CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp10 : CodonNum = 134

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp10	134	R134C	R4387C	nonsyn	Cgc	Tgc	5646	5645	0.999823	13424-13426
ORF1ab/nsp10	134	R134C	R4387C	nonsyn	CgC	TgT	5646	1	0.000177117	13424-13426
ORF1ab/nsp10	134	R134R	R4387R	syn	cgC	cgT	4722	4609	0.976069	13424-13426
ORF1ab/nsp10	134	R134R	R4387R	syn	cgC	cgA	4722	105	0.0222363	13424-13426
ORF1ab/nsp10	134	R134R	R4387R	syn	cgC	cgG	4722	7	0.00148242	13424-13426
ORF1ab/nsp10	134	R134R	R4387R	syn	CgC	AgA	4722	1	0.000211775	13424-13426
ORF1ab/nsp10	134	R134S	R4387S	nonsyn	Cgc	Agc	1761	1760	0.999432	13424-13426
ORF1ab/nsp10	134	R134S	R4387S	nonsyn	CgC	AgT	1761	1	0.000567859	13424-13426
ORF1ab/nsp10	134	R134H	R4387H	nonsyn	cGc	cAc	861	859	0.997677	13424-13426
ORF1ab/nsp10	134	R134H	R4387H	nonsyn	cGC	cAT	861	2	0.00232288	13424-13426
ORF1ab/nsp10	134	R134N	R4387N	nonsyn	CGc	AAc	214	214	1	13424-13426
ORF1ab/nsp10	134	R134del	R4387del	del	CGC	---	71	71	1	13424-13426
ORF1ab/nsp10	134	R134L	R4387L	nonsyn	cGc	cTc	58	57	0.982759	13424-13426
ORF1ab/nsp10	134	R134L	R4387L	nonsyn	cGC	cTG	58	1	0.0172414	13424-13426
ORF1ab/nsp10	134	R134G	R4387G	nonsyn	Cgc	Ggc	14	14	1	13424-13426
ORF1ab/nsp10	134	R134del1	R4387del1	del	cgC	cg-	3	2	0.666667	13424-13426
ORF1ab/nsp10	134	R134del1	R4387del1	del	cGC	c-T	3	1	0.333333	13424-13426
ORF1ab/nsp10	134	R134P	R4387P	nonsyn	cGc	cCc	2	2	1	13424-13426
ORF1ab/nsp10	134	R134Q	R4387Q	nonsyn	cGC	cAG	1	1	1	13424-13426
ORF1ab/nsp10	134	R134T	R4387T	nonsyn	CGc	ACc	1	1	1	13424-13426
ORF1ab/nsp10	134	R134del2	R4387del2	del	CGc	--c	1	1	1	13424-13426
ORF1ab/nsp10	134	R134Y	R4387Y	nonsyn	CGc	TAc	1	1	1	13424-13426

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp10	134	R134C	Cgc	Tgc	5645	5646	All	0.00108
ORF1ab/nsp10	134	R134C	CgC	TgT	1	5646	All	0
ORF1ab/nsp10	134	R134R	cgC	cgT	4609	4722	All	0.000882
ORF1ab/nsp10	134	R134R	cgC	cgA	105	4722	All	0.00002
ORF1ab/nsp10	134	R134R	cgC	cgG	7	4722	All	0.000001
ORF1ab/nsp10	134	R134R	CgC	AgA	1	4722	All	0
ORF1ab/nsp10	134	R134C	Cgc	Tgc	2713	2713	AY.4	0.004223
ORF1ab/nsp10	134	R134S	Cgc	Agc	1760	1761	All	0.000337
ORF1ab/nsp10	134	R134S	CgC	AgT	1	1761	All	0
ORF1ab/nsp10	134	R134R	cgC	cgT	1617	1653	B.1.1.7	0.001448
ORF1ab/nsp10	134	R134R	cgC	cgA	36	1653	B.1.1.7	0.000032
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1539	1539	B.1.1.7	0.001378
ORF1ab/nsp10	134	R134H	cGc	cAc	859	861	All	0.000164
ORF1ab/nsp10	134	R134H	cGC	cAT	2	861	All	0
ORF1ab/nsp10	134	R134S	Cgc	Agc	639	639	B.1.1.7	0.000572
ORF1ab/nsp10	134	R134R	cgC	cgT	415	415	P.1.14	0.019837
ORF1ab/nsp10	134	R134R	cgC	cgT	394	401	AY.4	0.000613
ORF1ab/nsp10	134	R134R	cgC	cgA	7	401	AY.4	0.000011
ORF1ab/nsp10	134	R134R	cgC	cgT	285	285	B.1.36.22	0.344203
ORF1ab/nsp10	134	R134R	cgC	cgT	243	245	B.1.1	0.004408
ORF1ab/nsp10	134	R134R	cgC	cgA	1	245	B.1.1	0.000018
ORF1ab/nsp10	134	R134R	cgC	cgG	1	245	B.1.1	0.000018
ORF1ab/nsp10	134	R134N	CGc	AAc	214	214	All	0.000041
ORF1ab/nsp10	134	R134R	cgC	cgT	210	210	AY.118	0.013156
ORF1ab/nsp10	134	R134S	Cgc	Agc	178	178	AY.4	0.000277
ORF1ab/nsp10	134	R134C	Cgc	Tgc	150	150	B.1.617.2	0.000565
ORF1ab/nsp10	134	R134H	cGc	cAc	146	147	B.1.1.7	0.000131
ORF1ab/nsp10	134	R134H	cGC	cAT	1	147	B.1.1.7	0.000001
ORF1ab/nsp10	134	R134C	Cgc	Tgc	128	128	AY.6	0.005264
ORF1ab/nsp10	134	R134R	cgC	cgT	113	113	B.1.2	0.000995
ORF1ab/nsp10	134	R134H	cGc	cAc	111	111	AY.4	0.000173
ORF1ab/nsp10	134	R134R	cgC	cgT	105	110	B.1.617.2	0.000395
ORF1ab/nsp10	134	R134R	cgC	cgG	3	110	B.1.617.2	0.000011
ORF1ab/nsp10	134	R134R	cgC	cgA	2	110	B.1.617.2	0.000008
ORF1ab/nsp10	134	R134C	Cgc	Tgc	109	109	AY.43	0.000483
ORF1ab/nsp10	134	R134S	Cgc	Agc	104	104	AY.3	0.001034
ORF1ab/nsp10	134	R134C	Cgc	Tgc	101	101	AY.29	0.001593
ORF1ab/nsp10	134	R134R	cgC	cgT	101	101	B.1.1.251	0.801587
ORF1ab/nsp10	134	R134S	Cgc	Agc	77	77	AY.103	0.000478
ORF1ab/nsp10	134	R134del	CGC	---	71	71	All	0.000014
ORF1ab/nsp10	134	R134C	Cgc	Tgc	70	70	P.1	0.001103
ORF1ab/nsp10	134	R134H	cGc	cAc	61	61	AY.61	0.006391
ORF1ab/nsp10	134	R134R	cgC	cgT	57	60	B.1.427	0.002878
ORF1ab/nsp10	134	R134R	cgC	cgA	3	60	B.1.427	0.000151
ORF1ab/nsp10	134	R134L	cGc	cTc	57	58	All	0.000011
ORF1ab/nsp10	134	R134L	cGC	cTG	1	58	All	0
ORF1ab/nsp10	134	R134C	Cgc	Tgc	54	54	P.3	0.086124
ORF1ab/nsp10	134	R134R	cgC	cgT	52	53	AY.3	0.000517
ORF1ab/nsp10	134	R134R	cgC	cgA	1	53	AY.3	0.00001
ORF1ab/nsp10	134	R134N	CGc	AAc	53	53	B.1.1.7	0.000047
ORF1ab/nsp10	134	R134C	Cgc	Tgc	52	52	AY.103	0.000323
ORF1ab/nsp10	134	R134S	Cgc	Agc	52	52	AY.25	0.000313
ORF1ab/nsp10	134	R134R	cgC	cgT	52	52	AY.25	0.000313
ORF1ab/nsp10	134	R134S	Cgc	Agc	52	52	B.1.617.2	0.000196
ORF1ab/nsp10	134	R134H	cGc	cAc	51	51	AY.44	0.00031
ORF1ab/nsp10	134	R134C	Cgc	Tgc	51	51	B.1.466.2	0.019953
ORF1ab/nsp10	134	R134H	cGc	cAc	50	50	AY.25	0.000301
ORF1ab/nsp10	134	R134C	Cgc	Tgc	48	48	AY.44	0.000292
ORF1ab/nsp10	134	R134R	cgC	cgT	44	47	P.1	0.000693
ORF1ab/nsp10	134	R134R	cgC	cgA	3	47	P.1	0.000047
ORF1ab/nsp10	134	R134R	cgC	cgT	44	46	B.1	0.000403
ORF1ab/nsp10	134	R134R	cgC	cgA	2	46	B.1	0.000018
ORF1ab/nsp10	134	R134R	cgC	cgT	43	44	AY.103	0.000267
ORF1ab/nsp10	134	R134R	cgC	cgA	1	44	AY.103	0.000006
ORF1ab/nsp10	134	R134N	CGc	AAc	44	44	AY.4	0.000068
ORF1ab/nsp10	134	R134S	Cgc	Agc	43	43	B.1.526	0.001011
ORF1ab/nsp10	134	R134S	Cgc	Agc	41	41	AY.44	0.00025
ORF1ab/nsp10	134	R134C	Cgc	Tgc	41	41	B.1.2	0.000361
ORF1ab/nsp10	134	R134R	cgC	cgT	40	41	B.1.221	0.002841
ORF1ab/nsp10	134	R134R	cgC	cgA	1	41	B.1.221	0.000071
ORF1ab/nsp10	134	R134R	cgC	cgT	32	37	AY.44	0.000195
