CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp10 | 84 | P84S | P4337S | nonsyn | Cca | Tca | 2593 | 2593 | 1 | 13274-13276 |
ORF1ab/nsp10 | 84 | P84L | P4337L | nonsyn | cCa | cTa | 1420 | 1418 | 0.998592 | 13274-13276 |
ORF1ab/nsp10 | 84 | P84L | P4337L | nonsyn | CCa | TTa | 1420 | 2 | 0.00140845 | 13274-13276 |
ORF1ab/nsp10 | 84 | P84Q | P4337Q | nonsyn | cCa | cAa | 298 | 298 | 1 | 13274-13276 |
ORF1ab/nsp10 | 84 | P84P | P4337P | syn | ccA | ccG | 76 | 49 | 0.644737 | 13274-13276 |
ORF1ab/nsp10 | 84 | P84P | P4337P | syn | ccA | ccT | 76 | 25 | 0.328947 | 13274-13276 |
ORF1ab/nsp10 | 84 | P84P | P4337P | syn | ccA | ccC | 76 | 2 | 0.0263158 | 13274-13276 |
ORF1ab/nsp10 | 84 | P84del | P4337del | del | CCA | --- | 75 | 75 | 1 | 13274-13276 |
ORF1ab/nsp10 | 84 | P84del1 | P4337del1 | del | Cca | -ca | 21 | 17 | 0.809524 | 13274-13276 |
ORF1ab/nsp10 | 84 | P84del1 | P4337del1 | del | ccA | cc- | 21 | 4 | 0.190476 | 13274-13276 |
ORF1ab/nsp10 | 84 | P84T | P4337T | nonsyn | Cca | Aca | 16 | 14 | 0.875 | 13274-13276 |
ORF1ab/nsp10 | 84 | P84T | P4337T | nonsyn | CcA | AcG | 16 | 2 | 0.125 | 13274-13276 |
ORF1ab/nsp10 | 84 | P84R | P4337R | nonsyn | cCA | cGT | 6 | 5 | 0.833333 | 13274-13276 |
ORF1ab/nsp10 | 84 | P84R | P4337R | nonsyn | cCa | cGa | 6 | 1 | 0.166667 | 13274-13276 |
ORF1ab/nsp10 | 84 | P84I | P4337I | nonsyn | CCa | ATa | 2 | 2 | 1 | 13274-13276 |
ORF1ab/nsp10 | 84 | P84A | P4337A | nonsyn | Cca | Gca | 1 | 1 | 1 | 13274-13276 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2593 | 2593 | All | 0.000496 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1418 | 1420 | All | 0.000271 |
ORF1ab/nsp10 | 84 | P84L | CCa | TTa | 2 | 1420 | All | 0 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 470 | 470 | AY.4 | 0.000732 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 449 | 449 | AY.4 | 0.000699 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 298 | 298 | All | 0.000057 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 264 | 264 | B.1.1.7 | 0.000236 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 187 | 187 | AY.4 | 0.000291 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 179 | 179 | AY.114 | 0.041368 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 168 | 168 | AY.25 | 0.00101 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 163 | 163 | AY.37 | 0.051517 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 158 | 158 | B.1.2 | 0.001391 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 126 | 126 | AY.44 | 0.000767 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 122 | 122 | B.1.1.7 | 0.000109 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 100 | 100 | B.1.590 | 0.454545 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 94 | 94 | B.1.591 | 1 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 85 | 85 | B.1.617.2 | 0.00032 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccG | 49 | 76 | All | 0.000009 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccT | 25 | 76 | All | 0.000005 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccC | 2 | 76 | All | 0 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 76 | 76 | AY.3 | 0.000756 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 76 | 76 | AY.43 | 0.000337 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 75 | 75 | All | 0.000014 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 66 | 66 | B.1.609 | 0.03164 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 56 | 57 | B.1.617.2 | 0.000211 |
ORF1ab/nsp10 | 84 | P84L | CCa | TTa | 1 | 57 | B.1.617.2 | 0.000004 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 56 | 56 | P.5 | 0.767123 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 52 | 52 | AY.103 | 0.000323 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 48 | 48 | B.1.2 | 0.000423 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 45 | 45 | AY.99.2 | 0.004147 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 39 | 39 | B.1 | 0.000357 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 39 | 39 | B.1.160 | 0.001216 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 38 | 38 | B.1.1 | 0.000689 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 36 | 36 | AY.26 | 0.001019 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 36 | 36 | B.1 | 0.00033 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 35 | 35 | B.1.258 | 0.002329 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 34 | 34 | B.1.177 | 0.000448 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 33 | 33 | P.1 | 0.00052 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 31 | 31 | AY.75 | 0.001737 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 31 | 31 | AY.98 | 0.002449 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 30 | 30 | B.1.1.7 | 0.000027 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 25 | 25 | B.1.177 | 0.000329 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 25 | 25 | B.1.551 | 0.032258 |
ORF1ab/nsp10 | 84 | P84del1 | Cca | -ca | 17 | 21 | All | 0.000003 |
