000085
ORF1ab/nsp1085N85SaAtaGt131131B.1.2210.009305
ORF1ab/nsp1085N85SaAtaGt9696AY.420.003862
ORF1ab/nsp1085N85delAAT---7474All0.000014
ORF1ab/nsp1085N85NaaTaaC6565AY.200.002526
ORF1ab/nsp1085N85SaAtaGt6161AY.60.002509
ORF1ab/nsp1085N85SaAtaGt5454AY.440.000329
ORF1ab/nsp1085N85delAAT---3131B.1.1.70.000028
ORF1ab/nsp1085N85NaaTaaC2727AY.7.10.003043
ORF1ab/nsp1085N85KaaTaaG2324All0.000004
ORF1ab/nsp1085N85KaaTaaA124All0
ORF1ab/nsp1085N85NaaTaaC2424B.1.617.20.00009
ORF1ab/nsp1085N85KaaTaaG2121B.1.20.000185
ORF1ab/nsp1085N85SaAtaGt2020B.1.1.70.000018
ORF1ab/nsp1085N85TaAtaCt1919All0.000004
ORF1ab/nsp1085N85NaaTaaC1818AY.40.000028
ORF1ab/nsp1085N85NaaTaaC1818B.1.351.20.005446
ORF1ab/nsp1085N85NaaTaaC1818B.1.4290.000424
ORF1ab/nsp1085N85TaAtaCt1515B.1.1.70.000013
ORF1ab/nsp1085N85NaaTaaC1515C.370.001741
ORF1ab/nsp1085N85NaaTaaC1212B.10.00011
ORF1ab/nsp1085N85NaaTaaC1111AY.430.000049
ORF1ab/nsp1085N85NaaTaaC1111B.1.1770.000145
ORF1ab/nsp1085N85NaaTaaC1111B.1.20.000097
ORF1ab/nsp1085N85IaAtaTt89All0.000002
ORF1ab/nsp1085N85IaATaTC19All0
ORF1ab/nsp1085N85YAatTat77All0.000001
ORF1ab/nsp1085N85HAatCat77All0.000001
ORF1ab/nsp1085N85SaAtaGt77B.1.1.3980.022581
ORF1ab/nsp1085N85SaAtaGt77B.1.617.20.000026
ORF1ab/nsp1085N85IaAtaTt660.333333
ORF1ab/nsp1085N85NaaTaaC66AY.1170.000507
ORF1ab/nsp1085N85NaaTaaC66AY.30.00006
ORF1ab/nsp1085N85NaaTaaC66AY.440.000037
ORF1ab/nsp1085N85SaAtaGt66B.1.4290.000141
ORF1ab/nsp1085N85SaAtaGt55AY.40.000008
ORF1ab/nsp1085N85NaaTaaC55B.1.10.000091
ORF1ab/nsp1085N85SaAtaGt55B.1.10.000091
ORF1ab/nsp1085N85SaAtaGt55B.1.1.5190.000199
ORF1ab/nsp1085N85delAAT---55B.1.1770.000066
ORF1ab/nsp1085N85NaaTaaC44AY.1030.000025
ORF1ab/nsp1085N85NaaTaaC44AY.500.003197
ORF1ab/nsp1085N85NaaTaaC44AY.640.002381
ORF1ab/nsp1085N85SaAtaGt44AY.99.20.000369
ORF1ab/nsp1085N85DAatGat44B.1.1600.000125
ORF1ab/nsp1085N85NaaTaaC33AY.290.000047
ORF1ab/nsp1085N85delAAT---33AY.4.50.000322
ORF1ab/nsp1085N85delAAT---33AY.430.000013
ORF1ab/nsp1085N85NaaTaaC33AY.480.001395
ORF1ab/nsp1085N85NaaTaaC33AY.60.000123
ORF1ab/nsp1085N85NaaTaaC33AY.620.001307
ORF1ab/nsp1085N85HAatCat33B.1.1.10.00098
ORF1ab/nsp1085N85SaAtaGt33B.1.1.1890.004539
ORF1ab/nsp1085N85SaAtaGt33B.1.1.2840.000322
ORF1ab/nsp1085N85SaAtaGt33B.1.1.3170.001235
ORF1ab/nsp1085N85SaAtaGt33B.1.20.000026
ORF1ab/nsp1085N85NaaTaaC33B.1.3510.000089
ORF1ab/nsp1085N85YAatTat220.111111
ORF1ab/nsp1085N85NaaTaaC22AU.20.004843