ORF1ab/nsp10	134	R134R	cgC	cgG	3	37	AY.44	0.000018
ORF1ab/nsp10	134	R134R	cgC	cgA	2	37	AY.44	0.000012
ORF1ab/nsp10	134	R134R	cgC	cgT	36	36	AY.47	0.00112
ORF1ab/nsp10	134	R134R	cgC	cgT	35	35	AY.105	0.022508
ORF1ab/nsp10	134	R134C	Cgc	Tgc	35	35	AY.5	0.000723
ORF1ab/nsp10	134	R134S	Cgc	Agc	34	34	AY.117	0.002874
ORF1ab/nsp10	134	R134R	cgC	cgA	32	33	R.1	0.00288
ORF1ab/nsp10	134	R134R	cgC	cgT	1	33	R.1	0.00009
ORF1ab/nsp10	134	R134R	cgC	cgT	32	32	AY.34	0.003103
ORF1ab/nsp10	134	R134S	Cgc	Agc	32	32	AY.39	0.000791
ORF1ab/nsp10	134	R134C	Cgc	Tgc	32	32	B.1.526	0.000752
ORF1ab/nsp10	134	R134H	cGc	cAc	32	32	P.1.14	0.00153
ORF1ab/nsp10	134	R134R	cgC	cgT	32	32	Q.8	0.005277
ORF1ab/nsp10	134	R134C	Cgc	Tgc	30	30	AY.3	0.000298
ORF1ab/nsp10	134	R134S	Cgc	Agc	30	30	B.1.517	0.01281
ORF1ab/nsp10	134	R134H	cGc	cAc	29	29	AY.103	0.00018
ORF1ab/nsp10	134	R134H	cGc	cAc	29	29	P.1	0.000457
ORF1ab/nsp10	134	R134C	Cgc	Tgc	28	28	B.1.1.519	0.001112
ORF1ab/nsp10	134	R134R	cgC	cgT	27	28	B.1.160	0.000842
ORF1ab/nsp10	134	R134R	cgC	cgA	1	28	B.1.160	0.000031
ORF1ab/nsp10	134	R134R	cgC	cgT	26	27	AY.20	0.00101
ORF1ab/nsp10	134	R134R	cgC	cgA	1	27	AY.20	0.000039
ORF1ab/nsp10	134	R134S	Cgc	Agc	27	27	AY.42	0.001086
ORF1ab/nsp10	134	R134S	Cgc	Agc	27	27	AY.43	0.00012
ORF1ab/nsp10	134	R134S	Cgc	Agc	26	26	P.1	0.00041
ORF1ab/nsp10	134	R134H	cGc	cAc	25	25	AY.27	0.001618
ORF1ab/nsp10	134	R134del	CGC	---	25	25	B.1.1.7	0.000022
ORF1ab/nsp10	134	R134H	cGc	cAc	24	24	B.1.617.2	0.00009
ORF1ab/nsp10	134	R134C	Cgc	Tgc	23	23	AY.25	0.000138
ORF1ab/nsp10	134	R134R	cgC	cgT	21	22	AY.102	0.000557
ORF1ab/nsp10	134	R134R	CgC	AgA	1	22	AY.102	0.000027
ORF1ab/nsp10	134	R134R	cgC	cgT	22	22	AY.43	0.000097
ORF1ab/nsp10	134	R134C	Cgc	Tgc	22	22	B.1.429	0.000518
ORF1ab/nsp10	134	R134H	cGc	cAc	21	21	B.1.2	0.000185
ORF1ab/nsp10	134	R134H	cGc	cAc	20	20	AY.3	0.000199
ORF1ab/nsp10	134	R134S	Cgc	Agc	20	20	AY.74	0.002313
ORF1ab/nsp10	134	R134S	Cgc	Agc	20	20	AY.98.1	0.000969
ORF1ab/nsp10	134	R134R	cgC	cgT	20	20	B.1.1.519	0.000794
ORF1ab/nsp10	134	R134H	cGc	cAc	20	20	B.1.427	0.00101
ORF1ab/nsp10	134	R134S	Cgc	Agc	19	19	AY.20	0.000738
ORF1ab/nsp10	134	R134L	cGc	cTc	19	19	B.1.1.7	0.000017
ORF1ab/nsp10	134	R134S	Cgc	Agc	18	18	AY.46.4	0.002961
ORF1ab/nsp10	134	R134H	cGc	cAc	18	18	B.1.429	0.000424
ORF1ab/nsp10	134	R134R	cgC	cgT	18	18	B.1.596	0.001568
ORF1ab/nsp10	134	R134R	cgC	cgT	17	17	AY.26	0.000481
ORF1ab/nsp10	134	R134C	Cgc	Tgc	17	17	B.1	0.000156
ORF1ab/nsp10	134	R134R	cgC	cgT	17	17	B.1.1.369	0.007586
ORF1ab/nsp10	134	R134C	Cgc	Tgc	17	17	B.1.177	0.000224
ORF1ab/nsp10	134	R134R	cgC	cgT	17	17	B.1.177	0.000224
ORF1ab/nsp10	134	R134C	Cgc	Tgc	17	17	B.1.351	0.000505
ORF1ab/nsp10	134	R134R	cgC	cgT	16	16	AY.39	0.000395
ORF1ab/nsp10	134	R134R	cgC	cgT	16	16	AY.64	0.009524
ORF1ab/nsp10	134	R134C	Cgc	Tgc	16	16	B.1.243	0.001113
ORF1ab/nsp10	134	R134N	CGc	AAc	15	15	AY.107	0.00699
ORF1ab/nsp10	134	R134H	cGc	cAc	15	15	AY.46.4	0.002468
ORF1ab/nsp10	134	R134R	cgC	cgT	15	15	AY.9	0.001014
ORF1ab/nsp10	134	R134S	Cgc	Agc	15	15	B.1.1.519	0.000596
ORF1ab/nsp10	134	R134R	cgC	cgT	15	15	B.1.621	0.001328
ORF1ab/nsp10	134	R134G	Cgc	Ggc	14	14	All	0.000003
ORF1ab/nsp10	134	R134R	cgC	cgT	13	14	AY.23	0.000907
ORF1ab/nsp10	134	R134R	cgC	cgA	1	14	AY.23	0.00007
ORF1ab/nsp10	134	R134C	Cgc	Tgc	14	14	B.1.1	0.000254
ORF1ab/nsp10	134	R134C	Cgc	Tgc	13	14	P.1.14	0.000621
ORF1ab/nsp10	134	R134C	CgC	TgT	1	14	P.1.14	0.000048
ORF1ab/nsp10	134	R134C	Cgc	Tgc	13	13	AY.39	0.000321
ORF1ab/nsp10	134	R134G	Cgc	Ggc	13	13	AY.4	0.00002
ORF1ab/nsp10	134	R134C	Cgc	Tgc	13	13	AY.4.2	0.000282
ORF1ab/nsp10	134	R134H	cGc	cAc	13	13	AY.43	0.000058
ORF1ab/nsp10	134	R134H	cGc	cAc	13	13	B.1.258.17	0.001352
ORF1ab/nsp10	134	R134R	cgC	cgT	13	13	B.1.258.17	0.001352
ORF1ab/nsp10	134	R134H	cGc	cAc	13	13	B.1.351	0.000386
ORF1ab/nsp10	134	R134C	Cgc	Tgc	12	12	B.1.160	0.000374
ORF1ab/nsp10	134	R134C	Cgc	Tgc	12	12	B.1.177.21	0.000918
ORF1ab/nsp10	134	R134S	Cgc	Agc	11	11	AY.119	0.000388
ORF1ab/nsp10	134	R134S	Cgc	Agc	11	11	AY.29.1	0.002426
ORF1ab/nsp10	134	R134N	CGc	AAc	11	11	AY.46.6	0.000794
ORF1ab/nsp10	134	R134H	cGc	cAc	11	11	B.1.575	0.003337
ORF1ab/nsp10	134	R134N	CGc	AAc	11	11	B.1.617.2	0.000041
ORF1ab/nsp10	134	R134R	cgC	cgT	10	10	AY.116	0.002868
ORF1ab/nsp10	134	R134R	cgC	cgT	10	10	AY.36	0.001482
ORF1ab/nsp10	134	R134S	Cgc	Agc	10	10	AY.4.2	0.000217
ORF1ab/nsp10	134	R134C	Cgc	Tgc	10	10	AY.47	0.000311
ORF1ab/nsp10	134	R134C	Cgc	Tgc	10	10	AY.52	0.008143
ORF1ab/nsp10	134	R134R	cgC	cgT	10	10	B.1.177.12	0.001517
ORF1ab/nsp10	134	R134H	cGc	cAc	10	10	B.1.311	0.002746
ORF1ab/nsp10	134	R134S	Cgc	Agc	10	10	B.1.628	0.003524
ORF1ab/nsp10	134	R134S	Cgc	Agc	9	9	AY.102	0.000239
ORF1ab/nsp10	134	R134C	Cgc	Tgc	9	9	AY.20	0.00035
ORF1ab/nsp10	134	R134L	cGc	cTc	9	9	AY.4	0.000014
ORF1ab/nsp10	134	R134S	Cgc	Agc	9	9	B.1.177.21	0.000688
ORF1ab/nsp10	134	R134S	Cgc	Agc	9	9	B.1.429	0.000212
ORF1ab/nsp10	134	R134C	Cgc	Tgc	9	9	B.1.438.1	0.000965
ORF1ab/nsp10	134	R134C	Cgc	Tgc	8	8	AY.120	0.000297
ORF1ab/nsp10	134	R134H	cGc	cAc	8	8	AY.98.1	0.000387
ORF1ab/nsp10	134	R134R	cgC	cgT	8	8	C.37	0.000929
ORF1ab/nsp10	134	R134S	Cgc	Agc	7	7	AY.100	0.000322
ORF1ab/nsp10	134	R134R	cgC	cgT	7	7	AY.100	0.000322
ORF1ab/nsp10	134	R134C	Cgc	Tgc	7	7	AY.100	0.000322
ORF1ab/nsp10	134	R134N	CGc	AAc	7	7	AY.25	0.000042
ORF1ab/nsp10	134	R134R	cgC	cgT	7	7	AY.29.1	0.001544
ORF1ab/nsp10	134	R134R	cgC	cgA	4	7	AY.4.2	0.000087
ORF1ab/nsp10	134	R134R	cgC	cgT	3	7	AY.4.2	0.000065
ORF1ab/nsp10	134	R134R	cgC	cgT	7	7	AY.42	0.000282