ORF1ab/nsp10 | 84 | P84del1 | ccA | cc- | 4 | 21 | All | 0.000001 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 21 | 21 | AY.25 | 0.000126 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 19 | 19 | B.1.429 | 0.000447 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 18 | 18 | AY.29 | 0.000284 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 18 | 18 | AY.43 | 0.00008 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 18 | 18 | B.1.561 | 0.007146 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 17 | 17 | AE.8 | 0.008313 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 17 | 17 | AY.35 | 0.003962 |
ORF1ab/nsp10 | 84 | P84T | Cca | Aca | 14 | 16 | All | 0.000003 |
ORF1ab/nsp10 | 84 | P84T | CcA | AcG | 2 | 16 | All | 0 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccG | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 16 | 16 | B.1.36 | 0.002334 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 15 | 15 | B.1.177 | 0.000198 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 14 | 14 | AY.39 | 0.000346 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 14 | 14 | B.1.617.2 | 0.000053 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 13 | 13 | AY.111 | 0.002381 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 13 | 13 | AY.4.1 | 0.009587 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 13 | 13 | B.1.1.153 | 0.014239 |
ORF1ab/nsp10 | 84 | P84del1 | Cca | -ca | 12 | 13 | B.1.1.7 | 0.000011 |
ORF1ab/nsp10 | 84 | P84del1 | ccA | cc- | 1 | 13 | B.1.1.7 | 0.000001 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 12 | 12 | AY.44 | 0.000073 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 12 | 12 | AY.5 | 0.000248 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 12 | 12 | B.1.243 | 0.000835 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 11 | 11 | AY.103 | 0.000068 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 11 | 11 | AY.3 | 0.000109 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 10 | 10 | AY.102 | 0.000265 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 10 | 10 | AY.103 | 0.000062 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 10 | 10 | B.1.1.176 | 0.004394 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 10 | 10 | B.1.1.519 | 0.000397 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 10 | 10 | B.1.595 | 0.00261 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 9 | 9 | AY.100 | 0.000414 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 9 | 9 | B.1.1 | 0.000163 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 9 | 9 | B.1.509 | 0.007792 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 9 | 9 | D.2 | 0.000675 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 8 | 8 | AY.98.1 | 0.000387 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccT | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 7 | 7 | AY.39.1 | 0.000277 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 7 | 7 | B.1.1.214 | 0.000388 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 7 | 7 | B.1.427 | 0.000353 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp10 | 84 | P84R | cCA | cGT | 5 | 6 | All | 0.000001 |
ORF1ab/nsp10 | 84 | P84R | cCa | cGa | 1 | 6 | All | 0 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 6 | 6 | AY.3.1 | 0.000512 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccG | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccG | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccT | 6 | 6 | P.1.17 | 0.000971 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 5 | 5 | AY.30 | 0.001979 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 5 | 5 | AY.84 | 0.002187 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 5 | 5 | N.5 | 0.008834 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 5 | 5 | Z.1 | 0.014451 |
ORF1ab/nsp10 | 84 | P84R | cCA | cGT | 4 | 4 | 0.222222 | |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 4 | 4 | AY.107 | 0.001864 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 4 | 4 | AY.16.1 | 0.00188 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccG | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 4 | 4 | B.1.1.265 | 0.012618 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 4 | 4 | B.1.582 | 0.001963 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 3 | 3 | A | 0.001161 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccG | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccT | 2 | 3 | AY.25 | 0.000012 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccG | 1 | 3 | AY.25 | 0.000006 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp10 | 84 | P84T | Cca | Aca | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 3 | 3 | AY.91.1 | 0.012195 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 3 | 3 | B.1.1.433 | 0.004274 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 3 | 3 | B.1.214 | 0.010989 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 3 | 3 | Q.3 | 0.000435 |
