CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp10 : CodonNum = 136 & Codon = Tcc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp10136P136SP4389SnonsynCccTcc949949113430-13432

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp10136P136SCccTcc949949All0.000182
ORF1ab/nsp10136P136SCccTcc196196B.1.1770.002581
ORF1ab/nsp10136P136SCccTcc7878B.1.10.001415
ORF1ab/nsp10136P136SCccTcc7777AY.40.00012
ORF1ab/nsp10136P136SCccTcc7171B.1.617.20.000267
ORF1ab/nsp10136P136SCccTcc4747B.1.1.70.000042
ORF1ab/nsp10136P136SCccTcc4545B.1.1600.001403
ORF1ab/nsp10136P136SCccTcc3131AY.430.000137
ORF1ab/nsp10136P136SCccTcc2929AY.1030.00018
ORF1ab/nsp10136P136SCccTcc2727AY.440.000164
ORF1ab/nsp10136P136SCccTcc2424AY.250.000144
ORF1ab/nsp10136P136SCccTcc2222B.1.36.220.02657
ORF1ab/nsp10136P136SCccTcc2121B.10.000192
ORF1ab/nsp10136P136SCccTcc2020B.1.20.000176
ORF1ab/nsp10136P136SCccTcc1818B.1.177.190.025751
ORF1ab/nsp10136P136SCccTcc1515B.1.360.002189
ORF1ab/nsp10136P136SCccTcc1414B.1.4290.000329
ORF1ab/nsp10136P136SCccTcc1313P.10.000205
ORF1ab/nsp10136P136SCccTcc1111B0.001406
ORF1ab/nsp10136P136SCccTcc99AY.1000.000414
ORF1ab/nsp10136P136SCccTcc77AY.710.003325
ORF1ab/nsp10136P136SCccTcc77B.1.1.2140.000388
ORF1ab/nsp10136P136SCccTcc77B.1.5750.002124
ORF1ab/nsp10136P136SCccTcc66AY.10.002374
ORF1ab/nsp10136P136SCccTcc66AY.1190.000212
ORF1ab/nsp10136P136SCccTcc66AY.890.029412
ORF1ab/nsp10136P136SCccTcc55AY.390.000124
ORF1ab/nsp10136P136SCccTcc55AY.470.000156
ORF1ab/nsp10136P136SCccTcc55B.1.3910.005637
ORF1ab/nsp10136P136SCccTcc55B.1.4270.000252
ORF1ab/nsp10136P136SCccTcc44AY.1020.000106
ORF1ab/nsp10136P136SCccTcc44AY.1070.001864
ORF1ab/nsp10136P136SCccTcc44AY.1170.000338
ORF1ab/nsp10136P136SCccTcc44AY.320.00213
ORF1ab/nsp10136P136SCccTcc44AY.540.000381
ORF1ab/nsp10136P136SCccTcc44AY.610.000419
ORF1ab/nsp10136P136SCccTcc44B.1.6210.000354
ORF1ab/nsp10136P136SCccTcc33AY.140.000264
ORF1ab/nsp10136P136SCccTcc33AY.30.00003
ORF1ab/nsp10136P136SCccTcc33AY.50.000062
ORF1ab/nsp10136P136SCccTcc33B.1.1.3110.001074
ORF1ab/nsp10136P136SCccTcc33B.1.1.700.001023
ORF1ab/nsp10136P136SCccTcc33B.1.177.430.004431
ORF1ab/nsp10136P136SCccTcc33B.1.177.90.003995
ORF1ab/nsp10136P136SCccTcc33C.160.003181
ORF1ab/nsp10136P136SCccTcc22AY.260.000057
ORF1ab/nsp10136P136SCccTcc22AY.380.000999
ORF1ab/nsp10136P136SCccTcc22B.1.1.330.000842
ORF1ab/nsp10136P136SCccTcc22B.1.177.100.001756
ORF1ab/nsp10136P136SCccTcc22B.1.177.690.002967
