CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp10 : CodonNum = 48

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1048H48HH4301HsyncaCcaT1535315353113166-13168
ORF1ab/nsp1048H48YH4301YnonsynCacTac952952113166-13168
ORF1ab/nsp1048H48RH4301RnonsyncAccGc3636113166-13168
ORF1ab/nsp1048H48delH4301deldelCAC---1414113166-13168
ORF1ab/nsp1048H48NH4301NnonsynCacAac88113166-13168
ORF1ab/nsp1048H48LH4301LnonsyncACcTT44113166-13168
ORF1ab/nsp1048H48QH4301QnonsyncaCcaA320.66666713166-13168
ORF1ab/nsp1048H48QH4301QnonsyncaCcaG310.33333313166-13168
ORF1ab/nsp1048H48KH4301KnonsynCaCAaA22113166-13168
ORF1ab/nsp1048H48del2H4301del2delCAC--T22113166-13168
ORF1ab/nsp1048H48PH4301PnonsyncACcCT22113166-13168
ORF1ab/nsp1048H48SH4301SnonsynCAcAGc11113166-13168

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1048H48HcaCcaT1535315353All0.002936
ORF1ab/nsp1048H48HcaCcaT70087008AY.1210.948309
ORF1ab/nsp1048H48HcaCcaT51905190B.1.617.20.019543
ORF1ab/nsp1048H48YCacTac952952All0.000182
ORF1ab/nsp1048H48YCacTac465465B.1.617.20.001751
ORF1ab/nsp1048H48HcaCcaT426426AY.430.001887
ORF1ab/nsp1048H48YCacTac244244AY.610.025566
ORF1ab/nsp1048H48HcaCcaT185185AY.390.004572
ORF1ab/nsp1048H48HcaCcaT162162B.1.1.70.000145
ORF1ab/nsp1048H48HcaCcaT144144AY.1200.005354
ORF1ab/nsp1048H48HcaCcaT134134AY.1050.086174
ORF1ab/nsp1048H48HcaCcaT128128AY.440.000779
ORF1ab/nsp1048H48HcaCcaT128128AY.750.007171
ORF1ab/nsp1048H48HcaCcaT125125AY.1020.003314
ORF1ab/nsp1048H48HcaCcaT108108AY.1030.000671
ORF1ab/nsp1048H48HcaCcaT103103B.1.36.120.990385
ORF1ab/nsp1048H48HcaCcaT8383AY.420.003339
ORF1ab/nsp1048H48HcaCcaT8181AY.330.005409
ORF1ab/nsp1048H48HcaCcaT6666AY.40.000103
ORF1ab/nsp1048H48HcaCcaT6666AY.98.10.003196
ORF1ab/nsp1048H48HcaCcaT6565AY.46.20.041296
ORF1ab/nsp1048H48HcaCcaT5252B.1.1.1771
ORF1ab/nsp1048H48HcaCcaT5151AY.980.004029
ORF1ab/nsp1048H48HcaCcaT5050AY.1170.004226
ORF1ab/nsp1048H48HcaCcaT4848AY.470.001493
ORF1ab/nsp1048H48HcaCcaT4545AY.340.004363
ORF1ab/nsp1048H48HcaCcaT4545B.1.5250.005092
ORF1ab/nsp1048H48HcaCcaT4444AY.690.008214
ORF1ab/nsp1048H48RcAccGc3636All0.000007
ORF1ab/nsp1048H48HcaCcaT3636AY.250.000217
ORF1ab/nsp1048H48HcaCcaT3535AY.1060.011721
