CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp10 : CodonNum = 105

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp10105N105NN4358NsynaaTaaC14991499113337-13339
ORF1ab/nsp10105N105KN4358KnonsynaaTaaA4243360.79245313337-13339
ORF1ab/nsp10105N105KN4358KnonsynaaTaaG424880.20754713337-13339
ORF1ab/nsp10105N105SN4358SnonsynaAtaGt2322300.99137913337-13339
ORF1ab/nsp10105N105SN4358SnonsynAAtTCt23210.0043103413337-13339
ORF1ab/nsp10105N105SN4358SnonsynAATTCA23210.0043103413337-13339
ORF1ab/nsp10105N105delN4358deldelAAT---6060113337-13339
ORF1ab/nsp10105N105TN4358TnonsynaAtaCt22200.90909113337-13339
ORF1ab/nsp10105N105TN4358TnonsynaATaCA2210.045454513337-13339
ORF1ab/nsp10105N105TN4358TnonsynaATaCC2210.045454513337-13339
ORF1ab/nsp10105N105YN4358YnonsynAatTat99113337-13339
ORF1ab/nsp10105N105DN4358DnonsynAatGat77113337-13339
ORF1ab/nsp10105N105del1N4358del1delaaTaa-33113337-13339
ORF1ab/nsp10105N105XN4358XnonsynAaTTaA33113337-13339
ORF1ab/nsp10105N105IN4358InonsynaAtaTt33113337-13339
ORF1ab/nsp10105N105HN4358HnonsynAatCat22113337-13339
ORF1ab/nsp10105N105del2N4358del2delaATa--210.513337-13339
ORF1ab/nsp10105N105del2N4358del2delAAt--t210.513337-13339

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp10105N105NaaTaaC14991499All0.000287
ORF1ab/nsp10105N105KaaTaaA336424All0.000064
ORF1ab/nsp10105N105KaaTaaG88424All0.000017
ORF1ab/nsp10105N105NaaTaaC377377B.1.617.20.00142
ORF1ab/nsp10105N105KaaTaaA214249B.1.1.70.000192
ORF1ab/nsp10105N105KaaTaaG35249B.1.1.70.000031
ORF1ab/nsp10105N105SaAtaGt230232All0.000044
ORF1ab/nsp10105N105SAAtTCt1232All0
ORF1ab/nsp10105N105SAATTCA1232All0
ORF1ab/nsp10105N105NaaTaaC231231AY.390.005708
ORF1ab/nsp10105N105NaaTaaC158158AY.980.012481
ORF1ab/nsp10105N105NaaTaaC149149B.1.1.1350.699531
ORF1ab/nsp10105N105NaaTaaC130130B.1.1.70.000116
ORF1ab/nsp10105N105SaAtaGt8585AY.40.000132
ORF1ab/nsp10105N105delAAT---6060All0.000011
ORF1ab/nsp10105N105SaAtaGt5757AY.440.000347
ORF1ab/nsp10105N105NaaTaaC4343AY.440.000262
ORF1ab/nsp10105N105NaaTaaC3535AY.40.000054
ORF1ab/nsp10105N105KaaTaaG3232B.1.177.810.006058
ORF1ab/nsp10105N105NaaTaaC3030AY.200.001166
ORF1ab/nsp10105N105NaaTaaC2929AY.250.000174
ORF1ab/nsp10105N105SaAtaGt2424AY.690.00448
ORF1ab/nsp10105N105delAAT---2323B.1.1.70.000021
ORF1ab/nsp10105N105TaAtaCt2022All0.000004
ORF1ab/nsp10105N105TaATaCC122All0
ORF1ab/nsp10105N105TaATaCA122All0
ORF1ab/nsp10105N105KaaTaaA2022P.10.000315
ORF1ab/nsp10105N105KaaTaaG222P.10.000032
ORF1ab/nsp10105N105NaaTaaC2020B.1.5960.001743
ORF1ab/nsp10105N105KaaTaaA1818P.20.003359
