CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp10 | 51 | T51I | T4304I | nonsyn | aCt | aTt | 6389 | 6389 | 1 | 13175-13177 |
ORF1ab/nsp10 | 51 | T51N | T4304N | nonsyn | aCt | aAt | 169 | 169 | 1 | 13175-13177 |
ORF1ab/nsp10 | 51 | T51T | T4304T | syn | acT | acA | 163 | 64 | 0.392638 | 13175-13177 |
ORF1ab/nsp10 | 51 | T51T | T4304T | syn | acT | acC | 163 | 58 | 0.355828 | 13175-13177 |
ORF1ab/nsp10 | 51 | T51T | T4304T | syn | acT | acG | 163 | 41 | 0.251534 | 13175-13177 |
ORF1ab/nsp10 | 51 | T51A | T4304A | nonsyn | Act | Gct | 86 | 86 | 1 | 13175-13177 |
ORF1ab/nsp10 | 51 | T51del | T4304del | del | ACT | --- | 18 | 18 | 1 | 13175-13177 |
ORF1ab/nsp10 | 51 | T51S | T4304S | nonsyn | aCt | aGt | 13 | 10 | 0.769231 | 13175-13177 |
ORF1ab/nsp10 | 51 | T51S | T4304S | nonsyn | Act | Tct | 13 | 2 | 0.153846 | 13175-13177 |
ORF1ab/nsp10 | 51 | T51S | T4304S | nonsyn | aCT | aGC | 13 | 1 | 0.0769231 | 13175-13177 |
ORF1ab/nsp10 | 51 | T51F | T4304F | nonsyn | ACt | TTt | 2 | 2 | 1 | 13175-13177 |
ORF1ab/nsp10 | 51 | T51L | T4304L | nonsyn | ACT | TTA | 2 | 2 | 1 | 13175-13177 |
ORF1ab/nsp10 | 51 | T51P | T4304P | nonsyn | Act | Cct | 1 | 1 | 1 | 13175-13177 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 6389 | 6389 | All | 0.001222 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1526 | 1526 | B.1.1.7 | 0.001366 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 869 | 869 | B.1.214.2 | 0.520983 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 544 | 544 | AY.4 | 0.000847 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 437 | 437 | AY.44 | 0.00266 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 432 | 432 | B.1.36.27 | 0.329771 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 279 | 279 | B.1.1.519 | 0.011079 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 169 | 169 | All | 0.000032 |
ORF1ab/nsp10 | 51 | T51T | acT | acA | 64 | 163 | All | 0.000012 |
ORF1ab/nsp10 | 51 | T51T | acT | acC | 58 | 163 | All | 0.000011 |
ORF1ab/nsp10 | 51 | T51T | acT | acG | 41 | 163 | All | 0.000008 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 135 | 135 | B.1.526 | 0.003173 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 127 | 127 | AY.103 | 0.000789 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 117 | 117 | B.1.617.2 | 0.000441 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 110 | 110 | AY.3 | 0.001094 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 105 | 105 | AY.29 | 0.001656 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 100 | 100 | AY.25 | 0.000601 |
ORF1ab/nsp10 | 51 | T51A | Act | Gct | 86 | 86 | All | 0.000016 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 86 | 86 | B.1.2 | 0.000757 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 84 | 84 | AY.43 | 0.000372 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 76 | 76 | AY.46 | 0.00791 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 70 | 70 | B.1.36 | 0.010213 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 67 | 67 | B.1.429 | 0.001576 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 53 | 53 | P.1 | 0.000835 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 51 | 51 | B.1.351 | 0.001516 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 50 | 50 | AY.75 | 0.002801 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 48 | 48 | AY.47 | 0.001493 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 44 | 44 | B.1 | 0.000403 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 41 | 41 | B.1.177 | 0.00054 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 40 | 40 | AY.100 | 0.00184 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 40 | 40 | B.1.427 | 0.00202 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 39 | 39 | AY.4.4 | 0.015957 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 37 | 37 | B.1.177.2 | 0.168182 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 35 | 35 | B.1.177.60 | 0.007645 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 30 | 30 | AY.102 | 0.000795 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 29 | 29 | B.1.617.2 | 0.000109 |
ORF1ab/nsp10 | 51 | T51A | Act | Gct | 28 | 28 | B.1.1.7 | 0.000025 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 25 | 25 | Q.1 | 0.003158 |
ORF1ab/nsp10 | 51 | T51T | acT | acA | 24 | 24 | AP.1 | 0.036036 |
ORF1ab/nsp10 | 51 | T51T | acT | acC | 16 | 24 | B.1.1.7 | 0.000014 |
ORF1ab/nsp10 | 51 | T51T | acT | acG | 5 | 24 | B.1.1.7 | 0.000004 |