ORF1ab/nsp1048H48HcaCcaT3333AY.450.004016
ORF1ab/nsp1048H48YCacTac3333B.1.1.70.00003
ORF1ab/nsp1048H48HcaCcaT3232AY.34.10.016318
ORF1ab/nsp1048H48HcaCcaT2626AY.230.001813
ORF1ab/nsp1048H48HcaCcaT2525B.10.000229
ORF1ab/nsp1048H48HcaCcaT2424AY.50.000496
ORF1ab/nsp1048H48HcaCcaT2121AY.1180.001316
ORF1ab/nsp1048H48HcaCcaT1919AY.210.036053
ORF1ab/nsp1048H48HcaCcaT1919AY.840.008311
ORF1ab/nsp1048H48HcaCcaT1818AY.1100.002028
ORF1ab/nsp1048H48HcaCcaT1717AY.5.30.005735
ORF1ab/nsp1048H48HcaCcaT1616AY.120.10.005136
ORF1ab/nsp1048H48YCacTac1515AY.75.10.002705
ORF1ab/nsp1048H48delCAC---1414All0.000003
ORF1ab/nsp1048H48HcaCcaT1414AY.460.001457
ORF1ab/nsp1048H48HcaCcaT1414AY.920.004022
ORF1ab/nsp1048H48HcaCcaT1313AY.1190.000459
ORF1ab/nsp1048H48YCacTac1313AY.3.10.001108
ORF1ab/nsp1048H48HcaCcaT1313B.1.1.5190.000516
ORF1ab/nsp1048H48HcaCcaT1313B.1.20.000114
ORF1ab/nsp1048H48YCacTac1313B.1.4000.005577
ORF1ab/nsp1048H48HcaCcaT1212AY.120.003793
ORF1ab/nsp1048H48HcaCcaT1212AY.320.00639
ORF1ab/nsp1048H48HcaCcaT1212AY.770.013529
ORF1ab/nsp1048H48HcaCcaT1212P.10.000189
ORF1ab/nsp1048H48YCacTac1111AY.100.005829
ORF1ab/nsp1048H48RcAccGc1010AY.1130.001424
ORF1ab/nsp1048H48HcaCcaT1010AY.290.000158
ORF1ab/nsp1048H48YCacTac1010AY.40.000016
ORF1ab/nsp1048H48YCacTac1010AY.420.000402
ORF1ab/nsp1048H48HcaCcaT1010AY.46.40.001645
ORF1ab/nsp1048H48HcaCcaT1010AY.70.00196
ORF1ab/nsp1048H48HcaCcaT1010AY.780.015408
ORF1ab/nsp1048H48HcaCcaT1010AY.930.002731
ORF1ab/nsp1048H48HcaCcaT99AY.1000.000414
ORF1ab/nsp1048H48HcaCcaT99AY.4.50.000967
ORF1ab/nsp1048H48NCacAac88All0.000002
ORF1ab/nsp1048H48YCacTac88AY.130.001288
ORF1ab/nsp1048H48YCacTac88AY.710.0038
ORF1ab/nsp1048H48HcaCcaT88AY.740.000925
ORF1ab/nsp1048H48HcaCcaT88AY.9.20.000294
ORF1ab/nsp1048H48HcaCcaT88AY.900.005476
ORF1ab/nsp1048H48YCacTac88B.10.000073
ORF1ab/nsp1048H48YCacTac88B.1.20.00007
ORF1ab/nsp1048H48HcaCcaT77AY.1110.001282
ORF1ab/nsp1048H48HcaCcaT77AY.1160.002007
ORF1ab/nsp1048H48YCacTac77AY.30.00007
ORF1ab/nsp1048H48HcaCcaT77AY.410.002058
ORF1ab/nsp1048H48HcaCcaT77AY.820.009498
ORF1ab/nsp1048H48HcaCcaT77AY.950.005327
ORF1ab/nsp1048H48YCacTac77B.1.1.2140.000388
ORF1ab/nsp1048H48HcaCcaT66AY.130.000966
