CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : Mut = V86V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp186V86VV86VsyngtTgtG6682780.416168521-523
ORF1ab/nsp186V86VV86VsyngtTgtA6682480.371257521-523
ORF1ab/nsp186V86VV86VsyngtTgtC6681420.212575521-523

Details of the mutation V86V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp186V86VgtTgtG278668All0.000053
ORF1ab/nsp186V86VgtTgtA248668All0.000047
ORF1ab/nsp186V86VgtTgtC142668All0.000027
ORF1ab/nsp186V86VgtTgtA164249AY.40.000255
ORF1ab/nsp186V86VgtTgtG46249AY.40.000072
ORF1ab/nsp186V86VgtTgtC39249AY.40.000061
ORF1ab/nsp186V86VgtTgtG88123B.1.1.70.000079
ORF1ab/nsp186V86VgtTgtC24123B.1.1.70.000021
ORF1ab/nsp186V86VgtTgtA11123B.1.1.70.00001
ORF1ab/nsp186V86VgtTgtG3940AY.430.000173
ORF1ab/nsp186V86VgtTgtA140AY.430.000004
ORF1ab/nsp186V86VgtTgtA2128B.1.177.210.001606
ORF1ab/nsp186V86VgtTgtG728B.1.177.210.000535
ORF1ab/nsp186V86VgtTgtG2121B.1.1.630.008102
ORF1ab/nsp186V86VgtTgtG918B.1.617.20.000034
ORF1ab/nsp186V86VgtTgtC518B.1.617.20.000019
ORF1ab/nsp186V86VgtTgtA418B.1.617.20.000015
ORF1ab/nsp186V86VgtTgtG817AY.250.000048
ORF1ab/nsp186V86VgtTgtC617AY.250.000036
ORF1ab/nsp186V86VgtTgtA317AY.250.000018
ORF1ab/nsp186V86VgtTgtC1012AY.1030.000062
ORF1ab/nsp186V86VgtTgtG112AY.1030.000006
ORF1ab/nsp186V86VgtTgtA112AY.1030.000006
ORF1ab/nsp186V86VgtTgtC711AY.440.000043
ORF1ab/nsp186V86VgtTgtA311AY.440.000018
ORF1ab/nsp186V86VgtTgtG111AY.440.000006
ORF1ab/nsp186V86VgtTgtC711B.10.000064
ORF1ab/nsp186V86VgtTgtA211B.10.000018
ORF1ab/nsp186V86VgtTgtG211B.10.000018
ORF1ab/nsp186V86VgtTgtA1111C.160.011665
ORF1ab/nsp186V86VgtTgtC47B.1.20.000035
ORF1ab/nsp186V86VgtTgtG27B.1.20.000018
ORF1ab/nsp186V86VgtTgtA17B.1.20.000009
ORF1ab/nsp186V86VgtTgtA36AY.1020.00008
ORF1ab/nsp186V86VgtTgtC26AY.1020.000053
ORF1ab/nsp186V86VgtTgtG16AY.1020.000027
ORF1ab/nsp186V86VgtTgtC55AY.340.000485
ORF1ab/nsp186V86VgtTgtC45B.1.10.000073
ORF1ab/nsp186V86VgtTgtA15B.1.10.000018
ORF1ab/nsp186V86VgtTgtG55C.180.012953
ORF1ab/nsp186V86VgtTgtA55P.1.170.000809
ORF1ab/nsp186V86VgtTgtG34AY.330.0002
ORF1ab/nsp186V86VgtTgtC14AY.330.000067
ORF1ab/nsp186V86VgtTgtC44AY.90.00027
ORF1ab/nsp186V86VgtTgtG34B.1.1770.00004
ORF1ab/nsp186V86VgtTgtA14B.1.1770.000013
ORF1ab/nsp186V86VgtTgtG33AY.260.000085
ORF1ab/nsp186V86VgtTgtG33AY.30.00003
ORF1ab/nsp186V86VgtTgtG23AY.750.000112
ORF1ab/nsp186V86VgtTgtA13AY.750.000056
ORF1ab/nsp186V86VgtTgtA23AY.9.20.000073
ORF1ab/nsp186V86VgtTgtG13AY.9.20.000037