ORF1ab/nsp10105N105NaaTaaC1616B.10.000147
ORF1ab/nsp10105N105NaaTaaC1515AY.430.000066
ORF1ab/nsp10105N105NaaTaaC1515B.1.1.3920.789474
ORF1ab/nsp10105N105NaaTaaC1515P.1.140.000717
ORF1ab/nsp10105N105NaaTaaC1313B.1.2580.000865
ORF1ab/nsp10105N105NaaTaaC1212B.1.4970.003777
ORF1ab/nsp10105N105NaaTaaC1212B.1.6370.000877
ORF1ab/nsp10105N105NaaTaaC1111B.1.36.80.011
ORF1ab/nsp10105N105SaAtaGt1111B.1.617.20.000041
ORF1ab/nsp10105N105NaaTaaC1010AY.1030.000062
ORF1ab/nsp10105N105SaAtaGt1010AY.30.000099
ORF1ab/nsp10105N105NaaTaaC1010AY.50.000206
ORF1ab/nsp10105N105KaaTaaA1010B.1.1.1570.009132
ORF1ab/nsp10105N105YAatTat99All0.000002
ORF1ab/nsp10105N105NaaTaaC99B.1.1.2410.018634
ORF1ab/nsp10105N105NaaTaaC88AY.4.20.000174
ORF1ab/nsp10105N105NaaTaaC88B.1.1.2140.000444
ORF1ab/nsp10105N105SaAtaGt88B.1.1.70.000007
ORF1ab/nsp10105N105NaaTaaC88B.1.20.00007
ORF1ab/nsp10105N105DAatGat77All0.000001
ORF1ab/nsp10105N105NaaTaaC77AY.260.000198
ORF1ab/nsp10105N105KaaTaaA77B.10.000064
ORF1ab/nsp10105N105NaaTaaC77B.1.10.000127
ORF1ab/nsp10105N105KaaTaaA77B.1.4290.000165
ORF1ab/nsp10105N105NaaTaaC66AY.1020.000159
ORF1ab/nsp10105N105KaaTaaA56AY.30.00005
ORF1ab/nsp10105N105KaaTaaG16AY.30.00001
ORF1ab/nsp10105N105TaAtaCt66AY.40.000009
ORF1ab/nsp10105N105delAAT---66B.1.1770.000079
ORF1ab/nsp10105N105KaaTaaA66B.1.20.000053
ORF1ab/nsp10105N105NaaTaaC66B.1.5750.00182
ORF1ab/nsp10105N105NaaTaaC55AY.1200.000186
ORF1ab/nsp10105N105SaAtaGt55AY.390.000124
ORF1ab/nsp10105N105SaAtaGt55B.10.000046
ORF1ab/nsp10105N105SaAtaGt55B.1.20.000044
ORF1ab/nsp10105N105KaaTaaA35B.1.3510.000089
ORF1ab/nsp10105N105KaaTaaG25B.1.3510.000059
ORF1ab/nsp10105N105NaaTaaC44C.36.30.002269
ORF1ab/nsp10105N105SaAtaGt44P.10.000063
ORF1ab/nsp10105N105KaaTaaA44P.1.150.000929
ORF1ab/nsp10105N105NaaTaaC44R.10.00036
ORF1ab/nsp10105N105KaaTaaA330.166667
ORF1ab/nsp10105N105XAaTTaA330.166667
ORF1ab/nsp10105N105YAatTat330.166667
ORF1ab/nsp10105N105IaAtaTt33All0.000001
ORF1ab/nsp10105N105del1aaTaa-33All0.000001
ORF1ab/nsp10105N105XAaTTaA33All0.000001
ORF1ab/nsp10105N105NaaTaaC33AY.1180.000188
ORF1ab/nsp10105N105NaaTaaC33AY.290.000047
ORF1ab/nsp10105N105YAatTat33AY.30.00003
ORF1ab/nsp10105N105NaaTaaC33AY.400.002893
ORF1ab/nsp10105N105KaaTaaA33AY.430.000013
ORF1ab/nsp10105N105SaAtaGt33AY.430.000013
ORF1ab/nsp10105N105KaaTaaG33AY.540.000286
ORF1ab/nsp10105N105TaAtaCt33AY.99.20.000276
ORF1ab/nsp10105N105delAAT---33B.1.617.20.000011
ORF1ab/nsp10105N105NaaTaaC33B.1.6280.001057
ORF1ab/nsp10105N105NaaTaaC33C.370.000348
ORF1ab/nsp10105N105NaaTaaC33P.10.000047
