CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp10 : CodonNum = 105

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp10	105	N105N	N4358N	syn	aaT	aaC	1499	1499	1	13337-13339
ORF1ab/nsp10	105	N105K	N4358K	nonsyn	aaT	aaA	424	336	0.792453	13337-13339
ORF1ab/nsp10	105	N105K	N4358K	nonsyn	aaT	aaG	424	88	0.207547	13337-13339
ORF1ab/nsp10	105	N105S	N4358S	nonsyn	aAt	aGt	232	230	0.991379	13337-13339
ORF1ab/nsp10	105	N105S	N4358S	nonsyn	AAt	TCt	232	1	0.00431034	13337-13339
ORF1ab/nsp10	105	N105S	N4358S	nonsyn	AAT	TCA	232	1	0.00431034	13337-13339
ORF1ab/nsp10	105	N105del	N4358del	del	AAT	---	60	60	1	13337-13339
ORF1ab/nsp10	105	N105T	N4358T	nonsyn	aAt	aCt	22	20	0.909091	13337-13339
ORF1ab/nsp10	105	N105T	N4358T	nonsyn	aAT	aCA	22	1	0.0454545	13337-13339
ORF1ab/nsp10	105	N105T	N4358T	nonsyn	aAT	aCC	22	1	0.0454545	13337-13339
ORF1ab/nsp10	105	N105Y	N4358Y	nonsyn	Aat	Tat	9	9	1	13337-13339
ORF1ab/nsp10	105	N105D	N4358D	nonsyn	Aat	Gat	7	7	1	13337-13339
ORF1ab/nsp10	105	N105del1	N4358del1	del	aaT	aa-	3	3	1	13337-13339
ORF1ab/nsp10	105	N105X	N4358X	nonsyn	AaT	TaA	3	3	1	13337-13339
ORF1ab/nsp10	105	N105I	N4358I	nonsyn	aAt	aTt	3	3	1	13337-13339
ORF1ab/nsp10	105	N105H	N4358H	nonsyn	Aat	Cat	2	2	1	13337-13339
ORF1ab/nsp10	105	N105del2	N4358del2	del	aAT	a--	2	1	0.5	13337-13339
ORF1ab/nsp10	105	N105del2	N4358del2	del	AAt	--t	2	1	0.5	13337-13339

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp10	105	N105N	aaT	aaC	1499	1499	All	0.000287
ORF1ab/nsp10	105	N105K	aaT	aaA	336	424	All	0.000064
ORF1ab/nsp10	105	N105K	aaT	aaG	88	424	All	0.000017
ORF1ab/nsp10	105	N105N	aaT	aaC	377	377	B.1.617.2	0.00142
ORF1ab/nsp10	105	N105K	aaT	aaA	214	249	B.1.1.7	0.000192
ORF1ab/nsp10	105	N105K	aaT	aaG	35	249	B.1.1.7	0.000031
ORF1ab/nsp10	105	N105S	aAt	aGt	230	232	All	0.000044
ORF1ab/nsp10	105	N105S	AAt	TCt	1	232	All	0
ORF1ab/nsp10	105	N105S	AAT	TCA	1	232	All	0
ORF1ab/nsp10	105	N105N	aaT	aaC	231	231	AY.39	0.005708
ORF1ab/nsp10	105	N105N	aaT	aaC	158	158	AY.98	0.012481
ORF1ab/nsp10	105	N105N	aaT	aaC	149	149	B.1.1.135	0.699531
ORF1ab/nsp10	105	N105N	aaT	aaC	130	130	B.1.1.7	0.000116
ORF1ab/nsp10	105	N105S	aAt	aGt	85	85	AY.4	0.000132
ORF1ab/nsp10	105	N105del	AAT	---	60	60	All	0.000011
ORF1ab/nsp10	105	N105S	aAt	aGt	57	57	AY.44	0.000347
ORF1ab/nsp10	105	N105N	aaT	aaC	43	43	AY.44	0.000262
ORF1ab/nsp10	105	N105N	aaT	aaC	35	35	AY.4	0.000054
ORF1ab/nsp10	105	N105K	aaT	aaG	32	32	B.1.177.81	0.006058
ORF1ab/nsp10	105	N105N	aaT	aaC	30	30	AY.20	0.001166
ORF1ab/nsp10	105	N105N	aaT	aaC	29	29	AY.25	0.000174
ORF1ab/nsp10	105	N105S	aAt	aGt	24	24	AY.69	0.00448
ORF1ab/nsp10	105	N105del	AAT	---	23	23	B.1.1.7	0.000021
ORF1ab/nsp10	105	N105T	aAt	aCt	20	22	All	0.000004
