CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp10 : CodonNum = 79

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1079C79CC4332CsyntgCtgT16561656113259-13261
ORF1ab/nsp1079C79SC4332SnonsynTgcAgc2282230.9780713259-13261
ORF1ab/nsp1079C79SC4332SnonsyntGctCc22840.017543913259-13261
ORF1ab/nsp1079C79SC4332SnonsyntGCtCA22810.0043859613259-13261
ORF1ab/nsp1079C79delC4332deldelTGC---3838113259-13261
ORF1ab/nsp1079C79del1C4332del1deltgCtg-23210.91304313259-13261
ORF1ab/nsp1079C79del1C4332del1deltGct-c2320.086956513259-13261
ORF1ab/nsp1079C79FC4332FnonsyntGctTc1414113259-13261
ORF1ab/nsp1079C79XC4332XnonsyntgCtgA1010113259-13261
ORF1ab/nsp1079C79YC4332YnonsyntGctAc88113259-13261
ORF1ab/nsp1079C79del2C4332del2deltGCt--66113259-13261
ORF1ab/nsp1079C79RC4332RnonsynTgcCgc66113259-13261
ORF1ab/nsp1079C79GC4332GnonsynTgcGgc33113259-13261
ORF1ab/nsp1079C79TC4332TnonsynTGCACT22113259-13261
ORF1ab/nsp1079C79WC4332WnonsyntgCtgG11113259-13261

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1079C79CtgCtgT16561656All0.000317
ORF1ab/nsp1079C79CtgCtgT322322B.1.1.70.000288
ORF1ab/nsp1079C79STgcAgc223228All0.000043
ORF1ab/nsp1079C79StGctCc4228All0.000001
ORF1ab/nsp1079C79StGCtCA1228All0
ORF1ab/nsp1079C79CtgCtgT141141B.1.617.20.000531
ORF1ab/nsp1079C79STgcAgc129129Q.30.018709
ORF1ab/nsp1079C79CtgCtgT119119B.1.20.001048
ORF1ab/nsp1079C79CtgCtgT100100AY.40.000156
ORF1ab/nsp1079C79CtgCtgT9797B.1.1.2320.176044
ORF1ab/nsp1079C79CtgCtgT9090AY.50.001858
ORF1ab/nsp1079C79CtgCtgT4848B.1.4290.001129
ORF1ab/nsp1079C79delTGC---3838All0.000007
ORF1ab/nsp1079C79CtgCtgT3737AY.1030.00023
ORF1ab/nsp1079C79CtgCtgT3333P.10.00052
ORF1ab/nsp1079C79CtgCtgT3232AY.430.000142
ORF1ab/nsp1079C79STgcAgc2930B.1.20.000255
ORF1ab/nsp1079C79StGctCc130B.1.20.000009
ORF1ab/nsp1079C79CtgCtgT2727AY.610.002829
ORF1ab/nsp1079C79CtgCtgT2525B.10.000229
ORF1ab/nsp1079C79CtgCtgT2424B.1.3510.000713
ORF1ab/nsp1079C79del1tgCtg-2123All0.000004
ORF1ab/nsp1079C79del1tGct-c223All0
ORF1ab/nsp1079C79CtgCtgT2323B.1.4050.283951
ORF1ab/nsp1079C79CtgCtgT2222AK.21
ORF1ab/nsp1079C79CtgCtgT2121AY.440.000128
ORF1ab/nsp1079C79CtgCtgT2121B.1.1770.000277
ORF1ab/nsp1079C79CtgCtgT2020AY.30.000199
ORF1ab/nsp1079C79CtgCtgT1616B.1.4330.051118
ORF1ab/nsp1079C79CtgCtgT1515AY.250.00009
ORF1ab/nsp1079C79FtGctTc1414All0.000003
ORF1ab/nsp1079C79CtgCtgT1414C.370.001625
ORF1ab/nsp1079C79STgcAgc1313B.1.1.3170.005352
ORF1ab/nsp1079C79CtgCtgT1313B.1.1.4130.089655
ORF1ab/nsp1079C79CtgCtgT1212B.1.2430.000835