ORF1ab/nsp1048H48HcaCcaT66AY.140.000528
ORF1ab/nsp1048H48HcaCcaT66AY.3.10.000512
ORF1ab/nsp1048H48HcaCcaT66AY.46.10.00616
ORF1ab/nsp1048H48HcaCcaT66AY.99.20.000553
ORF1ab/nsp1048H48RcAccGc66B.1.1.70.000005
ORF1ab/nsp1048H48YCacTac66B.1.36.380.009852
ORF1ab/nsp1048H48HcaCcaT66B.1.4290.000141
ORF1ab/nsp1048H48HcaCcaT66C.370.000696
ORF1ab/nsp1048H48HcaCcaT55AY.1080.005513
ORF1ab/nsp1048H48YCacTac55AY.440.00003
ORF1ab/nsp1048H48HcaCcaT55AY.710.002375
ORF1ab/nsp1048H48HcaCcaT55AY.880.004421
ORF1ab/nsp1048H48HcaCcaT55AY.910.003652
ORF1ab/nsp1048H48HcaCcaT55AY.990.005247
ORF1ab/nsp1048H48HcaCcaT55B.1.10.000091
ORF1ab/nsp1048H48HcaCcaT55B.1.1600.000156
ORF1ab/nsp1048H48HcaCcaT55B.1.177.560.003338
ORF1ab/nsp1048H48LcACcTT440.222222
ORF1ab/nsp1048H48LcACcTT44All0.000001
ORF1ab/nsp1048H48YCacTac44AY.1030.000025
ORF1ab/nsp1048H48HcaCcaT44AY.1040.007937
ORF1ab/nsp1048H48HcaCcaT44AY.110.005355
ORF1ab/nsp1048H48HcaCcaT44AY.270.000259
ORF1ab/nsp1048H48HcaCcaT44AY.400.003857
ORF1ab/nsp1048H48HcaCcaT44AY.510.003636
ORF1ab/nsp1048H48HcaCcaT44AY.800.004515
ORF1ab/nsp1048H48HcaCcaT44AY.860.00332
ORF1ab/nsp1048H48HcaCcaT44B.1.1770.000053
ORF1ab/nsp1048H48YCacTac44B.1.5260.000094
ORF1ab/nsp1048H48HcaCcaT44B.1.5260.000094
ORF1ab/nsp1048H48RcAccGc44C.370.000464
ORF1ab/nsp1048H48HcaCcaT33A.2.50.001497
ORF1ab/nsp1048H48QcaCcaA23All0
ORF1ab/nsp1048H48QcaCcaG13All0
ORF1ab/nsp1048H48YCacTac33AY.1080.003308
ORF1ab/nsp1048H48HcaCcaT33AY.1140.000693
ORF1ab/nsp1048H48HcaCcaT33AY.170.02459
ORF1ab/nsp1048H48HcaCcaT33AY.30.00003
ORF1ab/nsp1048H48YCacTac33AY.470.000093
ORF1ab/nsp1048H48HcaCcaT33AY.5.40.00083
ORF1ab/nsp1048H48HcaCcaT33AY.620.001307
ORF1ab/nsp1048H48HcaCcaT33AY.870.002498
ORF1ab/nsp1048H48RcAccGc33AY.980.000237
ORF1ab/nsp1048H48delCAC---33B.1.1.70.000003
ORF1ab/nsp1048H48RcAccGc33B.1.20.000026
ORF1ab/nsp1048H48HcaCcaT33B.1.5950.000783
ORF1ab/nsp1048H48HcaCcaT33B.1.5960.000261
ORF1ab/nsp1048H48HcaCcaT33B.1.617.10.000387
ORF1ab/nsp1048H48YCacTac33B.1.6370.000219
ORF1ab/nsp1048H48YCacTac33C.370.000348
ORF1ab/nsp1048H48YCacTac33P.10.000047
ORF1ab/nsp1048H48HcaCcaT33P.1.140.000143
ORF1ab/nsp1048H48PcACcCT220.111111
ORF1ab/nsp1048H48KCaCAaA220.111111