ORF1ab/nsp10	105	N105T	aAT	aCC	1	22	All	0
ORF1ab/nsp10	105	N105T	aAT	aCA	1	22	All	0
ORF1ab/nsp10	105	N105K	aaT	aaA	20	22	P.1	0.000315
ORF1ab/nsp10	105	N105K	aaT	aaG	2	22	P.1	0.000032
ORF1ab/nsp10	105	N105N	aaT	aaC	20	20	B.1.596	0.001743
ORF1ab/nsp10	105	N105K	aaT	aaA	18	18	P.2	0.003359
ORF1ab/nsp10	105	N105N	aaT	aaC	16	16	B.1	0.000147
ORF1ab/nsp10	105	N105N	aaT	aaC	15	15	AY.43	0.000066
ORF1ab/nsp10	105	N105N	aaT	aaC	15	15	B.1.1.392	0.789474
ORF1ab/nsp10	105	N105N	aaT	aaC	15	15	P.1.14	0.000717
ORF1ab/nsp10	105	N105N	aaT	aaC	13	13	B.1.258	0.000865
ORF1ab/nsp10	105	N105N	aaT	aaC	12	12	B.1.497	0.003777
ORF1ab/nsp10	105	N105N	aaT	aaC	12	12	B.1.637	0.000877
ORF1ab/nsp10	105	N105N	aaT	aaC	11	11	B.1.36.8	0.011
ORF1ab/nsp10	105	N105S	aAt	aGt	11	11	B.1.617.2	0.000041
ORF1ab/nsp10	105	N105N	aaT	aaC	10	10	AY.103	0.000062
ORF1ab/nsp10	105	N105S	aAt	aGt	10	10	AY.3	0.000099
ORF1ab/nsp10	105	N105N	aaT	aaC	10	10	AY.5	0.000206
ORF1ab/nsp10	105	N105K	aaT	aaA	10	10	B.1.1.157	0.009132
ORF1ab/nsp10	105	N105Y	Aat	Tat	9	9	All	0.000002
ORF1ab/nsp10	105	N105N	aaT	aaC	9	9	B.1.1.241	0.018634
ORF1ab/nsp10	105	N105N	aaT	aaC	8	8	AY.4.2	0.000174
ORF1ab/nsp10	105	N105N	aaT	aaC	8	8	B.1.1.214	0.000444
ORF1ab/nsp10	105	N105S	aAt	aGt	8	8	B.1.1.7	0.000007
ORF1ab/nsp10	105	N105N	aaT	aaC	8	8	B.1.2	0.00007
ORF1ab/nsp10	105	N105D	Aat	Gat	7	7	All	0.000001
ORF1ab/nsp10	105	N105N	aaT	aaC	7	7	AY.26	0.000198
ORF1ab/nsp10	105	N105K	aaT	aaA	7	7	B.1	0.000064
ORF1ab/nsp10	105	N105N	aaT	aaC	7	7	B.1.1	0.000127
ORF1ab/nsp10	105	N105K	aaT	aaA	7	7	B.1.429	0.000165
ORF1ab/nsp10	105	N105N	aaT	aaC	6	6	AY.102	0.000159
ORF1ab/nsp10	105	N105K	aaT	aaA	5	6	AY.3	0.00005
ORF1ab/nsp10	105	N105K	aaT	aaG	1	6	AY.3	0.00001
ORF1ab/nsp10	105	N105T	aAt	aCt	6	6	AY.4	0.000009
ORF1ab/nsp10	105	N105del	AAT	---	6	6	B.1.177	0.000079
ORF1ab/nsp10	105	N105K	aaT	aaA	6	6	B.1.2	0.000053
ORF1ab/nsp10	105	N105N	aaT	aaC	6	6	B.1.575	0.00182
ORF1ab/nsp10	105	N105N	aaT	aaC	5	5	AY.120	0.000186
ORF1ab/nsp10	105	N105S	aAt	aGt	5	5	AY.39	0.000124
ORF1ab/nsp10	105	N105S	aAt	aGt	5	5	B.1	0.000046
ORF1ab/nsp10	105	N105S	aAt	aGt	5	5	B.1.2	0.000044
ORF1ab/nsp10	105	N105K	aaT	aaA	3	5	B.1.351	0.000089
ORF1ab/nsp10	105	N105K	aaT	aaG	2	5	B.1.351	0.000059
ORF1ab/nsp10	105	N105N	aaT	aaC	4	4	C.36.3	0.002269
ORF1ab/nsp10	105	N105S	aAt	aGt	4	4	P.1	0.000063
ORF1ab/nsp10	105	N105K	aaT	aaA	4	4	P.1.15	0.000929
ORF1ab/nsp10	105	N105N	aaT	aaC	4	4	R.1	0.00036
ORF1ab/nsp10	105	N105K	aaT	aaA	3	3		0.166667
ORF1ab/nsp10	105	N105X	AaT	TaA	3	3		0.166667
ORF1ab/nsp10	105	N105Y	Aat	Tat	3	3		0.166667
ORF1ab/nsp10	105	N105I	aAt	aTt	3	3	All	0.000001
ORF1ab/nsp10	105	N105del1	aaT	aa-	3	3	All	0.000001