ORF1ab/nsp1085N85NaaTaaC22AY.250.000012
ORF1ab/nsp1085N85delAAT---22AY.250.000012
ORF1ab/nsp1085N85SaAtaGt22AY.260.000057
ORF1ab/nsp1085N85SaAtaGt22AY.290.000032
ORF1ab/nsp1085N85NaaTaaC22AY.360.000296
ORF1ab/nsp1085N85delAAT---22AY.40.000003
ORF1ab/nsp1085N85SaAtaGt22B.1.1.1530.002191
ORF1ab/nsp1085N85SaAtaGt22B.1.1.280.000622
ORF1ab/nsp1085N85YAatTat22B.1.1.70.000002
ORF1ab/nsp1085N85KaaTaaG22B.1.1.70.000002
ORF1ab/nsp1085N85YAatTat22B.1.20.000018
ORF1ab/nsp1085N85SaAtaGt22B.1.258.170.000208
ORF1ab/nsp1085N85SaAtaGt22B.1.3510.000059
ORF1ab/nsp1085N85NaaTaaC22B.1.5960.000174
ORF1ab/nsp1085N85NaaTaaC22B.1.6370.000146
ORF1ab/nsp1085N85SaAtaGt22P.10.000032
ORF1ab/nsp1085N85SaAtaGt22P.1.40.001953
ORF1ab/nsp1085N85NaaTaaC22Q.10.000253
ORF1ab/nsp1085N85NaaTaaC11A0.000387
ORF1ab/nsp1085N85NaaTaaC11A.20.000662
ORF1ab/nsp1085N85delAAT---11AH.30.003802
ORF1ab/nsp1085N85del1Aat-at11All0
ORF1ab/nsp1085N85RAAtCGt11All0
ORF1ab/nsp1085N85NaaTaaC11AY.10.000396
ORF1ab/nsp1085N85SaAtaGt11AY.1000.000046
ORF1ab/nsp1085N85NaaTaaC11AY.1020.000027
ORF1ab/nsp1085N85SaAtaGt11AY.1030.000006
ORF1ab/nsp1085N85DAatGat11AY.1030.000006
ORF1ab/nsp1085N85SaAtaGt11AY.1060.000335
ORF1ab/nsp1085N85delAAT---11AY.1110.000183
ORF1ab/nsp1085N85NaaTaaC11AY.1140.000231
ORF1ab/nsp1085N85NaaTaaC11AY.1190.000035
ORF1ab/nsp1085N85NaaTaaC11AY.1210.000135
ORF1ab/nsp1085N85NaaTaaC11AY.16.10.00047
ORF1ab/nsp1085N85delAAT---11AY.190.00114
ORF1ab/nsp1085N85SaAtaGt11AY.200.000039
ORF1ab/nsp1085N85DAatGat11AY.250.000006
ORF1ab/nsp1085N85NaaTaaC11AY.260.000028
ORF1ab/nsp1085N85SaAtaGt11AY.30.00001
ORF1ab/nsp1085N85TaAtaCt11AY.30.00001
ORF1ab/nsp1085N85delAAT---11AY.30.00001
ORF1ab/nsp1085N85NaaTaaC11AY.350.000233
ORF1ab/nsp1085N85IaAtaTt11AY.390.000025
ORF1ab/nsp1085N85NaaTaaC11AY.390.000025
ORF1ab/nsp1085N85SaAtaGt11AY.390.000025
ORF1ab/nsp1085N85HAatCat11AY.40.000002
ORF1ab/nsp1085N85YAatTat11AY.40.000002
ORF1ab/nsp1085N85SaAtaGt11AY.4.50.000107
ORF1ab/nsp1085N85DAatGat11AY.410.000294
ORF1ab/nsp1085N85HAatCat11AY.430.000004
ORF1ab/nsp1085N85HAatCat11AY.440.000006
ORF1ab/nsp1085N85IaATaTC11AY.440.000006
ORF1ab/nsp1085N85delAAT---11AY.46.20.000635
ORF1ab/nsp1085N85DAatGat11AY.470.000031
ORF1ab/nsp1085N85NaaTaaC11AY.50.000021
ORF1ab/nsp1085N85NaaTaaC11AY.590.00053
ORF1ab/nsp1085N85delAAT---11AY.600.000938
ORF1ab/nsp1085N85SaAtaGt11AY.620.000436
ORF1ab/nsp1085N85delAAT---11AY.670.000464