ORF1ab/nsp1048H48del2CAC--T220.111111
ORF1ab/nsp1048H48PcACcCT22All0
ORF1ab/nsp1048H48del2CAC--T22All0
ORF1ab/nsp1048H48KCaCAaA22All0
ORF1ab/nsp1048H48YCacTac22AY.190.002281
ORF1ab/nsp1048H48HcaCcaT22AY.190.002281
ORF1ab/nsp1048H48HcaCcaT22AY.200.000078
ORF1ab/nsp1048H48HcaCcaT22AY.260.000057
ORF1ab/nsp1048H48HcaCcaT22AY.350.000466
ORF1ab/nsp1048H48HcaCcaT22AY.360.000296
ORF1ab/nsp1048H48RcAccGc22AY.40.000003
ORF1ab/nsp1048H48YCacTac22AY.4.20.000043
ORF1ab/nsp1048H48YCacTac22AY.410.000588
ORF1ab/nsp1048H48NCacAac22AY.430.000009
ORF1ab/nsp1048H48YCacTac22AY.430.000009
ORF1ab/nsp1048H48HcaCcaT22AY.46.60.000144
ORF1ab/nsp1048H48HcaCcaT22AY.500.001599
ORF1ab/nsp1048H48HcaCcaT22AY.520.001629
ORF1ab/nsp1048H48YCacTac22AY.540.000191
ORF1ab/nsp1048H48HcaCcaT22AY.60.000082
ORF1ab/nsp1048H48HcaCcaT22AY.640.00119
ORF1ab/nsp1048H48HcaCcaT22AY.670.000929
ORF1ab/nsp1048H48HcaCcaT22AY.75.10.000361
ORF1ab/nsp1048H48HcaCcaT22AY.830.003448
ORF1ab/nsp1048H48HcaCcaT22AY.9.10.000167
ORF1ab/nsp1048H48YCacTac22AY.980.000158
ORF1ab/nsp1048H48HcaCcaT22B0.000256
ORF1ab/nsp1048H48YCacTac22B.1.10.000036
ORF1ab/nsp1048H48YCacTac22B.1.1.2080.02439
ORF1ab/nsp1048H48YCacTac22B.1.1.2910.001485
ORF1ab/nsp1048H48YCacTac22B.1.1.5230.003125
ORF1ab/nsp1048H48YCacTac22B.1.1770.000026
ORF1ab/nsp1048H48delCAC---22B.1.1770.000026
ORF1ab/nsp1048H48YCacTac22B.1.2210.000142
ORF1ab/nsp1048H48HcaCcaT22B.1.2580.000133
ORF1ab/nsp1048H48YCacTac22B.1.3490.00143
ORF1ab/nsp1048H48HcaCcaT22B.1.3510.000059
ORF1ab/nsp1048H48HcaCcaT22B.1.3690.00057
ORF1ab/nsp1048H48HcaCcaT22B.1.4270.000101
ORF1ab/nsp1048H48YCacTac22B.1.4290.000047
ORF1ab/nsp1048H48HcaCcaT22B.1.4780.023529
ORF1ab/nsp1048H48HcaCcaT22B.1.6230.001073
ORF1ab/nsp1048H48HcaCcaT22P.70.008734
ORF1ab/nsp1048H48YCacTac11AD.20.000219
ORF1ab/nsp1048H48HcaCcaT11AE.80.000489
ORF1ab/nsp1048H48SCAcAGc11All0
ORF1ab/nsp1048H48HcaCcaT11AY.1010.00049
ORF1ab/nsp1048H48NCacAac11AY.1020.000027
ORF1ab/nsp1048H48NCacAac11AY.1030.000006
ORF1ab/nsp1048H48HcaCcaT11AY.1090.00074
ORF1ab/nsp1048H48HcaCcaT11AY.1130.000142
ORF1ab/nsp1048H48HcaCcaT11AY.116.10.000311
ORF1ab/nsp1048H48YCacTac11AY.1180.000063
ORF1ab/nsp1048H48YCacTac11AY.1190.000035