ORF1ab/nsp10	105	N105X	AaT	TaA	3	3	All	0.000001
ORF1ab/nsp10	105	N105N	aaT	aaC	3	3	AY.118	0.000188
ORF1ab/nsp10	105	N105N	aaT	aaC	3	3	AY.29	0.000047
ORF1ab/nsp10	105	N105Y	Aat	Tat	3	3	AY.3	0.00003
ORF1ab/nsp10	105	N105N	aaT	aaC	3	3	AY.40	0.002893
ORF1ab/nsp10	105	N105K	aaT	aaA	3	3	AY.43	0.000013
ORF1ab/nsp10	105	N105S	aAt	aGt	3	3	AY.43	0.000013
ORF1ab/nsp10	105	N105K	aaT	aaG	3	3	AY.54	0.000286
ORF1ab/nsp10	105	N105T	aAt	aCt	3	3	AY.99.2	0.000276
ORF1ab/nsp10	105	N105del	AAT	---	3	3	B.1.617.2	0.000011
ORF1ab/nsp10	105	N105N	aaT	aaC	3	3	B.1.628	0.001057
ORF1ab/nsp10	105	N105N	aaT	aaC	3	3	C.37	0.000348
ORF1ab/nsp10	105	N105N	aaT	aaC	3	3	P.1	0.000047
ORF1ab/nsp10	105	N105K	aaT	aaA	3	3	P.1.14	0.000143
ORF1ab/nsp10	105	N105K	aaT	aaG	3	3	Q.1	0.000379
ORF1ab/nsp10	105	N105S	AAt	TCt	1	2		0.055556
ORF1ab/nsp10	105	N105T	aAt	aCt	1	2		0.055556
ORF1ab/nsp10	105	N105T	aAT	aCA	1	2		0.055556
ORF1ab/nsp10	105	N105S	AAT	TCA	1	2		0.055556
ORF1ab/nsp10	105	N105H	Aat	Cat	2	2	All	0
ORF1ab/nsp10	105	N105del2	AAt	--t	1	2	All	0
ORF1ab/nsp10	105	N105del2	aAT	a--	1	2	All	0
ORF1ab/nsp10	105	N105N	aaT	aaC	2	2	AY.101	0.000981
ORF1ab/nsp10	105	N105S	aAt	aGt	2	2	AY.103	0.000012
ORF1ab/nsp10	105	N105K	aaT	aaG	1	2	AY.103	0.000006
ORF1ab/nsp10	105	N105K	aaT	aaA	1	2	AY.103	0.000006
ORF1ab/nsp10	105	N105N	aaT	aaC	2	2	AY.119	0.000071
ORF1ab/nsp10	105	N105N	aaT	aaC	2	2	AY.14	0.000176
ORF1ab/nsp10	105	N105N	aaT	aaC	2	2	AY.16	0.000759
ORF1ab/nsp10	105	N105S	aAt	aGt	2	2	AY.25	0.000012
ORF1ab/nsp10	105	N105K	aaT	aaA	2	2	AY.26	0.000057
ORF1ab/nsp10	105	N105K	aaT	aaG	2	2	AY.39	0.000049
ORF1ab/nsp10	105	N105N	aaT	aaC	2	2	AY.39.1	0.000079
ORF1ab/nsp10	105	N105del	AAT	---	2	2	AY.4	0.000003
ORF1ab/nsp10	105	N105del	AAT	---	2	2	AY.4.5	0.000215
ORF1ab/nsp10	105	N105del	AAT	---	2	2	AY.43	0.000009
ORF1ab/nsp10	105	N105K	aaT	aaA	1	2	AY.44	0.000006
ORF1ab/nsp10	105	N105K	aaT	aaG	1	2	AY.44	0.000006
ORF1ab/nsp10	105	N105N	aaT	aaC	2	2	AY.46.6	0.000144
ORF1ab/nsp10	105	N105N	aaT	aaC	2	2	AY.9.2	0.000073
ORF1ab/nsp10	105	N105N	aaT	aaC	2	2	AY.99.2	0.000184
ORF1ab/nsp10	105	N105D	Aat	Gat	2	2	B.1	0.000018
ORF1ab/nsp10	105	N105K	aaT	aaA	2	2	B.1.1	0.000036
ORF1ab/nsp10	105	N105N	aaT	aaC	2	2	B.1.1.398	0.006452
ORF1ab/nsp10	105	N105N	aaT	aaC	2	2	B.1.1.519	0.000079
ORF1ab/nsp10	105	N105T	aAt	aCt	2	2	B.1.1.7	0.000002
ORF1ab/nsp10	105	N105D	Aat	Gat	2	2	B.1.177.15	0.001262
ORF1ab/nsp10	105	N105K	aaT	aaG	2	2	B.1.177.50	0.00939
ORF1ab/nsp10	105	N105K	aaT	aaA	2	2	B.1.221	0.000142
ORF1ab/nsp10	105	N105N	aaT	aaC	2	2	B.1.258.17	0.000208
ORF1ab/nsp10	105	N105N	aaT	aaC	2	2	B.1.351	0.000059
ORF1ab/nsp10	105	N105K	aaT	aaA	2	2	B.1.526	0.000047
