CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : Mut = V84del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp184V84del1V84del1delGTT-NN18338360.456083515-517
ORF1ab/nsp184V84del1V84del1delGtT-tN18338060.439716515-517
ORF1ab/nsp184V84del1V84del1delGtt-tt18331060.0578287515-517
ORF1ab/nsp184V84del1V84del1delgtTgt-1833340.0185488515-517
ORF1ab/nsp184V84del1V84del1delgTTg-N1833220.0120022515-517
ORF1ab/nsp184V84del1V84del1delGTt-Nt1833210.0114566515-517
ORF1ab/nsp184V84del1V84del1delgTtg-t183380.00436443515-517

Details of the mutation V84del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp184V84del1GTT-NN8361833All0.00016
ORF1ab/nsp184V84del1GtT-tN8061833All0.000154
ORF1ab/nsp184V84del1Gtt-tt1061833All0.00002
ORF1ab/nsp184V84del1gtTgt-341833All0.000007
ORF1ab/nsp184V84del1gTTg-N221833All0.000004
ORF1ab/nsp184V84del1GTt-Nt211833All0.000004
ORF1ab/nsp184V84del1gTtg-t81833All0.000002
ORF1ab/nsp184V84del1GtT-tN158331AY.1030.000981
ORF1ab/nsp184V84del1GTT-NN149331AY.1030.000925
ORF1ab/nsp184V84del1Gtt-tt19331AY.1030.000118
ORF1ab/nsp184V84del1GTt-Nt3331AY.1030.000019
ORF1ab/nsp184V84del1gtTgt-1331AY.1030.000006
ORF1ab/nsp184V84del1gTTg-N1331AY.1030.000006
ORF1ab/nsp184V84del1GTT-NN155316AY.440.000943
ORF1ab/nsp184V84del1GtT-tN144316AY.440.000876
ORF1ab/nsp184V84del1Gtt-tt14316AY.440.000085
ORF1ab/nsp184V84del1GTt-Nt2316AY.440.000012
ORF1ab/nsp184V84del1gTtg-t1316AY.440.000006
ORF1ab/nsp184V84del1GtT-tN115246AY.250.000692
ORF1ab/nsp184V84del1GTT-NN111246AY.250.000668
ORF1ab/nsp184V84del1Gtt-tt13246AY.250.000078
ORF1ab/nsp184V84del1GTt-Nt3246AY.250.000018
ORF1ab/nsp184V84del1gTtg-t2246AY.250.000012
ORF1ab/nsp184V84del1gTTg-N2246AY.250.000012
ORF1ab/nsp184V84del1GTT-NN109243B.1.617.20.00041
ORF1ab/nsp184V84del1GtT-tN105243B.1.617.20.000395
ORF1ab/nsp184V84del1Gtt-tt17243B.1.617.20.000064
ORF1ab/nsp184V84del1gtTgt-6243B.1.617.20.000023
ORF1ab/nsp184V84del1gTTg-N4243B.1.617.20.000015
ORF1ab/nsp184V84del1GTt-Nt2243B.1.617.20.000008
ORF1ab/nsp184V84del1GtT-tN59129AY.30.000587
ORF1ab/nsp184V84del1GTT-NN59129AY.30.000587
ORF1ab/nsp184V84del1Gtt-tt7129AY.30.00007
ORF1ab/nsp184V84del1gtTgt-2129AY.30.00002
ORF1ab/nsp184V84del1gTtg-t1129AY.30.00001
ORF1ab/nsp184V84del1gTTg-N1129AY.30.00001
ORF1ab/nsp184V84del1GTT-NN4079AY.260.001132
ORF1ab/nsp184V84del1GtT-tN3379AY.260.000934
ORF1ab/nsp184V84del1GTt-Nt379AY.260.000085
ORF1ab/nsp184V84del1Gtt-tt279AY.260.000057
ORF1ab/nsp184V84del1gtTgt-179AY.260.000028
ORF1ab/nsp184V84del1GTT-NN2951AY.200.001127
ORF1ab/nsp184V84del1GtT-tN1751AY.200.000661
ORF1ab/nsp184V84del1Gtt-tt351AY.200.000117
ORF1ab/nsp184V84del1GTt-Nt251AY.200.000078
ORF1ab/nsp184V84del1GtT-tN2140AY.470.000653
ORF1ab/nsp184V84del1GTT-NN1840AY.470.00056
ORF1ab/nsp184V84del1Gtt-tt140AY.470.000031
ORF1ab/nsp184V84del1GTT-NN1536AY.40.000023
ORF1ab/nsp184V84del1GtT-tN836AY.40.000012
ORF1ab/nsp184V84del1gTTg-N636AY.40.000009
ORF1ab/nsp184V84del1gtTgt-536AY.40.000008
