CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : Mut = T170T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1170T170TT170TsynacCacT123611040.893204773-775
ORF1ab/nsp1170T170TT170TsynacCacA12361260.101942773-775
ORF1ab/nsp1170T170TT170TsynacCacG123660.00485437773-775

Details of the mutation T170T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1170T170TacCacT11041236All0.000211
ORF1ab/nsp1170T170TacCacA1261236All0.000024
ORF1ab/nsp1170T170TacCacG61236All0.000001
ORF1ab/nsp1170T170TacCacT128167B.1.1.70.000115
ORF1ab/nsp1170T170TacCacA39167B.1.1.70.000035
ORF1ab/nsp1170T170TacCacT133133B.1.3370.743017
ORF1ab/nsp1170T170TacCacT107108AY.1030.000664
ORF1ab/nsp1170T170TacCacA1108AY.1030.000006
ORF1ab/nsp1170T170TacCacT7374AY.40.000114
ORF1ab/nsp1170T170TacCacA174AY.40.000002
ORF1ab/nsp1170T170TacCacT6667B.10.000605
ORF1ab/nsp1170T170TacCacA167B.10.000009
ORF1ab/nsp1170T170TacCacT6066B.1.617.20.000226
ORF1ab/nsp1170T170TacCacA666B.1.617.20.000023
ORF1ab/nsp1170T170TacCacT6164B.1.10.001107
ORF1ab/nsp1170T170TacCacA364B.1.10.000054
ORF1ab/nsp1170T170TacCacT5858C.36.30.032898
ORF1ab/nsp1170T170TacCacA3333AY.750.001849
ORF1ab/nsp1170T170TacCacT3030B.1.3280.9375
ORF1ab/nsp1170T170TacCacT2626B.1.20.000229
ORF1ab/nsp1170T170TacCacT1723B.1.2580.001131
ORF1ab/nsp1170T170TacCacG623B.1.2580.000399
ORF1ab/nsp1170T170TacCacT2323B.1.596.10.214953
ORF1ab/nsp1170T170TacCacT2222AY.440.000134
ORF1ab/nsp1170T170TacCacA1221AY.250.000072
ORF1ab/nsp1170T170TacCacT921AY.250.000054
ORF1ab/nsp1170T170TacCacT1919P.10.000299
ORF1ab/nsp1170T170TacCacT1616AY.30.000159
ORF1ab/nsp1170T170TacCacT1515B.1.1770.000198
ORF1ab/nsp1170T170TacCacT1313AY.60.000535
ORF1ab/nsp1170T170TacCacT1111AY.690.002053
ORF1ab/nsp1170T170TacCacT1010A.270.016556
ORF1ab/nsp1170T170TacCacT1010AY.1190.000353
ORF1ab/nsp1170T170TacCacT99AY.200.00035
ORF1ab/nsp1170T170TacCacT99B.1.1600.000281
ORF1ab/nsp1170T170TacCacA57AY.260.000142
ORF1ab/nsp1170T170TacCacT27AY.260.000057
ORF1ab/nsp1170T170TacCacT57AY.430.000022
ORF1ab/nsp1170T170TacCacA27AY.430.000009
ORF1ab/nsp1170T170TacCacT47AY.470.000124
ORF1ab/nsp1170T170TacCacA37AY.470.000093
ORF1ab/nsp1170T170TacCacA46AY.1020.000106
ORF1ab/nsp1170T170TacCacT26AY.1020.000053
ORF1ab/nsp1170T170TacCacT56AY.390.000124
ORF1ab/nsp1170T170TacCacA16AY.390.000025
ORF1ab/nsp1170T170TacCacT46B.1.3510.000119
ORF1ab/nsp1170T170TacCacA26B.1.3510.000059
ORF1ab/nsp1170T170TacCacT55B.1.1.2140.000277
ORF1ab/nsp1170T170TacCacT55B.1.1.2320.009074
ORF1ab/nsp1170T170TacCacT44AY.1170.000338
ORF1ab/nsp1170T170TacCacT44AY.740.000463
ORF1ab/nsp1170T170TacCacT33A.23.10.002113
ORF1ab/nsp1170T170TacCacA33AY.4.20.000065
ORF1ab/nsp1170T170TacCacT33AY.450.000365
ORF1ab/nsp1170T170TacCacT33AY.460.000312
ORF1ab/nsp1170T170TacCacT33B.1.177.210.000229
ORF1ab/nsp1170T170TacCacT33B.1.4090.002344
ORF1ab/nsp1170T170TacCacT33B.1.5260.000071
ORF1ab/nsp1170T170TacCacT33B.520.030303
ORF1ab/nsp1170T170TacCacT33C.350.002322
ORF1ab/nsp1170T170TacCacT33P.1.170.000485
ORF1ab/nsp1170T170TacCacT22A.2.50.000998
ORF1ab/nsp1170T170TacCacT22AY.1000.000092
ORF1ab/nsp1170T170TacCacT12AY.1100.000113
ORF1ab/nsp1170T170TacCacA12AY.1100.000113
ORF1ab/nsp1170T170TacCacA12AY.1200.000037