ORF1ab/nsp10	105	N105K	aaT	aaA	2	2	B.1.620	0.001892
ORF1ab/nsp10	105	N105K	aaT	aaA	2	2	C.37	0.000232
ORF1ab/nsp10	105	N105S	aAt	aGt	1	1	AY.102	0.000027
ORF1ab/nsp10	105	N105T	aAt	aCt	1	1	AY.103	0.000006
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	AY.107	0.000466
ORF1ab/nsp10	105	N105K	aaT	aaA	1	1	AY.118	0.000063
ORF1ab/nsp10	105	N105del	AAT	---	1	1	AY.118	0.000063
ORF1ab/nsp10	105	N105K	aaT	aaG	1	1	AY.120	0.000037
ORF1ab/nsp10	105	N105S	aAt	aGt	1	1	AY.120.2.1	0.000498
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	AY.121	0.000135
ORF1ab/nsp10	105	N105K	aaT	aaA	1	1	AY.13	0.000161
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	AY.13	0.000161
ORF1ab/nsp10	105	N105H	Aat	Cat	1	1	AY.14	0.000088
ORF1ab/nsp10	105	N105K	aaT	aaA	1	1	AY.14	0.000088
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	AY.16.1	0.00047
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	AY.19	0.00114
ORF1ab/nsp10	105	N105K	aaT	aaA	1	1	AY.25	0.000006
ORF1ab/nsp10	105	N105del	AAT	---	1	1	AY.25	0.000006
ORF1ab/nsp10	105	N105D	Aat	Gat	1	1	AY.25	0.000006
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	AY.27	0.000065
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	AY.33	0.000067
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	AY.37	0.000316
ORF1ab/nsp10	105	N105K	aaT	aaA	1	1	AY.4	0.000002
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	AY.4.2.1	0.000149
ORF1ab/nsp10	105	N105del1	aaT	aa-	1	1	AY.4.5	0.000107
ORF1ab/nsp10	105	N105del2	AAt	--t	1	1	AY.4.5	0.000107
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	AY.42	0.00004
ORF1ab/nsp10	105	N105T	aAT	aCC	1	1	AY.44	0.000006
ORF1ab/nsp10	105	N105S	aAt	aGt	1	1	AY.46	0.000104
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	AY.46.2	0.000635
ORF1ab/nsp10	105	N105S	aAt	aGt	1	1	AY.46.4	0.000165
ORF1ab/nsp10	105	N105K	aaT	aaG	1	1	AY.47	0.000031
ORF1ab/nsp10	105	N105K	aaT	aaG	1	1	AY.5	0.000021
ORF1ab/nsp10	105	N105K	aaT	aaA	1	1	AY.53	0.000288
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	AY.54	0.000095
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	AY.6	0.000041
ORF1ab/nsp10	105	N105del	AAT	---	1	1	AY.60	0.000938
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	AY.67	0.000464
ORF1ab/nsp10	105	N105K	aaT	aaA	1	1	AY.69	0.000187
ORF1ab/nsp10	105	N105I	aAt	aTt	1	1	AY.7	0.000196
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	AY.70	0.000209
ORF1ab/nsp10	105	N105del	AAT	---	1	1	AY.75	0.000056
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	AY.75	0.000056
ORF1ab/nsp10	105	N105D	Aat	Gat	1	1	AY.75.1	0.00018
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	AY.75.1	0.00018
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	AY.84	0.000437