ORF1ab/nsp10	134	R134C	Cgc	Tgc	7	7	AY.42	0.000282
ORF1ab/nsp10	134	R134S	Cgc	Agc	7	7	B.1	0.000064
ORF1ab/nsp10	134	R134S	Cgc	Agc	7	7	B.1.177	0.000092
ORF1ab/nsp10	134	R134S	Cgc	Agc	7	7	B.1.351	0.000208
ORF1ab/nsp10	134	R134R	cgC	cgT	7	7	B.1.36	0.001021
ORF1ab/nsp10	134	R134C	Cgc	Tgc	7	7	B.1.427	0.000353
ORF1ab/nsp10	134	R134C	Cgc	Tgc	7	7	B.1.525	0.000792
ORF1ab/nsp10	134	R134R	cgC	cgT	7	7	D.2	0.000525
ORF1ab/nsp10	134	R134C	Cgc	Tgc	6	6	AY.111	0.001099
ORF1ab/nsp10	134	R134N	CGc	AAc	6	6	AY.116.1	0.001869
ORF1ab/nsp10	134	R134N	CGc	AAc	6	6	AY.29	0.000095
ORF1ab/nsp10	134	R134S	Cgc	Agc	6	6	AY.29	0.000095
ORF1ab/nsp10	134	R134R	cgC	cgT	6	6	AY.29	0.000095
ORF1ab/nsp10	134	R134R	cgC	cgT	6	6	AY.45	0.00073
ORF1ab/nsp10	134	R134S	Cgc	Agc	6	6	AY.6	0.000247
ORF1ab/nsp10	134	R134del	CGC	---	6	6	B.1	0.000055
ORF1ab/nsp10	134	R134S	Cgc	Agc	6	6	B.1.1	0.000109
ORF1ab/nsp10	134	R134R	cgC	cgT	6	6	B.1.1.239	0.193548
ORF1ab/nsp10	134	R134S	Cgc	Agc	6	6	B.1.2	0.000053
ORF1ab/nsp10	134	R134N	CGc	AAc	6	6	B.1.2	0.000053
ORF1ab/nsp10	134	R134S	Cgc	Agc	6	6	B.1.258	0.000399
ORF1ab/nsp10	134	R134R	cgC	cgT	6	6	B.1.258	0.000399
ORF1ab/nsp10	134	R134C	Cgc	Tgc	6	6	B.1.258.17	0.000624
ORF1ab/nsp10	134	R134R	cgC	cgT	6	6	B.1.351	0.000178
ORF1ab/nsp10	134	R134R	cgC	cgT	6	6	B.1.429	0.000141
ORF1ab/nsp10	134	R134H	cGc	cAc	6	6	B.1.526	0.000141
ORF1ab/nsp10	134	R134S	Cgc	Agc	6	6	P.1.1	0.001906
ORF1ab/nsp10	134	R134N	CGc	AAc	5	5	AY.103	0.000031
ORF1ab/nsp10	134	R134C	Cgc	Tgc	5	5	AY.110	0.000563
ORF1ab/nsp10	134	R134R	cgC	cgT	5	5	AY.119	0.000177
ORF1ab/nsp10	134	R134R	cgC	cgT	5	5	AY.120	0.000186
ORF1ab/nsp10	134	R134C	Cgc	Tgc	5	5	AY.30	0.001979
ORF1ab/nsp10	134	R134S	Cgc	Agc	5	5	AY.33	0.000334
ORF1ab/nsp10	134	R134H	cGc	cAc	5	5	AY.46.6	0.000361
ORF1ab/nsp10	134	R134S	Cgc	Agc	5	5	AY.61	0.000524
ORF1ab/nsp10	134	R134H	cGc	cAc	5	5	AY.70	0.001043
ORF1ab/nsp10	134	R134R	cgC	cgT	5	5	AY.75	0.00028
ORF1ab/nsp10	134	R134H	cGc	cAc	5	5	B.1	0.000046
ORF1ab/nsp10	134	R134H	cGc	cAc	5	5	B.1.1.138	0.030303
ORF1ab/nsp10	134	R134H	cGc	cAc	5	5	B.1.160	0.000156
ORF1ab/nsp10	134	R134R	cgC	cgT	5	5	B.1.240	0.001078
ORF1ab/nsp10	134	R134S	Cgc	Agc	5	5	B.1.427	0.000252
ORF1ab/nsp10	134	R134R	cgC	cgT	5	5	B.1.526	0.000118
ORF1ab/nsp10	134	R134S	Cgc	Agc	5	5	B.1.637	0.000365
ORF1ab/nsp10	134	R134R	cgC	cgT	5	5	B.1.637	0.000365
ORF1ab/nsp10	134	R134C	Cgc	Tgc	5	5	C.37	0.00058
ORF1ab/nsp10	134	R134R	cgC	cgT	5	5	P.1.17	0.000809
ORF1ab/nsp10	134	R134R	cgC	cgT	4	4	AY.106	0.00134
ORF1ab/nsp10	134	R134H	cGc	cAc	4	4	AY.118	0.000251
ORF1ab/nsp10	134	R134C	Cgc	Tgc	4	4	AY.19	0.004561
ORF1ab/nsp10	134	R134C	Cgc	Tgc	4	4	AY.23	0.000279
ORF1ab/nsp10	134	R134H	cGc	cAc	4	4	AY.39	0.000099
ORF1ab/nsp10	134	R134del	CGC	---	4	4	AY.4	0.000006
ORF1ab/nsp10	134	R134H	cGc	cAc	4	4	AY.4.5	0.00043
ORF1ab/nsp10	134	R134del	CGC	---	4	4	AY.43	0.000018
ORF1ab/nsp10	134	R134N	CGc	AAc	4	4	AY.43	0.000018
ORF1ab/nsp10	134	R134L	cGc	cTc	4	4	AY.44	0.000024
ORF1ab/nsp10	134	R134S	Cgc	Agc	4	4	AY.5	0.000083
ORF1ab/nsp10	134	R134R	cgC	cgT	4	4	AY.5	0.000083
ORF1ab/nsp10	134	R134N	CGc	AAc	4	4	AY.5.4	0.001107
ORF1ab/nsp10	134	R134R	cgC	cgT	4	4	AY.5.4	0.001107
ORF1ab/nsp10	134	R134C	Cgc	Tgc	4	4	AY.54	0.000381
ORF1ab/nsp10	134	R134R	cgC	cgT	4	4	AY.6	0.000165
ORF1ab/nsp10	134	R134S	Cgc	Agc	4	4	AY.88	0.003537
ORF1ab/nsp10	134	R134S	Cgc	Agc	4	4	AY.9	0.00027
ORF1ab/nsp10	134	R134N	CGc	AAc	4	4	AY.9	0.00027
ORF1ab/nsp10	134	R134S	Cgc	Agc	4	4	AY.9.2	0.000147
ORF1ab/nsp10	134	R134S	Cgc	Agc	4	4	AY.98	0.000316
ORF1ab/nsp10	134	R134R	cgC	cgT	4	4	AY.98.1	0.000194
ORF1ab/nsp10	134	R134S	Cgc	Agc	4	4	AY.99.2	0.000369
ORF1ab/nsp10	134	R134R	cgC	cgT	4	4	B.1.1.133	0.033898
ORF1ab/nsp10	134	R134R	cgC	cgT	4	4	B.1.1.153	0.004381
ORF1ab/nsp10	134	R134R	cgC	cgT	4	4	B.1.126	0.005102
ORF1ab/nsp10	134	R134S	Cgc	Agc	4	4	B.1.177.65	0.002661
ORF1ab/nsp10	134	R134S	Cgc	Agc	4	4	B.1.258.17	0.000416
ORF1ab/nsp10	134	R134S	Cgc	Agc	4	4	B.1.596	0.000349
ORF1ab/nsp10	134	R134R	cgC	cgT	4	4	B.1.617.1	0.000516
ORF1ab/nsp10	134	R134C	Cgc	Tgc	4	4	P.1.15	0.000929
ORF1ab/nsp10	134	R134S	Cgc	Agc	4	4	P.1.17	0.000647
ORF1ab/nsp10	134	R134C	Cgc	Tgc	4	4	Q.1	0.000505
ORF1ab/nsp10	134	R134R	cgC	cgT	3	3	A.2.5	0.001497
ORF1ab/nsp10	134	R134del1	cgC	cg-	2	3	All	0
ORF1ab/nsp10	134	R134del1	cGC	c-T	1	3	All	0
ORF1ab/nsp10	134	R134L	cGc	cTc	3	3	AY.100	0.000138
ORF1ab/nsp10	134	R134C	Cgc	Tgc	3	3	AY.102	0.00008
ORF1ab/nsp10	134	R134H	cGc	cAc	3	3	AY.105	0.001929
ORF1ab/nsp10	134	R134S	Cgc	Agc	3	3	AY.106	0.001005
ORF1ab/nsp10	134	R134S	Cgc	Agc	3	3	AY.13	0.000483
ORF1ab/nsp10	134	R134R	cgC	cgT	3	3	AY.14	0.000264
ORF1ab/nsp10	134	R134C	Cgc	Tgc	3	3	AY.16	0.001139
ORF1ab/nsp10	134	R134S	Cgc	Agc	3	3	AY.23	0.000209
ORF1ab/nsp10	134	R134C	Cgc	Tgc	3	3	AY.23.1	0.001252
ORF1ab/nsp10	134	R134S	Cgc	Agc	3	3	AY.23.1	0.001252
ORF1ab/nsp10	134	R134S	Cgc	Agc	3	3	AY.26	0.000085
ORF1ab/nsp10	134	R134C	Cgc	Tgc	3	3	AY.26	0.000085
ORF1ab/nsp10	134	R134R	cgC	cgT	3	3	AY.27	0.000194
ORF1ab/nsp10	134	R134R	cgC	cgA	2	3	AY.3.1	0.000171
ORF1ab/nsp10	134	R134R	cgC	cgT	1	3	AY.3.1	0.000085
ORF1ab/nsp10	134	R134N	CGc	AAc	3	3	AY.34	0.000291
ORF1ab/nsp10	134	R134S	Cgc	Agc	3	3	AY.4.5	0.000322
ORF1ab/nsp10	134	R134R	cgC	cgT	3	3	AY.46.4	0.000494
ORF1ab/nsp10	134	R134S	Cgc	Agc	3	3	AY.46.6	0.000217
ORF1ab/nsp10	134	R134S	Cgc	Agc	3	3	AY.54	0.000286
ORF1ab/nsp10	134	R134R	cgC	cgT	3	3	AY.74	0.000347
ORF1ab/nsp10	134	R134C	Cgc	Tgc	3	3	AY.98.1	0.000145
ORF1ab/nsp10	134	R134R	cgC	cgT	3	3	AZ.2	0.002463
ORF1ab/nsp10	134	R134del	CGC	---	3	3	B.1.1	0.000054
ORF1ab/nsp10	134	R134N	CGc	AAc	3	3	B.1.1	0.000054