ORF1ab/nsp184V84del1GTt-Nt136AY.40.000002
ORF1ab/nsp184V84del1Gtt-tt136AY.40.000002
ORF1ab/nsp184V84del1GtT-tN2034AY.750.00112
ORF1ab/nsp184V84del1GTT-NN1034AY.750.00056
ORF1ab/nsp184V84del1Gtt-tt434AY.750.000224
ORF1ab/nsp184V84del1GTT-NN1730B.1.4290.0004
ORF1ab/nsp184V84del1GtT-tN830B.1.4290.000188
ORF1ab/nsp184V84del1Gtt-tt330B.1.4290.000071
ORF1ab/nsp184V84del1gTTg-N230B.1.4290.000047
ORF1ab/nsp184V84del1GtT-tN1326AY.140.001144
ORF1ab/nsp184V84del1GTT-NN1126AY.140.000968
ORF1ab/nsp184V84del1gtTgt-126AY.140.000088
ORF1ab/nsp184V84del1GTt-Nt126AY.140.000088
ORF1ab/nsp184V84del1GtT-tN1325AY.390.000321
ORF1ab/nsp184V84del1GTT-NN825AY.390.000198
ORF1ab/nsp184V84del1Gtt-tt325AY.390.000074
ORF1ab/nsp184V84del1gTTg-N125AY.390.000025
ORF1ab/nsp184V84del1GTT-NN1122B.1.1.70.00001
ORF1ab/nsp184V84del1GtT-tN822B.1.1.70.000007
ORF1ab/nsp184V84del1Gtt-tt122B.1.1.70.000001
ORF1ab/nsp184V84del1gTTg-N122B.1.1.70.000001
ORF1ab/nsp184V84del1gTtg-t122B.1.1.70.000001
ORF1ab/nsp184V84del1GtT-tN816AY.1180.000501
ORF1ab/nsp184V84del1GTT-NN516AY.1180.000313
ORF1ab/nsp184V84del1Gtt-tt216AY.1180.000125
ORF1ab/nsp184V84del1gTtg-t116AY.1180.000063
ORF1ab/nsp184V84del1GTT-NN916B.1.4270.000454
ORF1ab/nsp184V84del1GtT-tN616B.1.4270.000303
ORF1ab/nsp184V84del1Gtt-tt116B.1.4270.00005
ORF1ab/nsp184V84del1GTT-NN714AY.116.10.00218
ORF1ab/nsp184V84del1GtT-tN614AY.116.10.001869
ORF1ab/nsp184V84del1GTt-Nt114AY.116.10.000311
ORF1ab/nsp184V84del1GTT-NN714AY.130.001127
ORF1ab/nsp184V84del1GtT-tN514AY.130.000805
ORF1ab/nsp184V84del1gtTgt-114AY.130.000161
ORF1ab/nsp184V84del1GTt-Nt114AY.130.000161
ORF1ab/nsp184V84del1GTT-NN813AY.3.10.000682
ORF1ab/nsp184V84del1Gtt-tt313AY.3.10.000256
ORF1ab/nsp184V84del1GtT-tN213AY.3.10.000171
ORF1ab/nsp184V84del1GTT-NN811AY.1170.000676
ORF1ab/nsp184V84del1GtT-tN211AY.1170.000169
ORF1ab/nsp184V84del1Gtt-tt111AY.1170.000085
ORF1ab/nsp184V84del1GtT-tN610AY.120.10.001926
ORF1ab/nsp184V84del1Gtt-tt210AY.120.10.000642
ORF1ab/nsp184V84del1GTT-NN210AY.120.10.000642
ORF1ab/nsp184V84del1GTT-NN48B.1.1.5190.000159
ORF1ab/nsp184V84del1GtT-tN48B.1.1.5190.000159
ORF1ab/nsp184V84del1GTT-NN27AY.20.000712
ORF1ab/nsp184V84del1GtT-tN27AY.20.000712
ORF1ab/nsp184V84del1Gtt-tt17AY.20.000356
ORF1ab/nsp184V84del1gTTg-N17AY.20.000356
ORF1ab/nsp184V84del1gtTgt-17AY.20.000356
ORF1ab/nsp184V84del1GtT-tN47AY.46.40.000658
ORF1ab/nsp184V84del1GTT-NN37AY.46.40.000494
ORF1ab/nsp184V84del1GTT-NN57B.1.5260.000118
ORF1ab/nsp184V84del1gtTgt-27B.1.5260.000047
ORF1ab/nsp184V84del1GtT-tN26AY.480.00093
ORF1ab/nsp184V84del1GTT-NN26AY.480.00093
ORF1ab/nsp184V84del1Gtt-tt26AY.480.00093
ORF1ab/nsp184V84del1GTT-NN36AY.670.001393
ORF1ab/nsp184V84del1GtT-tN26AY.670.000929
ORF1ab/nsp184V84del1Gtt-tt16AY.670.000464
ORF1ab/nsp184V84del1GtT-tN25B.10.000018
ORF1ab/nsp184V84del1GTT-NN15B.10.000009
ORF1ab/nsp184V84del1gTtg-t15B.10.000009
ORF1ab/nsp184V84del1GTt-Nt15B.10.000009
ORF1ab/nsp184V84del1GtT-tN35B.1.20.000026
ORF1ab/nsp184V84del1GTT-NN15B.1.20.000009