ORF1ab/nsp1048H48YCacTac11AY.250.000006
ORF1ab/nsp1048H48delCAC---11AY.250.000006
ORF1ab/nsp1048H48RcAccGc11AY.260.000028
ORF1ab/nsp1048H48YCacTac11AY.290.000016
ORF1ab/nsp1048H48HcaCcaT11AY.29.10.000221
ORF1ab/nsp1048H48YCacTac11AY.330.000067
ORF1ab/nsp1048H48HcaCcaT11AY.370.000316
ORF1ab/nsp1048H48NCacAac11AY.390.000025
ORF1ab/nsp1048H48HcaCcaT11AY.39.10.00004
ORF1ab/nsp1048H48delCAC---11AY.40.000002
ORF1ab/nsp1048H48HcaCcaT11AY.4.2.10.000149
ORF1ab/nsp1048H48HcaCcaT11AY.4.30.000842
ORF1ab/nsp1048H48QcaCcaA11AY.430.000004
ORF1ab/nsp1048H48SCAcAGc11AY.440.000006
ORF1ab/nsp1048H48RcAccGc11AY.46.60.000072
ORF1ab/nsp1048H48YCacTac11AY.480.000465
ORF1ab/nsp1048H48YCacTac11AY.50.000021
ORF1ab/nsp1048H48YCacTac11AY.500.000799
ORF1ab/nsp1048H48HcaCcaT11AY.540.000095
ORF1ab/nsp1048H48HcaCcaT11AY.550.000917
ORF1ab/nsp1048H48HcaCcaT11AY.570.000656
ORF1ab/nsp1048H48HcaCcaT11AY.580.000907
ORF1ab/nsp1048H48HcaCcaT11AY.590.00053
ORF1ab/nsp1048H48delCAC---11AY.600.000938
ORF1ab/nsp1048H48HcaCcaT11AY.660.00107
ORF1ab/nsp1048H48YCacTac11AY.670.000464
ORF1ab/nsp1048H48NCacAac11AY.690.000187
ORF1ab/nsp1048H48HcaCcaT11AY.7.10.000113
ORF1ab/nsp1048H48HcaCcaT11AY.700.000209
ORF1ab/nsp1048H48delCAC---11AY.720.001361
ORF1ab/nsp1048H48HcaCcaT11AY.730.000665
ORF1ab/nsp1048H48YCacTac11AY.750.000056
ORF1ab/nsp1048H48HcaCcaT11AY.80.000606
ORF1ab/nsp1048H48YCacTac11AY.840.000437
ORF1ab/nsp1048H48NCacAac11AY.850.000427
ORF1ab/nsp1048H48YCacTac11AY.90.000068
ORF1ab/nsp1048H48YCacTac11AY.920.000287
ORF1ab/nsp1048H48HcaCcaT11AY.960.002075
ORF1ab/nsp1048H48HcaCcaT11AY.99.10.001553
ORF1ab/nsp1048H48YCacTac11AY.99.20.000092
ORF1ab/nsp1048H48NCacAac11B.10.000009
ORF1ab/nsp1048H48QcaCcaG11B.10.000009
ORF1ab/nsp1048H48delCAC---11B.1.1.10.000327
ORF1ab/nsp1048H48HcaCcaT11B.1.1.2220.000204
ORF1ab/nsp1048H48HcaCcaT11B.1.1.2310.003096
ORF1ab/nsp1048H48HcaCcaT11B.1.1.2430.004082
ORF1ab/nsp1048H48HcaCcaT11B.1.1.2690.001353
ORF1ab/nsp1048H48HcaCcaT11B.1.1.280.000311
ORF1ab/nsp1048H48HcaCcaT11B.1.1.2840.000107
ORF1ab/nsp1048H48YCacTac11B.1.1.2840.000107
ORF1ab/nsp1048H48YCacTac11B.1.1.3170.000412
ORF1ab/nsp1048H48delCAC---11B.1.1.3480.000796
ORF1ab/nsp1048H48RcAccGc11B.1.1.3720.000689