ORF1ab/nsp10	134	R134C	Cgc	Tgc	3	3	B.1.1.357	0.375
ORF1ab/nsp10	134	R134H	cGc	cAc	3	3	B.1.1.369	0.001339
ORF1ab/nsp10	134	R134H	cGc	cAc	3	3	B.1.1.487	0.01676
ORF1ab/nsp10	134	R134del	CGC	---	3	3	B.1.177	0.00004
ORF1ab/nsp10	134	R134H	cGc	cAc	3	3	B.1.177	0.00004
ORF1ab/nsp10	134	R134R	cgC	cgT	3	3	B.1.177.15	0.001893
ORF1ab/nsp10	134	R134del	CGC	---	3	3	B.1.2	0.000026
ORF1ab/nsp10	134	R134S	Cgc	Agc	3	3	B.1.240	0.000647
ORF1ab/nsp10	134	R134R	cgC	cgT	3	3	B.1.240.1	0.075
ORF1ab/nsp10	134	R134H	cGc	cAc	3	3	B.1.258	0.0002
ORF1ab/nsp10	134	R134R	cgC	cgT	3	3	B.1.265	0.003812
ORF1ab/nsp10	134	R134C	Cgc	Tgc	3	3	B.1.36	0.000438
ORF1ab/nsp10	134	R134N	CGc	AAc	3	3	B.1.429	0.000071
ORF1ab/nsp10	134	R134C	Cgc	Tgc	3	3	B.1.517	0.001281
ORF1ab/nsp10	134	R134R	cgC	cgT	3	3	B.1.525	0.000339
ORF1ab/nsp10	134	R134N	CGc	AAc	3	3	B.1.526	0.000071
ORF1ab/nsp10	134	R134R	cgC	cgT	3	3	B.1.588	0.00273
ORF1ab/nsp10	134	R134H	cGc	cAc	3	3	B.1.596	0.000261
ORF1ab/nsp10	134	R134H	cGc	cAc	3	3	B.1.621	0.000266
ORF1ab/nsp10	134	R134R	cgC	cgT	3	3	P.1.12	0.001452
ORF1ab/nsp10	134	R134S	Cgc	Agc	3	3	P.1.12	0.001452
ORF1ab/nsp10	134	R134S	Cgc	Agc	3	3	P.1.14	0.000143
ORF1ab/nsp10	134	R134C	Cgc	Tgc	3	3	P.1.17.1	0.002625
ORF1ab/nsp10	134	R134C	Cgc	Tgc	3	3	Z.1	0.008671
ORF1ab/nsp10	134	R134H	cGc	cAc	2	2	A	0.000774
ORF1ab/nsp10	134	R134P	cGc	cCc	2	2	All	0
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	AY.10	0.00106
ORF1ab/nsp10	134	R134H	cGc	cAc	2	2	AY.100	0.000092
ORF1ab/nsp10	134	R134L	cGc	cTc	2	2	AY.103	0.000012
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	AY.113	0.000285
ORF1ab/nsp10	134	R134C	Cgc	Tgc	2	2	AY.113	0.000285
ORF1ab/nsp10	134	R134C	Cgc	Tgc	2	2	AY.117	0.000169
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	AY.117	0.000169
ORF1ab/nsp10	134	R134H	cGc	cAc	2	2	AY.117	0.000169
ORF1ab/nsp10	134	R134H	cGc	cAc	2	2	AY.119	0.000071
ORF1ab/nsp10	134	R134H	cGc	cAc	2	2	AY.120	0.000074
ORF1ab/nsp10	134	R134S	Cgc	Agc	2	2	AY.120	0.000074
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	AY.121	0.000271
ORF1ab/nsp10	134	R134C	Cgc	Tgc	2	2	AY.13	0.000322
ORF1ab/nsp10	134	R134H	cGc	cAc	1	2	AY.13	0.000161
ORF1ab/nsp10	134	R134R	cgC	cgA	1	2	AY.13	0.000161
ORF1ab/nsp10	134	R134H	cGC	cAT	1	2	AY.13	0.000161
ORF1ab/nsp10	134	R134R	cgC	cgT	1	2	AY.13	0.000161
ORF1ab/nsp10	134	R134S	Cgc	Agc	2	2	AY.16	0.000759
ORF1ab/nsp10	134	R134L	cGc	cTc	2	2	AY.25	0.000012
ORF1ab/nsp10	134	R134C	Cgc	Tgc	2	2	AY.3.1	0.000171
ORF1ab/nsp10	134	R134S	Cgc	Agc	2	2	AY.34	0.000194
ORF1ab/nsp10	134	R134C	Cgc	Tgc	2	2	AY.34	0.000194
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	AY.34.1	0.00102
ORF1ab/nsp10	134	R134C	Cgc	Tgc	2	2	AY.39.1	0.000079
ORF1ab/nsp10	134	R134H	cGc	cAc	2	2	AY.39.1	0.000079
ORF1ab/nsp10	134	R134S	Cgc	Agc	2	2	AY.39.1	0.000079
ORF1ab/nsp10	134	R134H	cGc	cAc	2	2	AY.4.2	0.000043
ORF1ab/nsp10	134	R134H	cGc	cAc	2	2	AY.4.2.1	0.000298
ORF1ab/nsp10	134	R134H	cGc	cAc	2	2	AY.45	0.000243
ORF1ab/nsp10	134	R134C	Cgc	Tgc	2	2	AY.46	0.000208
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	AY.46.2	0.001271
ORF1ab/nsp10	134	R134C	Cgc	Tgc	2	2	AY.46.6	0.000144
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	AY.50	0.001599
ORF1ab/nsp10	134	R134C	Cgc	Tgc	2	2	AY.53	0.000575
ORF1ab/nsp10	134	R134H	cGc	cAc	2	2	AY.54	0.000191
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	AY.55	0.001835
ORF1ab/nsp10	134	R134C	Cgc	Tgc	2	2	AY.58	0.001815
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	AY.59	0.001059
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	AY.69	0.000373
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	AY.7	0.000392
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	AY.7.2	0.001119
ORF1ab/nsp10	134	R134H	cGc	cAc	2	2	AY.74	0.000231
ORF1ab/nsp10	134	R134C	Cgc	Tgc	2	2	AY.75	0.000112
ORF1ab/nsp10	134	R134S	Cgc	Agc	2	2	AY.75	0.000112
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	AY.82	0.002714
ORF1ab/nsp10	134	R134C	Cgc	Tgc	2	2	AY.9	0.000135
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	AY.9.1	0.000167
ORF1ab/nsp10	134	R134H	cGc	cAc	2	2	AY.9.2	0.000073
ORF1ab/nsp10	134	R134C	Cgc	Tgc	2	2	AY.98	0.000158
ORF1ab/nsp10	134	R134S	Cgc	Agc	2	2	AY.99.1	0.003106
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	AY.99.2	0.000184
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	AZ.3	0.00304
ORF1ab/nsp10	134	R134L	cGc	cTc	2	2	B.1	0.000018
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	B.1.1.1	0.000653
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	B.1.1.244	0.030769
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	B.1.1.306	0.000877
ORF1ab/nsp10	134	R134S	Cgc	Agc	2	2	B.1.1.318	0.000604
ORF1ab/nsp10	134	R134S	Cgc	Agc	2	2	B.1.1.347	0.036364
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	B.1.1.354	0.008772
ORF1ab/nsp10	134	R134C	Cgc	Tgc	2	2	B.1.1.370	0.025316
ORF1ab/nsp10	134	R134C	Cgc	Tgc	2	2	B.1.1.416	0.00181
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	B.1.1.70	0.000682
ORF1ab/nsp10	134	R134N	CGc	AAc	2	2	B.1.177	0.000026
ORF1ab/nsp10	134	R134C	Cgc	Tgc	2	2	B.1.177.4	0.000422
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	B.1.177.4	0.000422
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	B.1.177.43	0.002954
ORF1ab/nsp10	134	R134C	Cgc	Tgc	2	2	B.1.177.44	0.001038
ORF1ab/nsp10	134	R134C	Cgc	Tgc	2	2	B.1.177.52	0.003515
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	B.1.177.73	0.001133
ORF1ab/nsp10	134	R134C	Cgc	Tgc	2	2	B.1.177.73	0.001133
ORF1ab/nsp10	134	R134S	Cgc	Agc	2	2	B.1.177.81	0.000379
