CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp10 | 134 | R134H | R4387H | nonsyn | cGc | cAc | 861 | 859 | 0.997677 | 13424-13426 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 859 | 861 | All | 0.000164 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 146 | 147 | B.1.1.7 | 0.000131 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 111 | 111 | AY.4 | 0.000173 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 61 | 61 | AY.61 | 0.006391 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 51 | 51 | AY.44 | 0.00031 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 50 | 50 | AY.25 | 0.000301 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 32 | 32 | P.1.14 | 0.00153 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 29 | 29 | AY.103 | 0.00018 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 29 | 29 | P.1 | 0.000457 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 25 | 25 | AY.27 | 0.001618 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 24 | 24 | B.1.617.2 | 0.00009 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 21 | 21 | B.1.2 | 0.000185 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 20 | 20 | AY.3 | 0.000199 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 20 | 20 | B.1.427 | 0.00101 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 18 | 18 | B.1.429 | 0.000424 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 15 | 15 | AY.46.4 | 0.002468 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 13 | 13 | AY.43 | 0.000058 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 13 | 13 | B.1.258.17 | 0.001352 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 13 | 13 | B.1.351 | 0.000386 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 11 | 11 | B.1.575 | 0.003337 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 10 | 10 | B.1.311 | 0.002746 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 8 | 8 | AY.98.1 | 0.000387 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 5 | 5 | AY.46.6 | 0.000361 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 5 | 5 | AY.70 | 0.001043 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 5 | 5 | B.1.1.138 | 0.030303 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 3 | 3 | AY.105 | 0.001929 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 3 | 3 | B.1.1.369 | 0.001339 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 3 | 3 | B.1.1.487 | 0.01676 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 2 | 2 | A | 0.000774 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 2 | AY.13 | 0.000161 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 2 | 2 | B.1.565 | 0.001621 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 2 | 2 | P.1.10.1 | 0.01626 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | B.1.1.524 | 0.020833 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | B.1.160.25 | 0.011111 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | B.1.280 | 0.007143 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp10 | 134 | R134H | cGc | cAc | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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