ORF1ab/nsp1048H48HcaCcaT11B.1.1.390.00051
ORF1ab/nsp1048H48RcAccGc11B.1.1.470.005348
ORF1ab/nsp1048H48YCacTac11B.1.1.5190.00004
ORF1ab/nsp1048H48HcaCcaT11B.1.1.700.000341
ORF1ab/nsp1048H48YCacTac11B.1.1.890.006061
ORF1ab/nsp1048H48HcaCcaT11B.1.1110.001175
ORF1ab/nsp1048H48YCacTac11B.1.1180.006711
ORF1ab/nsp1048H48HcaCcaT11B.1.1570.002985
ORF1ab/nsp1048H48HcaCcaT11B.1.160.320.004292
ORF1ab/nsp1048H48QcaCcaA11B.1.1770.000013
ORF1ab/nsp1048H48RcAccGc11B.1.1770.000013
ORF1ab/nsp1048H48HcaCcaT11B.1.177.40.000211
ORF1ab/nsp1048H48HcaCcaT11B.1.177.810.000189
ORF1ab/nsp1048H48delCAC---11B.1.177.830.001481
ORF1ab/nsp1048H48delCAC---11B.1.20.000009
ORF1ab/nsp1048H48HcaCcaT11B.1.2060.000816
ORF1ab/nsp1048H48HcaCcaT11B.1.2100.002132
ORF1ab/nsp1048H48HcaCcaT11B.1.214.20.0006
ORF1ab/nsp1048H48HcaCcaT11B.1.2340.000132
ORF1ab/nsp1048H48HcaCcaT11B.1.2390.001221
ORF1ab/nsp1048H48HcaCcaT11B.1.2400.000216
ORF1ab/nsp1048H48HcaCcaT11B.1.2410.000812
ORF1ab/nsp1048H48YCacTac11B.1.258.110.000396
ORF1ab/nsp1048H48YCacTac11B.1.2650.001271
ORF1ab/nsp1048H48HcaCcaT11B.1.2840.013158
ORF1ab/nsp1048H48HcaCcaT11B.1.3010.005917
ORF1ab/nsp1048H48YCacTac11B.1.3510.00003
ORF1ab/nsp1048H48HcaCcaT11B.1.351.30.000876
ORF1ab/nsp1048H48HcaCcaT11B.1.36.160.001425
ORF1ab/nsp1048H48RcAccGc11B.1.3890.001002
ORF1ab/nsp1048H48YCacTac11B.1.438.10.000107
ORF1ab/nsp1048H48HcaCcaT11B.1.4560.003268
ORF1ab/nsp1048H48YCacTac11B.1.5250.000113
ORF1ab/nsp1048H48RcAccGc11B.1.5260.000024
ORF1ab/nsp1048H48HcaCcaT11B.1.5760.000907
ORF1ab/nsp1048H48YCacTac11B.1.5950.000261
ORF1ab/nsp1048H48HcaCcaT11B.1.6120.002653
ORF1ab/nsp1048H48RcAccGc11B.1.617.20.000004
ORF1ab/nsp1048H48YCacTac11B.1.6210.000089
ORF1ab/nsp1048H48HcaCcaT11B.1.6210.000089
ORF1ab/nsp1048H48HcaCcaT11B.290.003509
ORF1ab/nsp1048H48HcaCcaT11B.3.10.001658
ORF1ab/nsp1048H48YCacTac11B.400.000364
ORF1ab/nsp1048H48HcaCcaT11C.180.002591
ORF1ab/nsp1048H48HcaCcaT11N.50.001767
ORF1ab/nsp1048H48delCAC---11P.10.000016
ORF1ab/nsp1048H48HcaCcaT11P.1.10.000318
ORF1ab/nsp1048H48HcaCcaT11P.1.20.001156
ORF1ab/nsp1048H48HcaCcaT11P.1.70.000319
ORF1ab/nsp1048H48YCacTac11P.20.000187
ORF1ab/nsp1048H48YCacTac11Q.30.000145
ORF1ab/nsp1048H48HcaCcaT11Q.80.000165