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	B.1.234	0.000264
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	B.1.243	0.000139
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	B.1.258.2	0.009009
ORF1ab/nsp10	134	R134S	Cgc	Agc	2	2	B.1.311	0.000549
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	B.1.311	0.000549
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	B.1.367	0.001585
ORF1ab/nsp10	134	R134C	Cgc	Tgc	2	2	B.1.378	0.013699
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	B.1.404	0.002604
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	B.1.499	0.002101
ORF1ab/nsp10	134	R134H	cGc	cAc	2	2	B.1.565	0.001621
ORF1ab/nsp10	134	R134S	Cgc	Agc	2	2	B.1.575	0.000607
ORF1ab/nsp10	134	R134C	Cgc	Tgc	2	2	B.1.596	0.000174
ORF1ab/nsp10	134	R134H	cGc	cAc	2	2	B.1.609	0.000959
ORF1ab/nsp10	134	R134del	CGC	---	2	2	B.1.617.2	0.000008
ORF1ab/nsp10	134	R134S	Cgc	Agc	2	2	B.1.619.1	0.001283
ORF1ab/nsp10	134	R134N	CGc	AAc	2	2	B.1.627	0.00404
ORF1ab/nsp10	134	R134S	Cgc	Agc	2	2	C.37	0.000232
ORF1ab/nsp10	134	R134L	cGc	cTc	2	2	D.2	0.00015
ORF1ab/nsp10	134	R134C	Cgc	Tgc	2	2	D.2	0.00015
ORF1ab/nsp10	134	R134del	CGC	---	2	2	P.1	0.000032
ORF1ab/nsp10	134	R134H	cGc	cAc	2	2	P.1.10.1	0.01626
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	P.1.15	0.000465
ORF1ab/nsp10	134	R134R	cgC	cgT	2	2	P.1.7	0.000639
ORF1ab/nsp10	134	R134S	Cgc	Agc	2	2	P.3	0.00319
ORF1ab/nsp10	134	R134C	Cgc	Tgc	2	2	Q.8	0.00033
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	A	0.000387
ORF1ab/nsp10	134	R134L	cGc	cTc	1	1	A	0.000387
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	A.2.5.2	0.001572
ORF1ab/nsp10	134	R134Q	cGC	cAG	1	1	All	0
ORF1ab/nsp10	134	R134Y	CGc	TAc	1	1	All	0
ORF1ab/nsp10	134	R134del2	CGc	--c	1	1	All	0
ORF1ab/nsp10	134	R134T	CGc	ACc	1	1	All	0
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.1	0.000396
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	AY.102	0.000027
ORF1ab/nsp10	134	R134del	CGC	---	1	1	AY.103	0.000006
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	AY.110	0.000113
ORF1ab/nsp10	134	R134R	cgC	cgA	1	1	AY.111	0.000183
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	AY.111	0.000183
ORF1ab/nsp10	134	R134del	CGC	---	1	1	AY.111	0.000183
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	AY.113	0.000142
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	AY.114	0.000231
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	AY.116	0.000287
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	AY.116.1	0.000311
ORF1ab/nsp10	134	R134del	CGC	---	1	1	AY.119	0.000035
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.119	0.000035
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	AY.12	0.000316
ORF1ab/nsp10	134	R134N	CGc	AAc	1	1	AY.12	0.000316
ORF1ab/nsp10	134	R134del	CGC	---	1	1	AY.120	0.000037
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	AY.121	0.000135
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.14	0.000088
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	AY.15	0.002222
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	AY.16	0.00038
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	AY.17	0.008197
ORF1ab/nsp10	134	R134N	CGc	AAc	1	1	AY.20	0.000039
ORF1ab/nsp10	134	R134L	cGc	cTc	1	1	AY.20	0.000039
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	AY.20	0.000039
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.21	0.001898
ORF1ab/nsp10	134	R134del	CGC	---	1	1	AY.23	0.00007
ORF1ab/nsp10	134	R134del	CGC	---	1	1	AY.25	0.000006
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.27	0.000065
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	AY.27	0.000065
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	AY.28	0.00189
ORF1ab/nsp10	134	R134L	cGc	cTc	1	1	AY.3	0.00001
ORF1ab/nsp10	134	R134N	CGc	AAc	1	1	AY.3	0.00001
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	AY.3.1	0.000085
ORF1ab/nsp10	134	R134N	CGc	AAc	1	1	AY.3.1	0.000085
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	AY.30	0.000396
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	AY.30	0.000396
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.33	0.000067
ORF1ab/nsp10	134	R134N	CGc	AAc	1	1	AY.33	0.000067
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	AY.34	0.000097
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.34.1	0.00051
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.35	0.000233
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.36	0.000148
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	AY.36	0.000148
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.37	0.000316
ORF1ab/nsp10	134	R134L	cGc	cTc	1	1	AY.39	0.000025
ORF1ab/nsp10	134	R134N	CGc	AAc	1	1	AY.39.1	0.00004
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.39.2	0.001541
ORF1ab/nsp10	134	R134P	cGc	cCc	1	1	AY.4	0.000002
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	AY.4.2.1	0.000149
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	AY.4.2.1	0.000149
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	AY.4.3	0.000842
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.4.4	0.000409
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	AY.4.4	0.000409
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.4.5	0.000107
ORF1ab/nsp10	134	R134del	CGC	---	1	1	AY.4.5	0.000107
ORF1ab/nsp10	134	R134R	cgC	cgA	1	1	AY.4.5	0.000107
ORF1ab/nsp10	134	R134N	CGc	AAc	1	1	AY.42	0.00004
ORF1ab/nsp10	134	R134L	cGc	cTc	1	1	AY.43	0.000004
ORF1ab/nsp10	134	R134N	CGc	AAc	1	1	AY.44	0.000006
