CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp10 : CodonNum = 8

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp108P8SP4261SnonsynCctTct11151115113046-13048
ORF1ab/nsp108P8PP4261PsynccTccC7945330.67128513046-13048
ORF1ab/nsp108P8PP4261PsynccTccA7942150.27078113046-13048
ORF1ab/nsp108P8PP4261PsynccTccG794460.057934513046-13048
ORF1ab/nsp108P8LP4261LnonsyncCtcTt3223040.94409913046-13048
ORF1ab/nsp108P8LP4261LnonsyncCTcTC322170.05279513046-13048
ORF1ab/nsp108P8LP4261LnonsyncCTcTA32210.0031055913046-13048
ORF1ab/nsp108P8HP4261HnonsyncCtcAt7878113046-13048
ORF1ab/nsp108P8TP4261TnonsynCctAct31300.96774213046-13048
ORF1ab/nsp108P8TP4261TnonsynCcTAcG3110.032258113046-13048
ORF1ab/nsp108P8delP4261deldelCCT---2424113046-13048
ORF1ab/nsp108P8AP4261AnonsynCctGct22113046-13048
ORF1ab/nsp108P8del1P4261del1delccTcc-210.513046-13048
ORF1ab/nsp108P8del1P4261del1delCct-ct210.513046-13048
ORF1ab/nsp108P8FP4261FnonsynCCTTTC11113046-13048
ORF1ab/nsp108P8del2P4261del2delCCt--t11113046-13048

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp108P8SCctTct11151115All0.000213
ORF1ab/nsp108P8PccTccC533794All0.000102
ORF1ab/nsp108P8PccTccA215794All0.000041
ORF1ab/nsp108P8PccTccG46794All0.000009
ORF1ab/nsp108P8SCctTct660660AY.260.018685
ORF1ab/nsp108P8PccTccC364369AY.1040.722222
ORF1ab/nsp108P8PccTccG3369AY.1040.005952
ORF1ab/nsp108P8PccTccA2369AY.1040.003968
ORF1ab/nsp108P8LcCtcTt304322All0.000058
ORF1ab/nsp108P8LcCTcTC17322All0.000003
ORF1ab/nsp108P8LcCTcTA1322All0
ORF1ab/nsp108P8PccTccA108110AY.250.00065
ORF1ab/nsp108P8PccTccC2110AY.250.000012
ORF1ab/nsp108P8SCctTct8181AY.430.000359
ORF1ab/nsp108P8HcCtcAt7878All0.000015
ORF1ab/nsp108P8PccTccA5170AY.40.000079
ORF1ab/nsp108P8PccTccC1770AY.40.000026
ORF1ab/nsp108P8PccTccG270AY.40.000003
ORF1ab/nsp108P8LcCtcTt5469B.1.617.20.000203
ORF1ab/nsp108P8LcCTcTC1569B.1.617.20.000056
ORF1ab/nsp108P8PccTccC3462B.1.1.70.00003
ORF1ab/nsp108P8PccTccG1562B.1.1.70.000013
ORF1ab/nsp108P8PccTccA1362B.1.1.70.000012
ORF1ab/nsp108P8HcCtcAt4242B.1.5170.017933
ORF1ab/nsp108P8SCctTct4141AY.250.000247
ORF1ab/nsp108P8SCctTct3939B.1.617.20.000147
ORF1ab/nsp108P8SCctTct3838B.1.1.70.000034
ORF1ab/nsp108P8PccTccC3237B.1.617.20.00012
ORF1ab/nsp108P8PccTccA337B.1.617.20.000011
ORF1ab/nsp108P8PccTccG237B.1.617.20.000008
ORF1ab/nsp108P8SCctTct3434AY.1210.004601
ORF1ab/nsp108P8LcCtcTt3434AY.40.000053
ORF1ab/nsp108P8PccTccC3232AY.1030.000199
ORF1ab/nsp108P8TCctAct3031All0.000006