ORF1ab/nsp10 | 51 | T51T | acT | acA | 3 | 24 | B.1.1.7 | 0.000003 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 23 | 23 | AY.4.2 | 0.000499 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 23 | 23 | B.1.243 | 0.0016 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 21 | 21 | AY.71 | 0.009976 |
ORF1ab/nsp10 | 51 | T51T | acT | acG | 21 | 21 | B.1.160 | 0.000655 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 20 | 20 | B.1.1 | 0.000363 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 20 | 20 | B.1.565 | 0.016207 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 19 | 19 | AY.75.1 | 0.003426 |
ORF1ab/nsp10 | 51 | T51del | ACT | --- | 18 | 18 | All | 0.000003 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 17 | 17 | AY.103 | 0.000106 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 17 | 17 | B.1.637 | 0.001242 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 16 | 16 | AY.5 | 0.00033 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 15 | 15 | AY.4.2 | 0.000325 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 15 | 15 | B.1.564 | 0.006388 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 14 | 14 | AY.39 | 0.000346 |
ORF1ab/nsp10 | 51 | T51A | Act | Gct | 14 | 14 | AY.43 | 0.000062 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 14 | 14 | AY.43 | 0.000062 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 14 | 14 | B.1.177.86 | 0.002568 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 14 | 14 | B.1.621 | 0.001239 |
ORF1ab/nsp10 | 51 | T51S | aCt | aGt | 10 | 13 | All | 0.000002 |
ORF1ab/nsp10 | 51 | T51S | Act | Tct | 2 | 13 | All | 0 |
ORF1ab/nsp10 | 51 | T51S | aCT | aGC | 1 | 13 | All | 0 |
ORF1ab/nsp10 | 51 | T51T | acT | acA | 8 | 13 | B.1.258 | 0.000532 |
ORF1ab/nsp10 | 51 | T51T | acT | acC | 5 | 13 | B.1.258 | 0.000333 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 12 | 12 | AY.119 | 0.000424 |
ORF1ab/nsp10 | 51 | T51T | acT | acA | 8 | 12 | AY.25 | 0.000048 |
ORF1ab/nsp10 | 51 | T51T | acT | acC | 3 | 12 | AY.25 | 0.000018 |
ORF1ab/nsp10 | 51 | T51T | acT | acG | 1 | 12 | AY.25 | 0.000006 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 12 | 12 | AY.34 | 0.001164 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 11 | 11 | AY.98 | 0.000869 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 11 | 11 | B.1.596 | 0.000959 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 11 | 11 | B.1.628 | 0.003876 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 11 | 11 | P.1.1 | 0.003494 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 10 | 10 | AY.118 | 0.000626 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 10 | 10 | B.1.433 | 0.031949 |
ORF1ab/nsp10 | 51 | T51A | Act | Gct | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 9 | 9 | AY.20 | 0.00035 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 9 | 9 | AY.26 | 0.000255 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 9 | 9 | AY.4.2.1 | 0.001341 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 9 | 9 | AY.45 | 0.001095 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 9 | 9 | B.1.232 | 0.004836 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 8 | 8 | AY.23 | 0.000558 |
ORF1ab/nsp10 | 51 | T51A | Act | Gct | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 8 | 8 | AY.6 | 0.000329 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 8 | 8 | AY.9.2 | 0.000294 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 7 | 7 | AY.120 | 0.00026 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 7 | 7 | AY.39.1 | 0.000277 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 7 | 7 | B.1.177.12 | 0.001062 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 7 | 7 | B.1.177.82 | 0.003341 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 7 | 7 | B.1.422 | 0.005686 |
ORF1ab/nsp10 | 51 | T51S | aCt | aGt | 7 | 7 | B.1.561 | 0.002779 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 6 | 6 | AY.113 | 0.000854 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 6 | 6 | AY.3.1 | 0.000512 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 6 | 6 | AY.46.4 | 0.000987 |
ORF1ab/nsp10 | 51 | T51A | Act | Gct | 6 | 6 | B | 0.000767 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 6 | 6 | B.1.279 | 0.003082 |
ORF1ab/nsp10 | 51 | T51T | acT | acG | 3 | 6 | P.1 | 0.000047 |
ORF1ab/nsp10 | 51 | T51T | acT | acC | 2 | 6 | P.1 | 0.000032 |
ORF1ab/nsp10 | 51 | T51T | acT | acA | 1 | 6 | P.1 | 0.000016 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 6 | 6 | Q.3 | 0.00087 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 5 | 5 | B.1.1.37 | 0.000964 |