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.45	0.000122
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	AY.46	0.000104
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	AY.46	0.000104
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	AY.46.5	0.000198
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	AY.47	0.000031
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	AY.47	0.000031
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	AY.49	0.003195
ORF1ab/nsp10	134	R134L	cGc	cTc	1	1	AY.5	0.000021
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	AY.5	0.000021
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	AY.5.3	0.000337
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.5.3	0.000337
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	AY.5.3	0.000337
ORF1ab/nsp10	134	R134L	cGc	cTc	1	1	AY.5.4	0.000277
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.5.4	0.000277
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	AY.51	0.000909
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	AY.51	0.000909
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	AY.54	0.000095
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.55	0.000917
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	AY.57	0.000656
ORF1ab/nsp10	134	R134N	CGc	AAc	1	1	AY.6	0.000041
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	AY.61	0.000105
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.61	0.000105
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	AY.63	0.000387
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.68	0.000274
ORF1ab/nsp10	134	R134L	cGc	cTc	1	1	AY.69	0.000187
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	AY.7.1	0.000113
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	AY.71	0.000475
ORF1ab/nsp10	134	R134R	cgC	cgA	1	1	AY.73	0.000665
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.74	0.000116
ORF1ab/nsp10	134	R134del1	cgC	cg-	1	1	AY.75	0.000056
ORF1ab/nsp10	134	R134del	CGC	---	1	1	AY.75.1	0.00018
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	AY.77	0.001127
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	AY.79	0.001211
ORF1ab/nsp10	134	R134L	cGc	cTc	1	1	AY.79	0.001211
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	AY.79	0.001211
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	AY.8	0.000606
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	AY.84	0.000437
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	AY.85	0.000427
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	AY.9	0.000068
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	AY.9.1	0.000084
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.9.1	0.000084
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	AY.9.2	0.000037
ORF1ab/nsp10	134	R134N	CGc	AAc	1	1	AY.9.2	0.000037
ORF1ab/nsp10	134	R134del	CGC	---	1	1	AY.9.2	0.000037
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.90	0.000684
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	AY.92	0.000287
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.93	0.000273
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	AY.94	0.000443
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.94	0.000443
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	AY.95	0.000761
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	AY.98	0.000079
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	AY.99	0.001049
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	AY.99.2	0.000092
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B	0.000128
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	B	0.000128
ORF1ab/nsp10	134	R134del1	cgC	cg-	1	1	B.1	0.000009
ORF1ab/nsp10	134	R134N	CGc	AAc	1	1	B.1	0.000009
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	B.1.1	0.000018
ORF1ab/nsp10	134	R134del	CGC	---	1	1	B.1.1.1	0.000327
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	B.1.1.153	0.001095
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	B.1.1.169	0.018182
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.1.170	0.001247
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.1.176	0.000439
ORF1ab/nsp10	134	R134L	cGc	cTc	1	1	B.1.1.177	0.019231
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.1.189	0.001513
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.1.214	0.000055
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.1.214	0.000055
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.1.220	0.001859
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.1.222	0.000204
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.1.240	0.004695
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	B.1.1.25	0.000569
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.1.258	0.003257
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.1.263	0.001558
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.1.28	0.000311
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.1.286	0.002899
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.1.294	0.001266
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.1.297	0.002237
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.1.298	0.000862
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.1.301	0.001179
ORF1ab/nsp10	134	R134del1	cGC	c-T	1	1	B.1.1.301	0.001179
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	B.1.1.317	0.000412
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.1.328	0.016949
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.1.329	0.003846