ORF1ab/nsp1079C79CtgCtgT1212B.1.438.10.001287
ORF1ab/nsp1079C79CtgCtgT1111AY.140.000968
ORF1ab/nsp1079C79CtgCtgT1111Q.10.00139
ORF1ab/nsp1079C79XtgCtgA1010All0.000002
ORF1ab/nsp1079C79CtgCtgT1010AY.260.000283
ORF1ab/nsp1079C79CtgCtgT1010B.1.10.000181
ORF1ab/nsp1079C79CtgCtgT1010B.1.2580.000665
ORF1ab/nsp1079C79CtgCtgT99AY.1020.000239
ORF1ab/nsp1079C79CtgCtgT99AY.1130.001282
ORF1ab/nsp1079C79CtgCtgT99AY.330.000601
ORF1ab/nsp1079C79CtgCtgT99AY.360.001334
ORF1ab/nsp1079C79STgcAgc99AY.440.000055
ORF1ab/nsp1079C79CtgCtgT99B.1.1.4160.008145
ORF1ab/nsp1079C79delTGC---99B.1.1.70.000008
ORF1ab/nsp1079C79CtgCtgT99B.1.5770.006186
ORF1ab/nsp1079C79YtGctAc88All0.000002
ORF1ab/nsp1079C79CtgCtgT88AY.690.001493
ORF1ab/nsp1079C79del1tgCtg-78B.1.1.70.000006
ORF1ab/nsp1079C79del1tGct-c18B.1.1.70.000001
ORF1ab/nsp1079C79delTGC---77AY.250.000042
ORF1ab/nsp1079C79CtgCtgT77AY.290.00011
ORF1ab/nsp1079C79STgcAgc77B.1.2410.005682
ORF1ab/nsp1079C79CtgCtgT77B.1.36.190.064815
ORF1ab/nsp1079C79del2tGCt--66All0.000001
ORF1ab/nsp1079C79RTgcCgc66All0.000001
ORF1ab/nsp1079C79CtgCtgT66AY.750.000336
ORF1ab/nsp1079C79CtgCtgT66AY.98.10.000291
ORF1ab/nsp1079C79STgcAgc66B.1.10.000109
ORF1ab/nsp1079C79STgcAgc66B.1.2580.000399
ORF1ab/nsp1079C79CtgCtgT55AY.270.000324
ORF1ab/nsp1079C79STgcAgc55AY.30.00005
ORF1ab/nsp1079C79CtgCtgT55AY.740.000578
ORF1ab/nsp1079C79CtgCtgT55AY.9.20.000184
ORF1ab/nsp1079C79CtgCtgT55AY.99.20.000461
ORF1ab/nsp1079C79CtgCtgT55B.1.1.630.001929
ORF1ab/nsp1079C79CtgCtgT55P.1.130.004492
ORF1ab/nsp1079C79CtgCtgT44AY.1190.000141
ORF1ab/nsp1079C79CtgCtgT44AY.3.10.000341
ORF1ab/nsp1079C79CtgCtgT44AY.420.000161
ORF1ab/nsp1079C79CtgCtgT44AY.470.000124
ORF1ab/nsp1079C79CtgCtgT44AY.5.40.001107
ORF1ab/nsp1079C79CtgCtgT44AY.75.10.000721
ORF1ab/nsp1079C79CtgCtgT44B.1.1.260.020942
ORF1ab/nsp1079C79del2tGCt--44B.1.1.70.000004
ORF1ab/nsp1079C79STgcAgc44B.1.1.70.000004
ORF1ab/nsp1079C79del1tgCtg-34B.1.1770.00004
ORF1ab/nsp1079C79del1tGct-c14B.1.1770.000013
ORF1ab/nsp1079C79CtgCtgT44C.36.30.002269
ORF1ab/nsp1079C79CtgCtgT33A.2.50.001497
ORF1ab/nsp1079C79GTgcGgc33All0.000001
ORF1ab/nsp1079C79CtgCtgT33AY.1000.000138
ORF1ab/nsp1079C79CtgCtgT33AY.1200.000112
ORF1ab/nsp1079C79CtgCtgT33AY.200.000117
ORF1ab/nsp1079C79CtgCtgT33AY.230.000209
ORF1ab/nsp1079C79CtgCtgT33AY.4.20.000065
ORF1ab/nsp1079C79CtgCtgT33AY.46.40.000494
ORF1ab/nsp1079C79CtgCtgT33AY.490.009585
ORF1ab/nsp1079C79CtgCtgT33AY.7.10.000338
ORF1ab/nsp1079C79CtgCtgT33AY.980.000237
ORF1ab/nsp1079C79CtgCtgT33B.1.1.1700.003741