ORF1ab/nsp10105N105KaaTaaA33P.1.140.000143
ORF1ab/nsp10105N105KaaTaaG33Q.10.000379
ORF1ab/nsp10105N105SAAtTCt120.055556
ORF1ab/nsp10105N105TaAtaCt120.055556
ORF1ab/nsp10105N105TaATaCA120.055556
ORF1ab/nsp10105N105SAATTCA120.055556
ORF1ab/nsp10105N105HAatCat22All0
ORF1ab/nsp10105N105del2AAt--t12All0
ORF1ab/nsp10105N105del2aATa--12All0
ORF1ab/nsp10105N105NaaTaaC22AY.1010.000981
ORF1ab/nsp10105N105SaAtaGt22AY.1030.000012
ORF1ab/nsp10105N105KaaTaaG12AY.1030.000006
ORF1ab/nsp10105N105KaaTaaA12AY.1030.000006
ORF1ab/nsp10105N105NaaTaaC22AY.1190.000071
ORF1ab/nsp10105N105NaaTaaC22AY.140.000176
ORF1ab/nsp10105N105NaaTaaC22AY.160.000759
ORF1ab/nsp10105N105SaAtaGt22AY.250.000012
ORF1ab/nsp10105N105KaaTaaA22AY.260.000057
ORF1ab/nsp10105N105KaaTaaG22AY.390.000049
ORF1ab/nsp10105N105NaaTaaC22AY.39.10.000079
ORF1ab/nsp10105N105delAAT---22AY.40.000003
ORF1ab/nsp10105N105delAAT---22AY.4.50.000215
ORF1ab/nsp10105N105delAAT---22AY.430.000009
ORF1ab/nsp10105N105KaaTaaA12AY.440.000006
ORF1ab/nsp10105N105KaaTaaG12AY.440.000006
ORF1ab/nsp10105N105NaaTaaC22AY.46.60.000144
ORF1ab/nsp10105N105NaaTaaC22AY.9.20.000073
ORF1ab/nsp10105N105NaaTaaC22AY.99.20.000184
ORF1ab/nsp10105N105DAatGat22B.10.000018
ORF1ab/nsp10105N105KaaTaaA22B.1.10.000036
ORF1ab/nsp10105N105NaaTaaC22B.1.1.3980.006452
ORF1ab/nsp10105N105NaaTaaC22B.1.1.5190.000079
ORF1ab/nsp10105N105TaAtaCt22B.1.1.70.000002
ORF1ab/nsp10105N105DAatGat22B.1.177.150.001262
ORF1ab/nsp10105N105KaaTaaG22B.1.177.500.00939
ORF1ab/nsp10105N105KaaTaaA22B.1.2210.000142
ORF1ab/nsp10105N105NaaTaaC22B.1.258.170.000208
ORF1ab/nsp10105N105NaaTaaC22B.1.3510.000059
ORF1ab/nsp10105N105KaaTaaA22B.1.5260.000047
ORF1ab/nsp10105N105KaaTaaA22B.1.6200.001892
ORF1ab/nsp10105N105KaaTaaA22C.370.000232
ORF1ab/nsp10105N105SaAtaGt11AY.1020.000027
ORF1ab/nsp10105N105TaAtaCt11AY.1030.000006
ORF1ab/nsp10105N105NaaTaaC11AY.1070.000466
ORF1ab/nsp10105N105KaaTaaA11AY.1180.000063
ORF1ab/nsp10105N105delAAT---11AY.1180.000063
ORF1ab/nsp10105N105KaaTaaG11AY.1200.000037
ORF1ab/nsp10105N105SaAtaGt11AY.120.2.10.000498
ORF1ab/nsp10105N105NaaTaaC11AY.1210.000135
ORF1ab/nsp10105N105KaaTaaA11AY.130.000161
ORF1ab/nsp10105N105NaaTaaC11AY.130.000161
ORF1ab/nsp10105N105HAatCat11AY.140.000088
ORF1ab/nsp10105N105KaaTaaA11AY.140.000088
ORF1ab/nsp10105N105NaaTaaC11AY.16.10.00047
ORF1ab/nsp10105N105NaaTaaC11AY.190.00114
ORF1ab/nsp10105N105KaaTaaA11AY.250.000006
ORF1ab/nsp10105N105delAAT---11AY.250.000006
ORF1ab/nsp10105N105DAatGat11AY.250.000006
ORF1ab/nsp10105N105NaaTaaC11AY.270.000065