ORF1ab/nsp10	105	N105T	aAt	aCt	1	1	AY.9	0.000068
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	AY.9.1	0.000084
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	AY.92	0.000287
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	AY.95	0.000761
ORF1ab/nsp10	105	N105del	AAT	---	1	1	AY.99	0.001049
ORF1ab/nsp10	105	N105I	aAt	aTt	1	1	B.1.1	0.000018
ORF1ab/nsp10	105	N105T	aAt	aCt	1	1	B.1.1	0.000018
ORF1ab/nsp10	105	N105del	AAT	---	1	1	B.1.1.1	0.000327
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.1.10	0.001115
ORF1ab/nsp10	105	N105K	aaT	aaA	1	1	B.1.1.232	0.001815
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.1.284	0.000107
ORF1ab/nsp10	105	N105del	AAT	---	1	1	B.1.1.311	0.000358
ORF1ab/nsp10	105	N105del	AAT	---	1	1	B.1.1.312	0.001912
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.1.33	0.000421
ORF1ab/nsp10	105	N105del	AAT	---	1	1	B.1.1.348	0.000796
ORF1ab/nsp10	105	N105K	aaT	aaG	1	1	B.1.1.37	0.000193
ORF1ab/nsp10	105	N105I	aAt	aTt	1	1	B.1.1.377	0.001381
ORF1ab/nsp10	105	N105K	aaT	aaA	1	1	B.1.1.389	0.006061
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.1.50	0.000679
ORF1ab/nsp10	105	N105Y	Aat	Tat	1	1	B.1.1.7	0.000001
ORF1ab/nsp10	105	N105D	Aat	Gat	1	1	B.1.1.7	0.000001
ORF1ab/nsp10	105	N105del2	aAT	a--	1	1	B.1.1.7	0.000001
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.160	0.000031
ORF1ab/nsp10	105	N105K	aaT	aaA	1	1	B.1.160	0.000031
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.177	0.000013
ORF1ab/nsp10	105	N105S	aAt	aGt	1	1	B.1.177	0.000013
ORF1ab/nsp10	105	N105del1	aaT	aa-	1	1	B.1.177	0.000013
ORF1ab/nsp10	105	N105del	AAT	---	1	1	B.1.177.17	0.000821
ORF1ab/nsp10	105	N105Y	Aat	Tat	1	1	B.1.177.20	0.001517
ORF1ab/nsp10	105	N105K	aaT	aaA	1	1	B.1.177.4	0.000211
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.177.4	0.000211
ORF1ab/nsp10	105	N105S	aAt	aGt	1	1	B.1.177.4	0.000211
ORF1ab/nsp10	105	N105K	aaT	aaA	1	1	B.1.177.44	0.000519
ORF1ab/nsp10	105	N105T	aAt	aCt	1	1	B.1.177.46	0.000918
ORF1ab/nsp10	105	N105del	AAT	---	1	1	B.1.177.6	0.000977
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.177.7	0.000165
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.177.81	0.000189
ORF1ab/nsp10	105	N105del	AAT	---	1	1	B.1.177.83	0.001481
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.177.86	0.000183
ORF1ab/nsp10	105	N105T	aAt	aCt	1	1	B.1.2	0.000009
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.210	0.002132
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.234	0.000132
ORF1ab/nsp10	105	N105K	aaT	aaA	1	1	B.1.241	0.000812
ORF1ab/nsp10	105	N105S	aAt	aGt	1	1	B.1.243	0.00007
ORF1ab/nsp10	105	N105S	aAt	aGt	1	1	B.1.258	0.000067