ORF1ab/nsp1079C79CtgCtgT33B.1.1.5190.000119
ORF1ab/nsp1079C79XtgCtgA33B.1.1.70.000003
ORF1ab/nsp1079C79CtgCtgT33B.1.5170.001281
ORF1ab/nsp1079C79CtgCtgT33B.1.5960.000261
ORF1ab/nsp1079C79CtgCtgT33B.1.6210.000266
ORF1ab/nsp1079C79CtgCtgT33B.1.621.10.001517
ORF1ab/nsp1079C79CtgCtgT33C.360.002732
ORF1ab/nsp1079C79CtgCtgT33L.30.010638
ORF1ab/nsp1079C79STgcAgc33N.50.0053
ORF1ab/nsp1079C79TTGCACT220.111111
ORF1ab/nsp1079C79YtGctAc220.111111
ORF1ab/nsp1079C79TTGCACT22All0
ORF1ab/nsp1079C79CtgCtgT22AY.1060.00067
ORF1ab/nsp1079C79CtgCtgT22AY.1160.000574
ORF1ab/nsp1079C79CtgCtgT22AY.130.000322
ORF1ab/nsp1079C79CtgCtgT22AY.16.10.00094
ORF1ab/nsp1079C79STgcAgc22AY.250.000012
ORF1ab/nsp1079C79StGctCc12AY.40.000002
ORF1ab/nsp1079C79STgcAgc12AY.40.000002
ORF1ab/nsp1079C79del1tgCtg-22AY.4.50.000215
ORF1ab/nsp1079C79delTGC---22AY.4.50.000215
ORF1ab/nsp1079C79del1tgCtg-22AY.430.000009
ORF1ab/nsp1079C79CtgCtgT22AY.450.000243
ORF1ab/nsp1079C79CtgCtgT22AY.460.000208
ORF1ab/nsp1079C79CtgCtgT22AY.500.001599
ORF1ab/nsp1079C79CtgCtgT22AY.540.000191
ORF1ab/nsp1079C79CtgCtgT22AY.620.000871
ORF1ab/nsp1079C79CtgCtgT22AY.650.001066
ORF1ab/nsp1079C79CtgCtgT22AY.670.000929
ORF1ab/nsp1079C79FtGctTc22B.10.000018
ORF1ab/nsp1079C79delTGC---22B.10.000018
ORF1ab/nsp1079C79StGCtCA12B.1.1.3060.000438
ORF1ab/nsp1079C79StGctCc12B.1.1.3060.000438
ORF1ab/nsp1079C79CtgCtgT22B.1.1.3360.033333
ORF1ab/nsp1079C79CtgCtgT22B.1.1.4340.000697
ORF1ab/nsp1079C79FtGctTc22B.1.1.70.000002
ORF1ab/nsp1079C79CtgCtgT22B.1.110.30.001437
ORF1ab/nsp1079C79CtgCtgT22B.1.1600.000062
ORF1ab/nsp1079C79CtgCtgT22B.1.177.720.00678
ORF1ab/nsp1079C79CtgCtgT22B.1.2470.029851
ORF1ab/nsp1079C79CtgCtgT22B.1.4260.002018
ORF1ab/nsp1079C79CtgCtgT22B.1.4320.022472
ORF1ab/nsp1079C79CtgCtgT22B.1.5260.000047
ORF1ab/nsp1079C79CtgCtgT22B.1.5680.002222
ORF1ab/nsp1079C79CtgCtgT22B.1.6310.006734
ORF1ab/nsp1079C79CtgCtgT22B.1.6370.000146
ORF1ab/nsp1079C79CtgCtgT22C.140.008658
ORF1ab/nsp1079C79CtgCtgT22C.160.002121
ORF1ab/nsp1079C79XtgCtgA22D.20.00015
ORF1ab/nsp1079C79CtgCtgT22D.20.00015
ORF1ab/nsp1079C79CtgCtgT22P.1.140.000096
ORF1ab/nsp1079C79CtgCtgT22P.1.70.000639
ORF1ab/nsp1079C79CtgCtgT11A0.000387
ORF1ab/nsp1079C79CtgCtgT11A.10.000282
ORF1ab/nsp1079C79STgcAgc11A.20.000662
ORF1ab/nsp1079C79del1tgCtg-11AH.30.003802
ORF1ab/nsp1079C79WtgCtgG11All0
ORF1ab/nsp1079C79CtgCtgT11AY.1010.00049
ORF1ab/nsp1079C79CtgCtgT11AY.1110.000183
ORF1ab/nsp1079C79delTGC---11AY.1110.000183
ORF1ab/nsp1079C79delTGC---11AY.1200.000037
ORF1ab/nsp1079C79CtgCtgT11AY.1210.000135