ORF1ab/nsp10 | 51 | T51T | acT | acG | 5 | 5 | B.1.1.434 | 0.001743 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 5 | 5 | B.1.177.43 | 0.007386 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 5 | 5 | B.1.214.3 | 0.035714 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 4 | 4 | 0.222222 | |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 4 | 4 | AY.106 | 0.00134 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 4 | 4 | AY.13 | 0.000644 |
ORF1ab/nsp10 | 51 | T51T | acT | acG | 2 | 4 | AY.3 | 0.00002 |
ORF1ab/nsp10 | 51 | T51T | acT | acA | 2 | 4 | AY.3 | 0.00002 |
ORF1ab/nsp10 | 51 | T51T | acT | acC | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 4 | 4 | B.1.1.352 | 0.125 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp10 | 51 | T51del | ACT | --- | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 4 | 4 | B.1.630 | 0.020942 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | AU.1 | 0.003797 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | AY.1 | 0.001187 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | AY.24 | 0.001293 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | AY.34.1 | 0.00153 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp10 | 51 | T51T | acT | acC | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp10 | 51 | T51T | acT | acC | 2 | 3 | AY.44 | 0.000012 |
ORF1ab/nsp10 | 51 | T51T | acT | acG | 1 | 3 | AY.44 | 0.000006 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | AY.46.3 | 0.002801 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | AY.90 | 0.002053 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | B | 0.000383 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | B.1.1.176 | 0.001318 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | B.1.1.316 | 0.002775 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | B.1.1.486 | 0.004732 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | B.1.177.35 | 0.002073 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | B.1.177.44 | 0.001557 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | B.1.177.8 | 0.002257 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | B.1.241 | 0.002435 |
ORF1ab/nsp10 | 51 | T51T | acT | acC | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | B.1.577 | 0.002062 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | B.1.582 | 0.001472 |
ORF1ab/nsp10 | 51 | T51T | acT | acC | 2 | 3 | B.1.617.2 | 0.000008 |
ORF1ab/nsp10 | 51 | T51T | acT | acA | 1 | 3 | B.1.617.2 | 0.000004 |
ORF1ab/nsp10 | 51 | T51T | acT | acC | 2 | 3 | B.1.637 | 0.000146 |
ORF1ab/nsp10 | 51 | T51T | acT | acA | 1 | 3 | B.1.637 | 0.000073 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp10 | 51 | T51L | ACT | TTA | 2 | 2 | 0.111111 | |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 2 | 2 | 0.111111 | |
ORF1ab/nsp10 | 51 | T51del | ACT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp10 | 51 | T51F | ACt | TTt | 2 | 2 | 0.111111 | |
ORF1ab/nsp10 | 51 | T51L | ACT | TTA | 2 | 2 | All | 0 |
ORF1ab/nsp10 | 51 | T51F | ACt | TTt | 2 | 2 | All | 0 |
ORF1ab/nsp10 | 51 | T51A | Act | Gct | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp10 | 51 | T51T | acT | acG | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp10 | 51 | T51A | Act | Gct | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp10 | 51 | T51A | Act | Gct | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp10 | 51 | T51T | acT | acC | 1 | 2 | AY.4.2 | 0.000022 |
ORF1ab/nsp10 | 51 | T51T | acT | acA | 1 | 2 | AY.4.2 | 0.000022 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp10 | 51 | T51T | acT | acG | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp10 | 51 | T51T | acT | acC | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp10 | 51 | T51T | acT | acC | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp10 | 51 | T51T | acT | acC | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp10 | 51 | T51A | Act | Gct | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp10 | 51 | T51T | acT | acC | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp10 | 51 | T51T | acT | acA | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp10 | 51 | T51A | Act | Gct | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 2 | 2 | B.1.1.174 | 0.006757 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 2 | 2 | B.1.1.196 | 0.011429 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp10 | 51 | T51del | ACT | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp10 | 51 | T51T | acT | acC | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp10 | 51 | T51A | Act | Gct | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp10 | 51 | T51T | acT | acA | 2 | 2 | B.1.551 | 0.002581 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 2 | 2 | B.1.635 | 0.035088 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp10 | 51 | T51T | acT | acC | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 2 | 2 | D.5 | 0.00995 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | AH.2 | 0.012048 |