ORF1ab/nsp10105N105NaaTaaC11AY.330.000067
ORF1ab/nsp10105N105NaaTaaC11AY.370.000316
ORF1ab/nsp10105N105KaaTaaA11AY.40.000002
ORF1ab/nsp10105N105NaaTaaC11AY.4.2.10.000149
ORF1ab/nsp10105N105del1aaTaa-11AY.4.50.000107
ORF1ab/nsp10105N105del2AAt--t11AY.4.50.000107
ORF1ab/nsp10105N105NaaTaaC11AY.420.00004
ORF1ab/nsp10105N105TaATaCC11AY.440.000006
ORF1ab/nsp10105N105SaAtaGt11AY.460.000104
ORF1ab/nsp10105N105NaaTaaC11AY.46.20.000635
ORF1ab/nsp10105N105SaAtaGt11AY.46.40.000165
ORF1ab/nsp10105N105KaaTaaG11AY.470.000031
ORF1ab/nsp10105N105KaaTaaG11AY.50.000021
ORF1ab/nsp10105N105KaaTaaA11AY.530.000288
ORF1ab/nsp10105N105NaaTaaC11AY.540.000095
ORF1ab/nsp10105N105NaaTaaC11AY.60.000041
ORF1ab/nsp10105N105delAAT---11AY.600.000938
ORF1ab/nsp10105N105NaaTaaC11AY.670.000464
ORF1ab/nsp10105N105KaaTaaA11AY.690.000187
ORF1ab/nsp10105N105IaAtaTt11AY.70.000196
ORF1ab/nsp10105N105NaaTaaC11AY.700.000209
ORF1ab/nsp10105N105delAAT---11AY.750.000056
ORF1ab/nsp10105N105NaaTaaC11AY.750.000056
ORF1ab/nsp10105N105DAatGat11AY.75.10.00018
ORF1ab/nsp10105N105NaaTaaC11AY.75.10.00018
ORF1ab/nsp10105N105NaaTaaC11AY.840.000437
ORF1ab/nsp10105N105TaAtaCt11AY.90.000068
ORF1ab/nsp10105N105NaaTaaC11AY.9.10.000084
ORF1ab/nsp10105N105NaaTaaC11AY.920.000287
ORF1ab/nsp10105N105NaaTaaC11AY.950.000761
ORF1ab/nsp10105N105delAAT---11AY.990.001049
ORF1ab/nsp10105N105IaAtaTt11B.1.10.000018
ORF1ab/nsp10105N105TaAtaCt11B.1.10.000018
ORF1ab/nsp10105N105delAAT---11B.1.1.10.000327
ORF1ab/nsp10105N105NaaTaaC11B.1.1.100.001115
ORF1ab/nsp10105N105KaaTaaA11B.1.1.2320.001815
ORF1ab/nsp10105N105NaaTaaC11B.1.1.2840.000107
ORF1ab/nsp10105N105delAAT---11B.1.1.3110.000358
ORF1ab/nsp10105N105delAAT---11B.1.1.3120.001912
ORF1ab/nsp10105N105NaaTaaC11B.1.1.330.000421
ORF1ab/nsp10105N105delAAT---11B.1.1.3480.000796
ORF1ab/nsp10105N105KaaTaaG11B.1.1.370.000193
ORF1ab/nsp10105N105IaAtaTt11B.1.1.3770.001381
ORF1ab/nsp10105N105KaaTaaA11B.1.1.3890.006061
ORF1ab/nsp10105N105NaaTaaC11B.1.1.500.000679
ORF1ab/nsp10105N105YAatTat11B.1.1.70.000001
ORF1ab/nsp10105N105DAatGat11B.1.1.70.000001
ORF1ab/nsp10105N105del2aATa--11B.1.1.70.000001
ORF1ab/nsp10105N105NaaTaaC11B.1.1600.000031
ORF1ab/nsp10105N105KaaTaaA11B.1.1600.000031
ORF1ab/nsp10105N105NaaTaaC11B.1.1770.000013
ORF1ab/nsp10105N105SaAtaGt11B.1.1770.000013
ORF1ab/nsp10105N105del1aaTaa-11B.1.1770.000013
ORF1ab/nsp10105N105delAAT---11B.1.177.170.000821
ORF1ab/nsp10105N105YAatTat11B.1.177.200.001517
ORF1ab/nsp10105N105KaaTaaA11B.1.177.40.000211
ORF1ab/nsp10105N105NaaTaaC11B.1.177.40.000211
ORF1ab/nsp10105N105SaAtaGt11B.1.177.40.000211