ORF1ab/nsp10	105	N105del	AAT	---	1	1	B.1.258	0.000067
ORF1ab/nsp10	105	N105del	AAT	---	1	1	B.1.258.10	0.011364
ORF1ab/nsp10	105	N105del	AAT	---	1	1	B.1.258.3	0.001675
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.281	0.021739
ORF1ab/nsp10	105	N105T	aAt	aCt	1	1	B.1.351.2	0.000303
ORF1ab/nsp10	105	N105S	aAt	aGt	1	1	B.1.356	0.001727
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.36	0.000146
ORF1ab/nsp10	105	N105del1	aaT	aa-	1	1	B.1.36	0.000146
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.36.31	0.001751
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.36.7	0.004
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.367	0.000792
ORF1ab/nsp10	105	N105del	AAT	---	1	1	B.1.389	0.001002
ORF1ab/nsp10	105	N105del	AAT	---	1	1	B.1.415	0.014286
ORF1ab/nsp10	105	N105Y	Aat	Tat	1	1	B.1.427	0.00005
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.427	0.00005
ORF1ab/nsp10	105	N105del	AAT	---	1	1	B.1.427	0.00005
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.429	0.000024
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.438.1	0.000107
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.456	0.003268
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.466.2	0.000391
ORF1ab/nsp10	105	N105K	aaT	aaA	1	1	B.1.497	0.000315
ORF1ab/nsp10	105	N105K	aaT	aaA	1	1	B.1.499	0.00105
ORF1ab/nsp10	105	N105K	aaT	aaA	1	1	B.1.525	0.000113
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.561	0.000397
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.582	0.000491
ORF1ab/nsp10	105	N105del	AAT	---	1	1	B.1.585	0.027778
ORF1ab/nsp10	105	N105T	aAt	aCt	1	1	B.1.617.2	0.000004
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.627	0.00202
ORF1ab/nsp10	105	N105del	AAT	---	1	1	B.1.630	0.005236
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.1.9.4	0.006135
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	B.6	0.00091
ORF1ab/nsp10	105	N105H	Aat	Cat	1	1	B.6	0.00091
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	C.14	0.004329
ORF1ab/nsp10	105	N105K	aaT	aaA	1	1	N.4	0.004255
ORF1ab/nsp10	105	N105T	aAt	aCt	1	1	N.6	0.007092
ORF1ab/nsp10	105	N105del	AAT	---	1	1	P.1.1	0.000318
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	P.1.17.1	0.000875
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	P.2	0.000187
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	Q.1	0.000126
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	Q.3	0.000145
ORF1ab/nsp10	105	N105N	aaT	aaC	1	1	Q.8	0.000165
ORF1ab/nsp10	105	N105del	AAT	---	1	1	Q.8	0.000165
ORF1ab/nsp10	105	N105K	aaT	aaA	1	1	Q.8	0.000165
ORF1ab/nsp10	105	N105K	aaT	aaA	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.