ORF1ab/nsp108P8TCcTAcG131All0
ORF1ab/nsp108P8SCctTct3131AY.40.000048
ORF1ab/nsp108P8LcCtcTt3030AY.1000.00138
ORF1ab/nsp108P8SCctTct2727B.1.20.000238
ORF1ab/nsp108P8delCCT---2424All0.000005
ORF1ab/nsp108P8SCctTct2222B.1.2430.001531
ORF1ab/nsp108P8LcCtcTt1717B.1.1.2140.000943
ORF1ab/nsp108P8LcCtcTt1616AY.250.000096
ORF1ab/nsp108P8LcCtcTt1212AY.1030.000075
ORF1ab/nsp108P8SCctTct1010AY.30.000099
ORF1ab/nsp108P8LcCtcTt1010B.10.000092
ORF1ab/nsp108P8PccTccA1010B.1.1.4160.00905
ORF1ab/nsp108P8LcCtcTt1010B.1.20.000088
ORF1ab/nsp108P8LcCtcTt99AY.30.00009
ORF1ab/nsp108P8LcCtcTt99B.1.10.000163
ORF1ab/nsp108P8SCctTct88AY.1170.000676
ORF1ab/nsp108P8SCctTct88AY.4.20.000174
ORF1ab/nsp108P8SCctTct88B.10.000073
ORF1ab/nsp108P8PccTccG78B.1.1600.000218
ORF1ab/nsp108P8PccTccC18B.1.1600.000031
ORF1ab/nsp108P8PccTccA57AY.430.000022
ORF1ab/nsp108P8PccTccC27AY.430.000009
ORF1ab/nsp108P8LcCtcTt67AY.440.000037
ORF1ab/nsp108P8LcCTcTC17AY.440.000006
ORF1ab/nsp108P8LcCtcTt77AY.50.000145
ORF1ab/nsp108P8SCctTct66AY.1030.000037
ORF1ab/nsp108P8SCctTct66AY.200.000233
ORF1ab/nsp108P8LcCtcTt66AY.430.000027
ORF1ab/nsp108P8SCctTct66AY.440.000037
ORF1ab/nsp108P8PccTccA46AY.440.000024
ORF1ab/nsp108P8PccTccC26AY.440.000012
ORF1ab/nsp108P8LcCtcTt66B.1.1.70.000005
ORF1ab/nsp108P8HcCtcAt66B.1.4290.000141
ORF1ab/nsp108P8SCctTct66B.6.80.049587
ORF1ab/nsp108P8SCctTct55AY.1180.000313
ORF1ab/nsp108P8SCctTct55AY.360.000741
ORF1ab/nsp108P8HcCtcAt55AY.430.000022
ORF1ab/nsp108P8PccTccG55AY.880.004421
ORF1ab/nsp108P8SCctTct55AY.9.20.000184
ORF1ab/nsp108P8PccTccC55B.1.1.3970.011261
ORF1ab/nsp108P8delCCT---55B.1.1.70.000004
ORF1ab/nsp108P8SCctTct55B.1.4590.020408
ORF1ab/nsp108P8LcCtcTt55B.1.5490.035971
ORF1ab/nsp108P8LcCtcTt44AY.1210.000541
ORF1ab/nsp108P8PccTccG34AY.260.000085
ORF1ab/nsp108P8PccTccA14AY.260.000028
ORF1ab/nsp108P8LcCtcTt44AY.360.000593
ORF1ab/nsp108P8PccTccC44AY.390.000099
ORF1ab/nsp108P8PccTccC44B.10.000037
ORF1ab/nsp108P8PccTccC24B.1.10.000036
ORF1ab/nsp108P8PccTccA24B.1.10.000036
ORF1ab/nsp108P8SCctTct44B.1.1770.000053
ORF1ab/nsp108P8LcCtcTt44B.1.2320.002149
ORF1ab/nsp108P8TCctAct34B.1.617.20.000011
ORF1ab/nsp108P8TCcTAcG14B.1.617.20.000004
ORF1ab/nsp108P8TCctAct44P.10.000063
ORF1ab/nsp108P8LcCtcTt33AY.1180.000188
ORF1ab/nsp108P8SCctTct33AY.1190.000106
ORF1ab/nsp108P8PccTccC23AY.1190.000071
ORF1ab/nsp108P8PccTccA13AY.1190.000035
ORF1ab/nsp108P8PccTccC33AY.120.20.003856
ORF1ab/nsp108P8TCctAct33AY.40.000005
ORF1ab/nsp108P8SCctTct33AY.4.40.001227