ORF1ab/nsp1079C79STgcAgc11AY.230.00007
ORF1ab/nsp1079C79XtgCtgA11AY.250.000006
ORF1ab/nsp1079C79delTGC---11AY.30.00001
ORF1ab/nsp1079C79XtgCtgA11AY.30.00001
ORF1ab/nsp1079C79GTgcGgc11AY.30.00001
ORF1ab/nsp1079C79CtgCtgT11AY.320.000532
ORF1ab/nsp1079C79CtgCtgT11AY.340.000097
ORF1ab/nsp1079C79CtgCtgT11AY.380.000499
ORF1ab/nsp1079C79CtgCtgT11AY.390.000025
ORF1ab/nsp1079C79CtgCtgT11AY.39.10.00004
ORF1ab/nsp1079C79del1tgCtg-11AY.40.000002
ORF1ab/nsp1079C79FtGctTc11AY.4.50.000107
ORF1ab/nsp1079C79STgcAgc11AY.420.00004
ORF1ab/nsp1079C79FtGctTc11AY.430.000004
ORF1ab/nsp1079C79delTGC---11AY.430.000004
ORF1ab/nsp1079C79YtGctAc11AY.430.000004
ORF1ab/nsp1079C79RTgcCgc11AY.440.000006
ORF1ab/nsp1079C79FtGctTc11AY.440.000006
ORF1ab/nsp1079C79YtGctAc11AY.440.000006
ORF1ab/nsp1079C79delTGC---11AY.46.20.000635
ORF1ab/nsp1079C79CtgCtgT11AY.46.60.000072
ORF1ab/nsp1079C79CtgCtgT11AY.5.30.000337
ORF1ab/nsp1079C79CtgCtgT11AY.590.00053
ORF1ab/nsp1079C79CtgCtgT11AY.60.000041
ORF1ab/nsp1079C79delTGC---11AY.600.000938
ORF1ab/nsp1079C79STgcAgc11AY.610.000105
ORF1ab/nsp1079C79delTGC---11AY.670.000464
ORF1ab/nsp1079C79YtGctAc11AY.670.000464
ORF1ab/nsp1079C79STgcAgc11AY.670.000464
ORF1ab/nsp1079C79CtgCtgT11AY.790.001211
ORF1ab/nsp1079C79CtgCtgT11AY.870.000833
ORF1ab/nsp1079C79RTgcCgc11AY.9.20.000037
ORF1ab/nsp1079C79CtgCtgT11AY.920.000287
ORF1ab/nsp1079C79delTGC---11AY.990.001049
ORF1ab/nsp1079C79YtGctAc11B0.000128
ORF1ab/nsp1079C79CtgCtgT11B0.000128
ORF1ab/nsp1079C79YtGctAc11B.10.000009
ORF1ab/nsp1079C79RTgcCgc11B.10.000009
ORF1ab/nsp1079C79StGctCc11B.10.000009
ORF1ab/nsp1079C79delTGC---11B.1.1.10.000327
ORF1ab/nsp1079C79CtgCtgT11B.1.1.1640.005155
ORF1ab/nsp1079C79CtgCtgT11B.1.1.2070.001182
ORF1ab/nsp1079C79del1tgCtg-11B.1.1.2360.006897
ORF1ab/nsp1079C79CtgCtgT11B.1.1.2770.000759
ORF1ab/nsp1079C79del1tgCtg-11B.1.1.2790.001121
ORF1ab/nsp1079C79CtgCtgT11B.1.1.2840.000107
ORF1ab/nsp1079C79XtgCtgA11B.1.1.3060.000438
ORF1ab/nsp1079C79del1tgCtg-11B.1.1.3110.000358
ORF1ab/nsp1079C79CtgCtgT11B.1.1.3260.001761
ORF1ab/nsp1079C79delTGC---11B.1.1.3480.000796
ORF1ab/nsp1079C79CtgCtgT11B.1.1.3480.000796
ORF1ab/nsp1079C79FtGctTc11B.1.1.3540.004386
ORF1ab/nsp1079C79CtgCtgT11B.1.1.3760.005952
ORF1ab/nsp1079C79WtgCtgG11B.1.1.70.000001
ORF1ab/nsp1079C79CtgCtgT11B.1.1.700.000341
ORF1ab/nsp1079C79XtgCtgA11B.1.1770.000013
ORF1ab/nsp1079C79delTGC---11B.1.1770.000013
ORF1ab/nsp1079C79YtGctAc11B.1.1770.000013
ORF1ab/nsp1079C79del2tGCt--11B.1.1770.000013
ORF1ab/nsp1079C79CtgCtgT11B.1.177.110.001698