ORF1ab/nsp186V86VgtTgtA33B.1.1.5190.000119
ORF1ab/nsp186V86VgtTgtC33B.1.3110.000824
ORF1ab/nsp186V86VgtTgtG12AY.1170.000085
ORF1ab/nsp186V86VgtTgtC12AY.1170.000085
ORF1ab/nsp186V86VgtTgtG12AY.1200.000037
ORF1ab/nsp186V86VgtTgtC12AY.1200.000037
ORF1ab/nsp186V86VgtTgtC12AY.290.000016
ORF1ab/nsp186V86VgtTgtA12AY.290.000016
ORF1ab/nsp186V86VgtTgtG12AY.390.000025
ORF1ab/nsp186V86VgtTgtC12AY.390.000025
ORF1ab/nsp186V86VgtTgtG22AY.420.00008
ORF1ab/nsp186V86VgtTgtG22AY.50.000041
ORF1ab/nsp186V86VgtTgtG22AY.610.00021
ORF1ab/nsp186V86VgtTgtC22AY.780.003082
ORF1ab/nsp186V86VgtTgtG22B.1.1.2980.001724
ORF1ab/nsp186V86VgtTgtC12B.1.1600.000031
ORF1ab/nsp186V86VgtTgtG12B.1.1600.000031
ORF1ab/nsp186V86VgtTgtG22B.1.258.140.001961
ORF1ab/nsp186V86VgtTgtC22B.1.4270.000101
ORF1ab/nsp186V86VgtTgtG12B.1.4290.000024
ORF1ab/nsp186V86VgtTgtC12B.1.4290.000024
ORF1ab/nsp186V86VgtTgtG12B.1.6210.000089
ORF1ab/nsp186V86VgtTgtC12B.1.6210.000089
ORF1ab/nsp186V86VgtTgtC11AY.1060.000335
ORF1ab/nsp186V86VgtTgtG11AY.1090.00074
ORF1ab/nsp186V86VgtTgtG11AY.1110.000183
ORF1ab/nsp186V86VgtTgtC11AY.1190.000035
ORF1ab/nsp186V86VgtTgtG11AY.120.2.10.000498
ORF1ab/nsp186V86VgtTgtC11AY.140.000088
ORF1ab/nsp186V86VgtTgtG11AY.170.008197
ORF1ab/nsp186V86VgtTgtG11AY.190.00114
ORF1ab/nsp186V86VgtTgtG11AY.200.000039
ORF1ab/nsp186V86VgtTgtG11AY.39.10.00004
ORF1ab/nsp186V86VgtTgtG11AY.410.000294
ORF1ab/nsp186V86VgtTgtA11AY.460.000104
ORF1ab/nsp186V86VgtTgtG11AY.46.50.000198
ORF1ab/nsp186V86VgtTgtG11AY.46.60.000072
ORF1ab/nsp186V86VgtTgtG11AY.470.000031
ORF1ab/nsp186V86VgtTgtA11AY.540.000095
ORF1ab/nsp186V86VgtTgtA11AY.660.00107
ORF1ab/nsp186V86VgtTgtA11AY.670.000464
ORF1ab/nsp186V86VgtTgtG11AY.99.20.000092
ORF1ab/nsp186V86VgtTgtA11B.1.1.2160.00089
ORF1ab/nsp186V86VgtTgtG11B.1.1.2670.010101
ORF1ab/nsp186V86VgtTgtC11B.1.1.280.000311
ORF1ab/nsp186V86VgtTgtA11B.1.1.3120.001912
ORF1ab/nsp186V86VgtTgtG11B.1.1.3840.02381
ORF1ab/nsp186V86VgtTgtC11B.1.1.390.00051
ORF1ab/nsp186V86VgtTgtG11B.1.1.500.000679
ORF1ab/nsp186V86VgtTgtC11B.1.177.350.000691
ORF1ab/nsp186V86VgtTgtA11B.1.2100.002132
ORF1ab/nsp186V86VgtTgtC11B.1.3510.00003
ORF1ab/nsp186V86VgtTgtA11B.1.5260.000024
ORF1ab/nsp186V86VgtTgtC11B.1.5960.000087
ORF1ab/nsp186V86VgtTgtG11B.1.5970.00463
ORF1ab/nsp186V86VgtTgtC11B.1.617.10.000129
ORF1ab/nsp186V86VgtTgtG11C.370.000116
ORF1ab/nsp186V86VgtTgtA11C.390.018868
ORF1ab/nsp186V86VgtTgtC11P.10.000016

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.