ORF1ab/nsp108P8delCCT---33AY.4.50.000322
ORF1ab/nsp108P8TCctAct33AY.50.000062
ORF1ab/nsp108P8LcCtcTt33AY.690.00056
ORF1ab/nsp108P8LcCtcTt33AY.920.000862
ORF1ab/nsp108P8HcCtcAt33B.10.000027
ORF1ab/nsp108P8SCctTct33B.1.10.000054
ORF1ab/nsp108P8PccTccA33B.1.1.5190.000119
ORF1ab/nsp108P8LcCtcTt33B.1.1600.000094
ORF1ab/nsp108P8HcCtcAt33B.1.617.20.000011
ORF1ab/nsp108P8PccTccC33C.370.000348
ORF1ab/nsp108P8SCctTct22AD.20.000438
ORF1ab/nsp108P8ACctGct22All0
ORF1ab/nsp108P8del1ccTcc-12All0
ORF1ab/nsp108P8del1Cct-ct12All0
ORF1ab/nsp108P8LcCtcTt22AY.1130.000285
ORF1ab/nsp108P8PccTccC22AY.1130.000285
ORF1ab/nsp108P8HcCtcAt22AY.250.000012
ORF1ab/nsp108P8LcCtcTt22AY.260.000057
ORF1ab/nsp108P8SCctTct22AY.270.000129
ORF1ab/nsp108P8PccTccG22AY.290.000032
ORF1ab/nsp108P8PccTccC22AY.300.000791
ORF1ab/nsp108P8SCctTct22AY.320.001065
ORF1ab/nsp108P8LcCtcTt22AY.340.000194
ORF1ab/nsp108P8TCctAct22AY.430.000009
ORF1ab/nsp108P8TCctAct22AY.440.000012
ORF1ab/nsp108P8LcCtcTt22AY.46.60.000144
ORF1ab/nsp108P8TCctAct22AY.610.00021
ORF1ab/nsp108P8SCctTct22AY.610.00021
ORF1ab/nsp108P8SCctTct22AY.690.000373
ORF1ab/nsp108P8SCctTct22AY.920.000575
ORF1ab/nsp108P8TCctAct22B.10.000018
ORF1ab/nsp108P8SCctTct22B.1.177.510.009132
ORF1ab/nsp108P8TCctAct22B.1.20.000018
ORF1ab/nsp108P8HcCtcAt22B.1.20.000018
ORF1ab/nsp108P8PccTccA22B.1.20.000018
ORF1ab/nsp108P8HcCtcAt22B.1.221.10.005814
ORF1ab/nsp108P8LcCtcTt22B.1.2430.000139
ORF1ab/nsp108P8PccTccC12B.1.2430.00007
ORF1ab/nsp108P8PccTccG12B.1.2430.00007
ORF1ab/nsp108P8PccTccC22B.1.2580.000133
ORF1ab/nsp108P8SCctTct22B.1.4290.000047
ORF1ab/nsp108P8TCctAct22B.1.4290.000047
ORF1ab/nsp108P8SCctTct22B.1.5260.000047
ORF1ab/nsp108P8SCctTct22B.1.5960.000174
ORF1ab/nsp108P8SCctTct22C.370.000232
ORF1ab/nsp108P8LcCtcTt22D.20.00015
ORF1ab/nsp108P8SCctTct22P.50.027397
ORF1ab/nsp108P8PccTccC22Q.10.000253
ORF1ab/nsp108P8HcCtcAt11A0.000387
ORF1ab/nsp108P8SCctTct11A.20.000662
ORF1ab/nsp108P8LcCtcTt11A.2.20.001689
ORF1ab/nsp108P8LcCtcTt11A.2.50.000499
ORF1ab/nsp108P8LcCtcTt11A.210.00277
ORF1ab/nsp108P8LcCtcTt11A.220.066667
ORF1ab/nsp108P8FCCTTTC11All0
ORF1ab/nsp108P8del2CCt--t11All0
ORF1ab/nsp108P8SCctTct11AY.1000.000046
ORF1ab/nsp108P8SCctTct11AY.1020.000027
ORF1ab/nsp108P8LcCtcTt11AY.1020.000027
ORF1ab/nsp108P8HcCtcAt11AY.1020.000027
ORF1ab/nsp108P8SCctTct11AY.1130.000142
ORF1ab/nsp108P8PccTccC11AY.1170.000085
ORF1ab/nsp108P8LcCtcTt11AY.120.000316
ORF1ab/nsp108P8HcCtcAt11AY.1200.000037