ORF1ab/nsp1079C79CtgCtgT11B.1.177.150.000631
ORF1ab/nsp1079C79del1tgCtg-11B.1.177.170.000821
ORF1ab/nsp1079C79delTGC---11B.1.177.180.00116
ORF1ab/nsp1079C79del1tgCtg-11B.1.177.690.001484
ORF1ab/nsp1079C79CtgCtgT11B.1.177.810.000189
ORF1ab/nsp1079C79CtgCtgT11B.1.177.820.000477
ORF1ab/nsp1079C79delTGC---11B.1.177.830.001481
ORF1ab/nsp1079C79RTgcCgc11B.1.20.000009
ORF1ab/nsp1079C79FtGctTc11B.1.20.000009
ORF1ab/nsp1079C79RTgcCgc11B.1.2230.002778
ORF1ab/nsp1079C79CtgCtgT11B.1.2340.000132
ORF1ab/nsp1079C79GTgcGgc11B.1.2430.00007
ORF1ab/nsp1079C79CtgCtgT11B.1.258.110.000396
ORF1ab/nsp1079C79STgcAgc11B.1.3510.00003
ORF1ab/nsp1079C79CtgCtgT11B.1.351.20.000303
ORF1ab/nsp1079C79GTgcGgc11B.1.360.000146
ORF1ab/nsp1079C79CtgCtgT11B.1.360.000146
ORF1ab/nsp1079C79CtgCtgT11B.1.36.290.000517
ORF1ab/nsp1079C79del2tGCt--11B.1.36.380.001642
ORF1ab/nsp1079C79CtgCtgT11B.1.3670.000792
ORF1ab/nsp1079C79FtGctTc11B.1.3690.000285
ORF1ab/nsp1079C79CtgCtgT11B.1.3690.000285
ORF1ab/nsp1079C79CtgCtgT11B.1.4040.001302
ORF1ab/nsp1079C79CtgCtgT11B.1.4270.00005
ORF1ab/nsp1079C79STgcAgc11B.1.438.10.000107
ORF1ab/nsp1079C79FtGctTc11B.1.4730.019231
ORF1ab/nsp1079C79CtgCtgT11B.1.5250.000113
ORF1ab/nsp1079C79CtgCtgT11B.1.5510.00129
ORF1ab/nsp1079C79CtgCtgT11B.1.5650.00081
ORF1ab/nsp1079C79FtGctTc11B.1.5760.000907
ORF1ab/nsp1079C79delTGC---11B.1.5950.000261
ORF1ab/nsp1079C79CtgCtgT11B.1.5950.000261
ORF1ab/nsp1079C79CtgCtgT11B.1.6020.006536
ORF1ab/nsp1079C79CtgCtgT11B.1.617.10.000129
ORF1ab/nsp1079C79delTGC---11B.1.617.20.000004
ORF1ab/nsp1079C79RTgcCgc11B.1.617.20.000004
ORF1ab/nsp1079C79STgcAgc11B.1.617.20.000004
ORF1ab/nsp1079C79XtgCtgA11B.1.6270.00202
ORF1ab/nsp1079C79CtgCtgT11B.1.6280.000352
ORF1ab/nsp1079C79delTGC---11B.1.6300.005236
ORF1ab/nsp1079C79CtgCtgT11B.1.80.001972
ORF1ab/nsp1079C79FtGctTc11B.1.930.000934
ORF1ab/nsp1079C79CtgCtgT11B.1.940.027027
ORF1ab/nsp1079C79CtgCtgT11B.1.960.018868
ORF1ab/nsp1079C79CtgCtgT11B.30.000831
ORF1ab/nsp1079C79CtgCtgT11B.40.002208
ORF1ab/nsp1079C79CtgCtgT11B.400.000364
ORF1ab/nsp1079C79FtGctTc11B.60.00091
ORF1ab/nsp1079C79CtgCtgT11C.1.20.004255
ORF1ab/nsp1079C79STgcAgc11P.10.000016
ORF1ab/nsp1079C79delTGC---11P.10.000016
ORF1ab/nsp1079C79CtgCtgT11P.1.120.000484
ORF1ab/nsp1079C79CtgCtgT11P.1.170.000162
ORF1ab/nsp1079C79CtgCtgT11P.1.20.001156
ORF1ab/nsp1079C79CtgCtgT11P.1.80.004785
ORF1ab/nsp1079C79CtgCtgT11P.20.000187
ORF1ab/nsp1079C79delTGC---11Q.20.000613
ORF1ab/nsp1079C79CtgCtgT11Q.80.000165
ORF1ab/nsp1079C79CtgCtgT11R.10.00009