ORF1ab/nsp10 | 84 | P84I | CCa | ATa | 2 | 2 | 0.111111 | |
ORF1ab/nsp10 | 84 | P84T | CcA | AcG | 2 | 2 | 0.111111 | |
ORF1ab/nsp10 | 84 | P84I | CCa | ATa | 2 | 2 | All | 0 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 2 | 2 | AT.1 | 0.010256 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccT | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | AY.81 | 0.003984 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | B.1.1.254 | 0.022472 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | B.1.1.411 | 0.029412 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 2 | 2 | B.1.1.521 | 0.010695 |
ORF1ab/nsp10 | 84 | P84T | Cca | Aca | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 2 | 2 | B.1.177.33 | 0.003289 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | B.1.480 | 0.004975 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccT | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp10 | 84 | P84L | CCa | TTa | 1 | 2 | B.1.595 | 0.000261 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 2 | B.1.595 | 0.000261 |
ORF1ab/nsp10 | 84 | P84T | Cca | Aca | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp10 | 84 | P84del1 | Cca | -ca | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp10 | 84 | P84del1 | ccA | cc- | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccT | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccC | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | C.1.2 | 0.008511 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccG | 2 | 2 | L.3 | 0.007092 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 2 | 2 | P.1.17.1 | 0.00175 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp10 | 84 | P84A | Cca | Gca | 1 | 1 | All | 0 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccG | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp10 | 84 | P84del1 | Cca | -ca | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp10 | 84 | P84T | Cca | Aca | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccG | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccG | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | AY.22 | 0.002092 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp10 | 84 | P84T | Cca | Aca | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccG | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp10 | 84 | P84T | Cca | Aca | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccG | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp10 | 84 | P84del1 | Cca | -ca | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp10 | 84 | P84T | Cca | Aca | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccG | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccG | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B | 0.000128 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp10 | 84 | P84del1 | ccA | cc- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp10 | 84 | P84T | Cca | Aca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp10 | 84 | P84R | cCA | cGT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp10 | 84 | P84A | Cca | Gca | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.1.273 | 0.006757 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccG | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.1.325 | 0.025641 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 1 | 1 | B.1.1.328 | 0.016949 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.1.388 | 0.045455 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.1.40 | 0.034483 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.1.428 | 0.009434 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.160.21 | 0.020408 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.164 | 0.014925 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccC | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp10 | 84 | P84del1 | Cca | -ca | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp10 | 84 | P84R | cCa | cGa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp10 | 84 | P84del1 | ccA | cc- | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp10 | 84 | P84T | Cca | Aca | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp10 | 84 | P84T | Cca | Aca | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.36.33 | 0.007576 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccG | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.491 | 0.052632 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp10 | 84 | P84Q | cCa | cAa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp10 | 84 | P84P | ccA | ccG | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp10 | 84 | P84del1 | Cca | -ca | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp10 | 84 | P84del | CCA | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp10 | 84 | P84L | cCa | cTa | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp10 | 84 | P84S | Cca | Tca | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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