ORF1ab/nsp108P8SCctTct11AY.1200.000037
ORF1ab/nsp108P8PccTccG11AY.1200.000037
ORF1ab/nsp108P8LcCtcTt11AY.140.000088
ORF1ab/nsp108P8HcCtcAt11AY.160.00038
ORF1ab/nsp108P8delCCT---11AY.190.00114
ORF1ab/nsp108P8LcCtcTt11AY.200.000039
ORF1ab/nsp108P8LcCtcTt11AY.230.00007
ORF1ab/nsp108P8PccTccG11AY.30.00001
ORF1ab/nsp108P8LcCtcTt11AY.3.10.000085
ORF1ab/nsp108P8SCctTct11AY.300.000396
ORF1ab/nsp108P8LcCtcTt11AY.330.000067
ORF1ab/nsp108P8LcCtcTt11AY.390.000025
ORF1ab/nsp108P8SCctTct11AY.390.000025
ORF1ab/nsp108P8PccTccA11AY.39.10.00004
ORF1ab/nsp108P8HcCtcAt11AY.40.000002
ORF1ab/nsp108P8PccTccA11AY.4.50.000107
ORF1ab/nsp108P8SCctTct11AY.410.000294
ORF1ab/nsp108P8PccTccC11AY.420.00004
ORF1ab/nsp108P8LcCtcTt11AY.420.00004
ORF1ab/nsp108P8delCCT---11AY.430.000004
ORF1ab/nsp108P8LcCtcTt11AY.460.000104
ORF1ab/nsp108P8del2CCt--t11AY.46.20.000635
ORF1ab/nsp108P8LcCtcTt11AY.470.000031
ORF1ab/nsp108P8PccTccC11AY.50.000021
ORF1ab/nsp108P8PccTccC11AY.5.30.000337
ORF1ab/nsp108P8SCctTct11AY.5.40.000277
ORF1ab/nsp108P8delCCT---11AY.60.000041
ORF1ab/nsp108P8LcCtcTt11AY.60.000041
ORF1ab/nsp108P8LcCtcTt11AY.610.000105
ORF1ab/nsp108P8SCctTct11AY.620.000436
ORF1ab/nsp108P8LcCtcTt11AY.640.000595
ORF1ab/nsp108P8PccTccA11AY.670.000464
ORF1ab/nsp108P8delCCT---11AY.720.001361
ORF1ab/nsp108P8LcCtcTt11AY.750.000056
ORF1ab/nsp108P8LcCtcTt11AY.75.10.00018
ORF1ab/nsp108P8PccTccC11AY.820.001357
ORF1ab/nsp108P8PccTccC11AY.840.000437
ORF1ab/nsp108P8LcCTcTC11AY.900.000684
ORF1ab/nsp108P8PccTccC11AY.900.000684
ORF1ab/nsp108P8PccTccC11AY.920.000287
ORF1ab/nsp108P8TCctAct11AY.930.000273
ORF1ab/nsp108P8SCctTct11AY.980.000079
ORF1ab/nsp108P8PccTccA11AY.980.000079
ORF1ab/nsp108P8PccTccC11B0.000128
ORF1ab/nsp108P8HcCtcAt11B0.000128
ORF1ab/nsp108P8del1ccTcc-11B.1.10.000018
ORF1ab/nsp108P8delCCT---11B.1.1.10.000327
ORF1ab/nsp108P8SCctTct11B.1.1.2090.008929
ORF1ab/nsp108P8SCctTct11B.1.1.2140.000055
ORF1ab/nsp108P8SCctTct11B.1.1.280.000311
ORF1ab/nsp108P8PccTccC11B.1.1.2910.000742
ORF1ab/nsp108P8LcCtcTt11B.1.1.2940.001266
ORF1ab/nsp108P8delCCT---11B.1.1.3480.000796
ORF1ab/nsp108P8delCCT---11B.1.1.370.000193
ORF1ab/nsp108P8LcCtcTt11B.1.1.4640.001473
ORF1ab/nsp108P8ACctGct11B.1.1.70.000001
ORF1ab/nsp108P8TCctAct11B.1.1.70.000001
ORF1ab/nsp108P8LcCtcTt11B.1.1.710.006061
ORF1ab/nsp108P8PccTccC11B.1.1470.000756
ORF1ab/nsp108P8SCctTct11B.1.1600.000031
ORF1ab/nsp108P8LcCtcTt11B.1.160.310.008065
ORF1ab/nsp108P8LcCtcTt11B.1.160.320.004292