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.1.33	0.000421
ORF1ab/nsp10	134	R134del	CGC	---	1	1	B.1.1.348	0.000796
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	B.1.1.348	0.000796
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.1.351	0.002793
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.1.376	0.005952
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.1.39	0.00051
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.1.409	0.002833
ORF1ab/nsp10	134	R134N	CGc	AAc	1	1	B.1.1.416	0.000905
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.1.434	0.000349
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.1.464	0.001473
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.1.487	0.005587
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.1.517	0.006803
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	B.1.1.519	0.00004
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	B.1.1.524	0.020833
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.1.528	0.004808
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.1.61	0.008772
ORF1ab/nsp10	134	R134P	cGc	cCc	1	1	B.1.1.7	0.000001
ORF1ab/nsp10	134	R134Y	CGc	TAc	1	1	B.1.1.7	0.000001
ORF1ab/nsp10	134	R134del	CGC	---	1	1	B.1.1.70	0.000341
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.1.70	0.000341
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	B.1.110.3	0.000718
ORF1ab/nsp10	134	R134N	CGc	AAc	1	1	B.1.111	0.001175
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.111	0.001175
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.119	0.010526
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.128	0.000635
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	B.1.146	0.004237
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	B.1.147	0.000756
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	B.1.153	0.018868
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	B.1.157	0.002985
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.157	0.002985
ORF1ab/nsp10	134	R134R	cgC	cgA	1	1	B.1.160.12	0.00641
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.160.18	0.007299
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	B.1.160.25	0.011111
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.160.32	0.004292
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.162	0.005025
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.170	0.00431
ORF1ab/nsp10	134	R134L	cGc	cTc	1	1	B.1.177	0.000013
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	B.1.177.17	0.000821
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.177.21	0.000076
ORF1ab/nsp10	134	R134N	CGc	AAc	1	1	B.1.177.24	0.001295
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	B.1.177.4	0.000211
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.177.40	0.005155
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.177.42	0.000894
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	B.1.177.44	0.000519
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	B.1.177.54	0.000606
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	B.1.177.60	0.000218
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.177.60	0.000218
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	B.1.177.60	0.000218
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	B.1.177.72	0.00339
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.177.72	0.00339
ORF1ab/nsp10	134	R134del	CGC	---	1	1	B.1.177.73	0.000566
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.177.77	0.000726
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.177.8	0.000752
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.177.81	0.000189
ORF1ab/nsp10	134	R134L	cGc	cTc	1	1	B.1.2	0.000009
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	B.1.206	0.000816
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.22	0.001318
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	B.1.221	0.000071
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	B.1.234	0.000132
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	B.1.235	0.002519
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.235	0.002519
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.237	0.004975
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.239	0.001221
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.258	0.000067
ORF1ab/nsp10	134	R134del	CGC	---	1	1	B.1.258.10	0.011364
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.258.14	0.00098
ORF1ab/nsp10	134	R134N	CGc	AAc	1	1	B.1.258.17	0.000104
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	B.1.258.21	0.007752
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.279	0.000514
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	B.1.280	0.007143
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.306	0.005714
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.311	0.000275
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.313	0.006579
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	B.1.326	0.007576
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	B.1.326	0.007576
ORF1ab/nsp10	134	R134N	CGc	AAc	1	1	B.1.326	0.007576
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.340	0.004292
ORF1ab/nsp10	134	R134T	CGc	ACc	1	1	B.1.351	0.00003
ORF1ab/nsp10	134	R134G	Cgc	Ggc	1	1	B.1.351	0.00003
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	B.1.351.2	0.000303
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.351.2	0.000303
ORF1ab/nsp10	134	R134del	CGC	---	1	1	B.1.36	0.000146