ORF1ab/nsp184V84del1gtTgt-15B.1.20.000009
ORF1ab/nsp184V84del1GtT-tN34AY.10.001187
ORF1ab/nsp184V84del1Gtt-tt14AY.10.000396
ORF1ab/nsp184V84del1GtT-tN34AY.1140.000693
ORF1ab/nsp184V84del1Gtt-tt14AY.1140.000231
ORF1ab/nsp184V84del1gtTgt-34AY.430.000013
ORF1ab/nsp184V84del1GtT-tN14AY.430.000004
ORF1ab/nsp184V84del1GTT-NN24AY.50.000041
ORF1ab/nsp184V84del1Gtt-tt14AY.50.000021
ORF1ab/nsp184V84del1gTTg-N14AY.50.000021
ORF1ab/nsp184V84del1GTT-NN24AY.640.00119
ORF1ab/nsp184V84del1GtT-tN24AY.640.00119
ORF1ab/nsp184V84del1GtT-tN13AY.350.000233
ORF1ab/nsp184V84del1GTT-NN13AY.350.000233
ORF1ab/nsp184V84del1gtTgt-13AY.350.000233
ORF1ab/nsp184V84del1GtT-tN13AY.360.000148
ORF1ab/nsp184V84del1GTT-NN13AY.360.000148
ORF1ab/nsp184V84del1gTTg-N13AY.360.000148
ORF1ab/nsp184V84del1GtT-tN13AY.90.000068
ORF1ab/nsp184V84del1GTT-NN13AY.90.000068
ORF1ab/nsp184V84del1GTt-Nt13AY.90.000068
ORF1ab/nsp184V84del1GtT-tN23B.1.2430.000139
ORF1ab/nsp184V84del1GTT-NN13B.1.2430.00007
ORF1ab/nsp184V84del1GtT-tN12AY.1000.000046
ORF1ab/nsp184V84del1Gtt-tt12AY.1000.000046
ORF1ab/nsp184V84del1GTT-NN12AY.1020.000027
ORF1ab/nsp184V84del1GtT-tN12AY.1020.000027
ORF1ab/nsp184V84del1GTT-NN22AY.1100.000225
ORF1ab/nsp184V84del1GTT-NN22AY.1190.000071
ORF1ab/nsp184V84del1GTT-NN12AY.39.10.00004
ORF1ab/nsp184V84del1gtTgt-12AY.39.10.00004
ORF1ab/nsp184V84del1GTT-NN12AY.4.20.000022
ORF1ab/nsp184V84del1gTTg-N12AY.4.20.000022
ORF1ab/nsp184V84del1GtT-tN12AY.46.60.000072
ORF1ab/nsp184V84del1gtTgt-12AY.46.60.000072
ORF1ab/nsp184V84del1GtT-tN12AY.690.000187
ORF1ab/nsp184V84del1GTT-NN12AY.690.000187
ORF1ab/nsp184V84del1GTT-NN12AY.740.000116
ORF1ab/nsp184V84del1GtT-tN12AY.740.000116
ORF1ab/nsp184V84del1gtTgt-22B.1.1470.001512
ORF1ab/nsp184V84del1GtT-tN22B.1.5960.000174
ORF1ab/nsp184V84del1gtTgt-12B.1.6210.000089
ORF1ab/nsp184V84del1GtT-tN12B.1.6210.000089
ORF1ab/nsp184V84del1GTT-NN11AY.1070.000466
ORF1ab/nsp184V84del1GTT-NN11AY.1130.000142
ORF1ab/nsp184V84del1GtT-tN11AY.1200.000037
ORF1ab/nsp184V84del1GTT-NN11AY.230.00007
ORF1ab/nsp184V84del1GTT-NN11AY.240.000431
ORF1ab/nsp184V84del1GTT-NN11AY.330.000067
ORF1ab/nsp184V84del1GTT-NN11AY.340.000097
ORF1ab/nsp184V84del1GTT-NN11AY.420.00004
ORF1ab/nsp184V84del1GtT-tN11AY.450.000122
ORF1ab/nsp184V84del1GtT-tN11AY.5.30.000337
ORF1ab/nsp184V84del1GtT-tN11AY.520.000814
ORF1ab/nsp184V84del1GTT-NN11AY.540.000095
ORF1ab/nsp184V84del1GtT-tN11AY.75.10.00018
ORF1ab/nsp184V84del1GTT-NN11AY.80.000606
ORF1ab/nsp184V84del1GTT-NN11AY.980.000079
ORF1ab/nsp184V84del1Gtt-tt11AY.99.20.000092
ORF1ab/nsp184V84del1GtT-tN11B.1.10.000018
ORF1ab/nsp184V84del1gtTgt-11B.1.1.1760.000439
ORF1ab/nsp184V84del1gtTgt-11B.1.1.280.000311
ORF1ab/nsp184V84del1gTtg-t11B.1.1.4400.011765
ORF1ab/nsp184V84del1gtTgt-11B.1.177.830.001481
ORF1ab/nsp184V84del1GtT-tN11B.1.2580.000067
ORF1ab/nsp184V84del1GtT-tN11B.1.621.10.000506
ORF1ab/nsp184V84del1gtTgt-11B.1.6370.000073

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.