ORF1ab/nsp108P8PccTccG11B.1.160.90.007194
ORF1ab/nsp108P8delCCT---11B.1.1770.000013
ORF1ab/nsp108P8PccTccA11B.1.1770.000013
ORF1ab/nsp108P8LcCtcTt11B.1.177.180.00116
ORF1ab/nsp108P8LcCtcTt11B.1.177.200.001517
ORF1ab/nsp108P8SCctTct11B.1.177.450.000381
ORF1ab/nsp108P8LcCtcTt11B.1.177.540.000606
ORF1ab/nsp108P8LcCtcTt11B.1.177.570.000281
ORF1ab/nsp108P8HcCtcAt11B.1.177.60.000977
ORF1ab/nsp108P8PccTccG11B.1.177.600.000218
ORF1ab/nsp108P8PccTccC11B.1.177.690.001484
ORF1ab/nsp108P8delCCT---11B.1.177.830.001481
ORF1ab/nsp108P8SCctTct11B.1.2060.000816
ORF1ab/nsp108P8LcCtcTt11B.1.221.10.002907
ORF1ab/nsp108P8LcCtcTt11B.1.2400.000216
ORF1ab/nsp108P8HcCtcAt11B.1.2430.00007
ORF1ab/nsp108P8TCctAct11B.1.2430.00007
ORF1ab/nsp108P8HcCtcAt11B.1.2580.000067
ORF1ab/nsp108P8TCctAct11B.1.258.30.001675
ORF1ab/nsp108P8HcCtcAt11B.1.3010.005917
ORF1ab/nsp108P8delCCT---11B.1.3110.000275
ORF1ab/nsp108P8PccTccA11B.1.3500.002933
ORF1ab/nsp108P8PccTccA11B.1.3510.00003
ORF1ab/nsp108P8SCctTct11B.1.3510.00003
ORF1ab/nsp108P8HcCtcAt11B.1.360.000146
ORF1ab/nsp108P8PccTccA11B.1.36.120.009615
ORF1ab/nsp108P8LcCtcTt11B.1.36.160.001425
ORF1ab/nsp108P8SCctTct11B.1.36.180.00042
ORF1ab/nsp108P8LcCTcTA11B.1.3710.001122
ORF1ab/nsp108P8delCCT---11B.1.4150.014286
ORF1ab/nsp108P8LcCtcTt11B.1.4270.00005
ORF1ab/nsp108P8TCctAct11B.1.4270.00005
ORF1ab/nsp108P8LcCtcTt11B.1.4290.000024
ORF1ab/nsp108P8SCctTct11B.1.4700.001404
ORF1ab/nsp108P8PccTccA11B.1.4990.00105
ORF1ab/nsp108P8LcCtcTt11B.1.5250.000113
ORF1ab/nsp108P8LcCtcTt11B.1.5260.000024
ORF1ab/nsp108P8ACctGct11B.1.5820.000491
ORF1ab/nsp108P8PccTccC11B.1.5950.000261
ORF1ab/nsp108P8PccTccC11B.1.5960.000087
ORF1ab/nsp108P8SCctTct11B.1.6090.000479
ORF1ab/nsp108P8delCCT---11B.1.617.10.000129
ORF1ab/nsp108P8delCCT---11B.1.617.20.000004
ORF1ab/nsp108P8FCCTTTC11B.1.617.20.000004
ORF1ab/nsp108P8del1Cct-ct11B.1.617.20.000004
ORF1ab/nsp108P8HcCtcAt11B.1.6230.000536
ORF1ab/nsp108P8delCCT---11B.1.6300.005236
ORF1ab/nsp108P8SCctTct11B.1.6370.000073
ORF1ab/nsp108P8HcCtcAt11B.1.88.10.004808
ORF1ab/nsp108P8delCCT---11C.170.055556
ORF1ab/nsp108P8SCctTct11C.330.058824
ORF1ab/nsp108P8delCCT---11N.40.004255
ORF1ab/nsp108P8LcCtcTt11P.10.000016
ORF1ab/nsp108P8PccTccG11P.10.000016
ORF1ab/nsp108P8SCctTct11P.1.130.000898
ORF1ab/nsp108P8PccTccC11P.1.140.000048
ORF1ab/nsp108P8SCctTct11P.70.004367
ORF1ab/nsp108P8SCctTct11Q.30.000145
ORF1ab/nsp108P8PccTccG11Q.80.000165
ORF1ab/nsp108P8SCctTct11R.10.00009
ORF1ab/nsp108P8PccTccA11R.10.00009