ORF1ab/nsp1085N85NaaTaaC11AY.680.000274
ORF1ab/nsp1085N85NaaTaaC11AY.70.000196
ORF1ab/nsp1085N85NaaTaaC11AY.740.000116
ORF1ab/nsp1085N85delAAT---11AY.90.000068
ORF1ab/nsp1085N85NaaTaaC11AY.9.20.000037
ORF1ab/nsp1085N85NaaTaaC11AY.930.000273
ORF1ab/nsp1085N85SaAtaGt11AY.98.10.000048
ORF1ab/nsp1085N85delAAT---11AY.990.001049
ORF1ab/nsp1085N85delAAT---11B.10.000009
ORF1ab/nsp1085N85TaAtaCt11B.10.000009
ORF1ab/nsp1085N85KaaTaaA11B.1.10.000018
ORF1ab/nsp1085N85delAAT---11B.1.1.10.000327
ORF1ab/nsp1085N85NaaTaaC11B.1.1.2770.000759
ORF1ab/nsp1085N85delAAT---11B.1.1.2790.001121
ORF1ab/nsp1085N85delAAT---11B.1.1.3110.000358
ORF1ab/nsp1085N85NaaTaaC11B.1.1.3180.000302
ORF1ab/nsp1085N85delAAT---11B.1.1.3480.000796
ORF1ab/nsp1085N85SaAtaGt11B.1.1.370.000193
ORF1ab/nsp1085N85delAAT---11B.1.1.390.00051
ORF1ab/nsp1085N85NaaTaaC11B.1.1.5190.00004
ORF1ab/nsp1085N85DAatGat11B.1.1.70.000001
ORF1ab/nsp1085N85NaaTaaC11B.1.1.700.000341
ORF1ab/nsp1085N85NaaTaaC11B.1.1600.000031
ORF1ab/nsp1085N85DAatGat11B.1.1770.000013
ORF1ab/nsp1085N85delAAT---11B.1.177.170.000821
ORF1ab/nsp1085N85delAAT---11B.1.177.180.00116
ORF1ab/nsp1085N85delAAT---11B.1.177.570.000281
ORF1ab/nsp1085N85delAAT---11B.1.177.60.000977
ORF1ab/nsp1085N85delAAT---11B.1.177.690.001484
ORF1ab/nsp1085N85NaaTaaC11B.1.177.830.001481
ORF1ab/nsp1085N85delAAT---11B.1.177.830.001481
ORF1ab/nsp1085N85NaaTaaC11B.1.2060.000816
ORF1ab/nsp1085N85del1Aat-at11B.1.2060.000816
ORF1ab/nsp1085N85delAAT---11B.1.230.006061
ORF1ab/nsp1085N85NaaTaaC11B.1.2340.000132
ORF1ab/nsp1085N85NaaTaaC11B.1.2430.00007
ORF1ab/nsp1085N85delAAT---11B.1.258.110.000396
ORF1ab/nsp1085N85IaAtaTt11B.1.360.000146
ORF1ab/nsp1085N85delAAT---11B.1.360.000146
ORF1ab/nsp1085N85NaaTaaC11B.1.36.360.000602
ORF1ab/nsp1085N85delAAT---11B.1.36.380.001642
ORF1ab/nsp1085N85SaAtaGt11B.1.4060.006061
ORF1ab/nsp1085N85TaAtaCt11B.1.466.20.000391
ORF1ab/nsp1085N85SaAtaGt11B.1.4990.00105
ORF1ab/nsp1085N85SaAtaGt11B.1.5260.000024
ORF1ab/nsp1085N85NaaTaaC11B.1.5260.000024
ORF1ab/nsp1085N85NaaTaaC11B.1.575.10.002439
ORF1ab/nsp1085N85HAatCat11B.1.617.20.000004
ORF1ab/nsp1085N85RAAtCGt11B.1.617.20.000004
ORF1ab/nsp1085N85delAAT---11B.1.617.20.000004
ORF1ab/nsp1085N85NaaTaaC11B.1.617.30.002985
ORF1ab/nsp1085N85delAAT---11B.1.6300.005236
ORF1ab/nsp1085N85NaaTaaC11B.1.6310.003367
ORF1ab/nsp1085N85TaAtaCt11D.20.000075
ORF1ab/nsp1085N85NaaTaaC11P.10.000016
ORF1ab/nsp1085N85delAAT---11P.10.000016