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.36.10	0.004785
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	B.1.36.18	0.00042
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.36.18	0.00042
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	B.1.36.26	0.002857
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.36.29	0.000517
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	B.1.36.29	0.000517
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.36.35	0.002604
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.36.35	0.002604
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	B.1.36.8	0.001
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	B.1.36.8	0.001
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.36.9	0.003215
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.369	0.000285
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.371	0.001122
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.375	0.00082
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.375	0.00082
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.399	0.001934
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	B.1.401	0.008197
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	B.1.416	0.001269
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.416.1	0.001563
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.422	0.000812
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.433	0.003195
ORF1ab/nsp10	134	R134del	CGC	---	1	1	B.1.456	0.003268
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.462	0.007246
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.471	0.002732
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	B.1.490	0.1
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	B.1.524	0.001406
ORF1ab/nsp10	134	R134S	CgC	AgT	1	1	B.1.524	0.001406
ORF1ab/nsp10	134	R134N	CGc	AAc	1	1	B.1.525	0.000113
ORF1ab/nsp10	134	R134del	CGC	---	1	1	B.1.533	0.009615
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	B.1.546	0.003704
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.564	0.000426
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.564	0.000426
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.567	0.003333
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.568	0.001111
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.575	0.000303
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.575	0.000303
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	B.1.582	0.000491
ORF1ab/nsp10	134	R134L	cGc	cTc	1	1	B.1.596	0.000087
ORF1ab/nsp10	134	R134N	CGc	AAc	1	1	B.1.596	0.000087
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	B.1.596.1	0.009346
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	B.1.617.1	0.000129
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	B.1.617.1	0.000129
ORF1ab/nsp10	134	R134Q	cGC	cAG	1	1	B.1.617.2	0.000004
ORF1ab/nsp10	134	R134L	cGC	cTG	1	1	B.1.617.2	0.000004
ORF1ab/nsp10	134	R134del2	CGc	--c	1	1	B.1.617.2	0.000004
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	B.1.617.3	0.002985
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.620	0.000946
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.621	0.000089
ORF1ab/nsp10	134	R134N	CGc	AAc	1	1	B.1.621.1	0.000506
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.621.1	0.000506
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.625	0.002353
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.627	0.00202
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	B.1.634	0.003425
ORF1ab/nsp10	134	R134N	CGc	AAc	1	1	B.1.637	0.000073
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.637	0.000073
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.78	0.008547
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	B.1.9.5	0.005682
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	B.1.94	0.027027
ORF1ab/nsp10	134	R134L	cGc	cTc	1	1	C.16	0.00106
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	C.36	0.000911
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	C.37	0.000116
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	C.37.1	0.002618
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	C.8	0.004464
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	D.2	0.000075
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	N.5	0.001767
ORF1ab/nsp10	134	R134N	CGc	AAc	1	1	P.1	0.000016
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	P.1.12	0.000484
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	P.1.12	0.000484
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	P.1.15	0.000232
ORF1ab/nsp10	134	R134del	CGC	---	1	1	P.1.15	0.000232
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	P.1.16	0.000374
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	P.1.16	0.000374
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	P.1.2	0.001156
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	P.1.7	0.000319
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	P.2	0.000187
ORF1ab/nsp10	134	R134del	CGC	---	1	1	P.2	0.000187
ORF1ab/nsp10	134	R134C	Cgc	Tgc	1	1	P.2	0.000187
ORF1ab/nsp10	134	R134N	CGc	AAc	1	1	P.3	0.001595
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	P.3	0.001595
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	Q.1	0.000126
ORF1ab/nsp10	134	R134R	cgC	cgT	1	1	Q.1	0.000126
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	Q.1	0.000126
ORF1ab/nsp10	134	R134H	cGc	cAc	1	1	Q.3	0.000145
ORF1ab/nsp10	134	R134S	Cgc	Agc	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.