ORF1ab/nsp10136P136SCccTcc22B.1.2340.000264
ORF1ab/nsp10136P136SCccTcc22B.1.36.180.00084
ORF1ab/nsp10136P136SCccTcc22B.1.617.10.000258
ORF1ab/nsp10136P136SCccTcc22C.36.3.10.005435
ORF1ab/nsp10136P136SCccTcc22P.1.70.000639
ORF1ab/nsp10136P136SCccTcc22P.30.00319
ORF1ab/nsp10136P136SCccTcc11A.10.000282
ORF1ab/nsp10136P136SCccTcc11AD.20.000219
ORF1ab/nsp10136P136SCccTcc11AY.1080.001103
ORF1ab/nsp10136P136SCccTcc11AY.1160.000287
ORF1ab/nsp10136P136SCccTcc11AY.120.000316
ORF1ab/nsp10136P136SCccTcc11AY.160.00038
ORF1ab/nsp10136P136SCccTcc11AY.230.00007
ORF1ab/nsp10136P136SCccTcc11AY.240.000431
ORF1ab/nsp10136P136SCccTcc11AY.330.000067
ORF1ab/nsp10136P136SCccTcc11AY.340.000097
ORF1ab/nsp10136P136SCccTcc11AY.360.000148
ORF1ab/nsp10136P136SCccTcc11AY.370.000316
ORF1ab/nsp10136P136SCccTcc11AY.4.20.000022
ORF1ab/nsp10136P136SCccTcc11AY.4.40.000409
ORF1ab/nsp10136P136SCccTcc11AY.4.50.000107
ORF1ab/nsp10136P136SCccTcc11AY.46.50.000198
ORF1ab/nsp10136P136SCccTcc11AY.560.001605
ORF1ab/nsp10136P136SCccTcc11AY.60.000041
ORF1ab/nsp10136P136SCccTcc11AY.690.000187
ORF1ab/nsp10136P136SCccTcc11AY.730.000665
ORF1ab/nsp10136P136SCccTcc11AY.740.000116
ORF1ab/nsp10136P136SCccTcc11AY.790.001211
ORF1ab/nsp10136P136SCccTcc11AY.9.10.000084
ORF1ab/nsp10136P136SCccTcc11AY.940.000443
ORF1ab/nsp10136P136SCccTcc11AY.980.000079
ORF1ab/nsp10136P136SCccTcc11AY.98.10.000048
ORF1ab/nsp10136P136SCccTcc11B.1.1.1230.017857
ORF1ab/nsp10136P136SCccTcc11B.1.1.280.000311
ORF1ab/nsp10136P136SCccTcc11B.1.1.3060.000438
ORF1ab/nsp10136P136SCccTcc11B.1.1.3180.000302
ORF1ab/nsp10136P136SCccTcc11B.1.1.3760.005952
ORF1ab/nsp10136P136SCccTcc11B.1.1.450.014085
ORF1ab/nsp10136P136SCccTcc11B.1.177.170.000821
ORF1ab/nsp10136P136SCccTcc11B.1.177.210.000076
ORF1ab/nsp10136P136SCccTcc11B.1.177.50.001242
ORF1ab/nsp10136P136SCccTcc11B.1.2580.000067
ORF1ab/nsp10136P136SCccTcc11B.1.3510.00003
ORF1ab/nsp10136P136SCccTcc11B.1.36.160.001425
ORF1ab/nsp10136P136SCccTcc11B.1.3770.004566
ORF1ab/nsp10136P136SCccTcc11B.1.4000.000429
ORF1ab/nsp10136P136SCccTcc11B.1.4580.111111
ORF1ab/nsp10136P136SCccTcc11B.1.5240.001406
ORF1ab/nsp10136P136SCccTcc11B.1.5260.000024
ORF1ab/nsp10136P136SCccTcc11B.1.5820.000491
ORF1ab/nsp10136P136SCccTcc11B.1.6280.000352
ORF1ab/nsp10136P136SCccTcc11P.1.140.000048
ORF1ab/nsp10136P136SCccTcc11P.1.170.000162
ORF1ab/nsp10136P136SCccTcc11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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