ORF1ab/nsp10105N105KaaTaaA11B.1.177.440.000519
ORF1ab/nsp10105N105TaAtaCt11B.1.177.460.000918
ORF1ab/nsp10105N105delAAT---11B.1.177.60.000977
ORF1ab/nsp10105N105NaaTaaC11B.1.177.70.000165
ORF1ab/nsp10105N105NaaTaaC11B.1.177.810.000189
ORF1ab/nsp10105N105delAAT---11B.1.177.830.001481
ORF1ab/nsp10105N105NaaTaaC11B.1.177.860.000183
ORF1ab/nsp10105N105TaAtaCt11B.1.20.000009
ORF1ab/nsp10105N105NaaTaaC11B.1.2100.002132
ORF1ab/nsp10105N105NaaTaaC11B.1.2340.000132
ORF1ab/nsp10105N105KaaTaaA11B.1.2410.000812
ORF1ab/nsp10105N105SaAtaGt11B.1.2430.00007
ORF1ab/nsp10105N105SaAtaGt11B.1.2580.000067
ORF1ab/nsp10105N105delAAT---11B.1.2580.000067
ORF1ab/nsp10105N105delAAT---11B.1.258.100.011364
ORF1ab/nsp10105N105delAAT---11B.1.258.30.001675
ORF1ab/nsp10105N105NaaTaaC11B.1.2810.021739
ORF1ab/nsp10105N105TaAtaCt11B.1.351.20.000303
ORF1ab/nsp10105N105SaAtaGt11B.1.3560.001727
ORF1ab/nsp10105N105NaaTaaC11B.1.360.000146
ORF1ab/nsp10105N105del1aaTaa-11B.1.360.000146
ORF1ab/nsp10105N105NaaTaaC11B.1.36.310.001751
ORF1ab/nsp10105N105NaaTaaC11B.1.36.70.004
ORF1ab/nsp10105N105NaaTaaC11B.1.3670.000792
ORF1ab/nsp10105N105delAAT---11B.1.3890.001002
ORF1ab/nsp10105N105delAAT---11B.1.4150.014286
ORF1ab/nsp10105N105YAatTat11B.1.4270.00005
ORF1ab/nsp10105N105NaaTaaC11B.1.4270.00005
ORF1ab/nsp10105N105delAAT---11B.1.4270.00005
ORF1ab/nsp10105N105NaaTaaC11B.1.4290.000024
ORF1ab/nsp10105N105NaaTaaC11B.1.438.10.000107
ORF1ab/nsp10105N105NaaTaaC11B.1.4560.003268
ORF1ab/nsp10105N105NaaTaaC11B.1.466.20.000391
ORF1ab/nsp10105N105KaaTaaA11B.1.4970.000315
ORF1ab/nsp10105N105KaaTaaA11B.1.4990.00105
ORF1ab/nsp10105N105KaaTaaA11B.1.5250.000113
ORF1ab/nsp10105N105NaaTaaC11B.1.5610.000397
ORF1ab/nsp10105N105NaaTaaC11B.1.5820.000491
ORF1ab/nsp10105N105delAAT---11B.1.5850.027778
ORF1ab/nsp10105N105TaAtaCt11B.1.617.20.000004
ORF1ab/nsp10105N105NaaTaaC11B.1.6270.00202
ORF1ab/nsp10105N105delAAT---11B.1.6300.005236
ORF1ab/nsp10105N105NaaTaaC11B.1.9.40.006135
ORF1ab/nsp10105N105NaaTaaC11B.60.00091
ORF1ab/nsp10105N105HAatCat11B.60.00091
ORF1ab/nsp10105N105NaaTaaC11C.140.004329
ORF1ab/nsp10105N105KaaTaaA11N.40.004255
ORF1ab/nsp10105N105TaAtaCt11N.60.007092
ORF1ab/nsp10105N105delAAT---11P.1.10.000318
ORF1ab/nsp10105N105NaaTaaC11P.1.17.10.000875
ORF1ab/nsp10105N105NaaTaaC11P.20.000187
ORF1ab/nsp10105N105NaaTaaC11Q.10.000126
ORF1ab/nsp10105N105NaaTaaC11Q.30.000145
ORF1ab/nsp10105N105NaaTaaC11Q.80.000165
ORF1ab/nsp10105N105delAAT---11Q.80.000165
ORF1ab/nsp10105N105KaaTaaA11Q.80.000165
ORF1ab/nsp10105N105KaaTaaA11W.40.001351