ORF1ab/nsp10 | 51 | T51P | Act | Cct | 1 | 1 | All | 0 |
ORF1ab/nsp10 | 51 | T51A | Act | Gct | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp10 | 51 | T51T | acT | acC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp10 | 51 | T51S | aCt | aGt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp10 | 51 | T51T | acT | acA | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp10 | 51 | T51T | acT | acA | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp10 | 51 | T51del | ACT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp10 | 51 | T51T | acT | acC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp10 | 51 | T51del | ACT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp10 | 51 | T51S | Act | Tct | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp10 | 51 | T51P | Act | Cct | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp10 | 51 | T51T | acT | acA | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp10 | 51 | T51T | acT | acA | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp10 | 51 | T51del | ACT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp10 | 51 | T51S | aCt | aGt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp10 | 51 | T51S | aCT | aGC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp10 | 51 | T51A | Act | Gct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp10 | 51 | T51T | acT | acC | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp10 | 51 | T51T | acT | acA | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp10 | 51 | T51T | acT | acA | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp10 | 51 | T51del | ACT | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp10 | 51 | T51A | Act | Gct | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp10 | 51 | T51del | ACT | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp10 | 51 | T51T | acT | acA | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp10 | 51 | T51del | ACT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp10 | 51 | T51S | aCt | aGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp10 | 51 | T51T | acT | acA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp10 | 51 | T51del | ACT | --- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp10 | 51 | T51T | acT | acA | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.1.163 | 0.007634 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.1.175 | 0.076923 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp10 | 51 | T51del | ACT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp10 | 51 | T51S | Act | Tct | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp10 | 51 | T51A | Act | Gct | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp10 | 51 | T51T | acT | acC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp10 | 51 | T51T | acT | acC | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp10 | 51 | T51A | Act | Gct | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp10 | 51 | T51del | ACT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.289 | 0.00266 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.424 | 0.008065 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.428.2 | 0.033333 |
ORF1ab/nsp10 | 51 | T51A | Act | Gct | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.505 | 0.004386 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp10 | 51 | T51A | Act | Gct | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp10 | 51 | T51T | acT | acA | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.615 | 0.04 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp10 | 51 | T51T | acT | acA | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp10 | 51 | T51A | Act | Gct | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp10 | 51 | T51del | ACT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp10 | 51 | T51T | acT | acA | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp10 | 51 | T51N | aCt | aAt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp10 | 51 | T51I | aCt | aTt | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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