CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp10 | 67 | S67S | S4320S | syn | tcC | tcT | 1024 | 906 | 0.884766 | 13223-13225 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 906 | 1024 | All | 0.000173 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 135 | 158 | B.1.1.7 | 0.000121 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 105 | 105 | B.1.621 | 0.009295 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 99 | 101 | AY.43 | 0.000439 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 54 | 85 | AY.4 | 0.000084 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 56 | 56 | B.1.177.54 | 0.03396 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 38 | 38 | B.1.595.3 | 1 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 29 | 29 | B.1.160 | 0.000904 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 22 | 28 | B.1 | 0.000202 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 23 | 26 | B.1.617.2 | 0.000087 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 17 | 22 | AY.44 | 0.000103 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 18 | 19 | B.1.1 | 0.000327 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 15 | 17 | B.1.2 | 0.000132 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 16 | 16 | AY.39 | 0.000395 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 8 | 15 | AY.25 | 0.000048 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 13 | 13 | B.1.177 | 0.000171 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 11 | 11 | B.1.221 | 0.000781 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 10 | 10 | P.1 | 0.000158 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 9 | 9 | AY.121 | 0.001218 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 9 | 9 | AY.4.5 | 0.000967 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 7 | 9 | AY.61 | 0.000733 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 7 | 8 | AY.118 | 0.000439 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 4 | 7 | AY.33 | 0.000267 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 5 | 5 | A | 0.001935 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 2 | 5 | AY.103 | 0.000012 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 5 | 5 | B.1.177.81 | 0.000947 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 5 | 5 | B.1.438.1 | 0.000536 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 2 | 4 | B.1.429 | 0.000047 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 2 | 3 | AY.116 | 0.000574 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 2 | 3 | B | 0.000256 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 3 | B.1.160.22 | 0.006757 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 3 | 3 | B.1.380 | 0.019868 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 3 | 3 | P.1.4 | 0.00293 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 2 | AY.120 | 0.000037 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 2 | 2 | B.1.177.5 | 0.002484 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 2 | B.1.234 | 0.000132 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 2 | 2 | P.7 | 0.008734 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.1.12 | 0.007463 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.12 | 0.008 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.160.12 | 0.00641 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.221.2 | 0.004016 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.289 | 0.00266 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.35 | 0.008475 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | C.23 | 0.005814 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | L.3 | 0.003546 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp10 | 67 | S67S | tcC | tcT | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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