ORF1ab/nsp1170T170TacCacT12AY.1200.000037
ORF1ab/nsp1170T170TacCacT22AY.240.000862
ORF1ab/nsp1170T170TacCacT22AY.280.003781
ORF1ab/nsp1170T170TacCacT22AY.290.000032
ORF1ab/nsp1170T170TacCacT22AY.360.000296
ORF1ab/nsp1170T170TacCacT22AZ.20.001642
ORF1ab/nsp1170T170TacCacT22B.1.1.1350.00939
ORF1ab/nsp1170T170TacCacT22B.1.1.2410.004141
ORF1ab/nsp1170T170TacCacT22B.1.1.2840.000215
ORF1ab/nsp1170T170TacCacT22B.1.2210.000142
ORF1ab/nsp1170T170TacCacT22B.1.2430.000139
ORF1ab/nsp1170T170TacCacT22B.1.3360.004878
ORF1ab/nsp1170T170TacCacT22B.1.3610.002577
ORF1ab/nsp1170T170TacCacT22B.1.3960.001411
ORF1ab/nsp1170T170TacCacT22B.1.4280.002041
ORF1ab/nsp1170T170TacCacT22B.1.4290.000047
ORF1ab/nsp1170T170TacCacT22B.1.4590.008163
ORF1ab/nsp1170T170TacCacT22B.1.466.20.000782
ORF1ab/nsp1170T170TacCacT22C.370.000232
ORF1ab/nsp1170T170TacCacT22P.1.70.000639
ORF1ab/nsp1170T170TacCacT22P.20.000373
ORF1ab/nsp1170T170TacCacT22Q.80.00033
ORF1ab/nsp1170T170TacCacT110.055556
ORF1ab/nsp1170T170TacCacA11A0.000387
ORF1ab/nsp1170T170TacCacT11A.10.000282
ORF1ab/nsp1170T170TacCacT11A.2.5.30.010309
ORF1ab/nsp1170T170TacCacT11AY.1060.000335
ORF1ab/nsp1170T170TacCacT11AY.1110.000183
ORF1ab/nsp1170T170TacCacA11AY.1180.000063
ORF1ab/nsp1170T170TacCacT11AY.130.000161
ORF1ab/nsp1170T170TacCacT11AY.160.00038
ORF1ab/nsp1170T170TacCacT11AY.190.00114
ORF1ab/nsp1170T170TacCacT11AY.230.00007
ORF1ab/nsp1170T170TacCacA11AY.270.000065
ORF1ab/nsp1170T170TacCacA11AY.330.000067
ORF1ab/nsp1170T170TacCacT11AY.4.50.000107
ORF1ab/nsp1170T170TacCacT11AY.46.20.000635
ORF1ab/nsp1170T170TacCacT11AY.480.000465
ORF1ab/nsp1170T170TacCacT11AY.5.30.000337
ORF1ab/nsp1170T170TacCacT11AY.520.000814
ORF1ab/nsp1170T170TacCacA11AY.530.000288
ORF1ab/nsp1170T170TacCacT11AY.550.000917
ORF1ab/nsp1170T170TacCacT11AY.560.001605
ORF1ab/nsp1170T170TacCacA11AY.610.000105
ORF1ab/nsp1170T170TacCacT11AY.650.000533
ORF1ab/nsp1170T170TacCacT11AY.75.10.00018
ORF1ab/nsp1170T170TacCacT11AY.810.001992
ORF1ab/nsp1170T170TacCacT11AY.880.000884
ORF1ab/nsp1170T170TacCacT11AY.90.000068
ORF1ab/nsp1170T170TacCacT11AY.9.10.000084
ORF1ab/nsp1170T170TacCacT11AY.9.20.000037
ORF1ab/nsp1170T170TacCacT11AY.910.00073
ORF1ab/nsp1170T170TacCacT11AY.940.000443
ORF1ab/nsp1170T170TacCacT11AY.980.000079
ORF1ab/nsp1170T170TacCacT11AY.99.20.000092
ORF1ab/nsp1170T170TacCacT11B.1.1.1010.01
ORF1ab/nsp1170T170TacCacT11B.1.1.1760.000439
ORF1ab/nsp1170T170TacCacT11B.1.1.2220.000204
ORF1ab/nsp1170T170TacCacT11B.1.1.250.000569
ORF1ab/nsp1170T170TacCacT11B.1.1.280.000311
ORF1ab/nsp1170T170TacCacT11B.1.1.2860.002899
ORF1ab/nsp1170T170TacCacT11B.1.1.390.00051
ORF1ab/nsp1170T170TacCacT11B.1.1.4340.000349
ORF1ab/nsp1170T170TacCacT11B.1.1.500.000679
ORF1ab/nsp1170T170TacCacT11B.1.1.5260.003546
ORF1ab/nsp1170T170TacCacT11B.1.1.700.000341
ORF1ab/nsp1170T170TacCacT11B.1.110.30.000718
ORF1ab/nsp1170T170TacCacT11B.1.1590.012195
ORF1ab/nsp1170T170TacCacT11B.1.177.40.000211
ORF1ab/nsp1170T170TacCacT11B.1.177.60.000977
ORF1ab/nsp1170T170TacCacT11B.1.177.650.000665
ORF1ab/nsp1170T170TacCacT11B.1.177.790.002342
ORF1ab/nsp1170T170TacCacT11B.1.2340.000132
ORF1ab/nsp1170T170TacCacT11B.1.2400.000216
ORF1ab/nsp1170T170TacCacT11B.1.258.160.001637
ORF1ab/nsp1170T170TacCacT11B.1.360.000146
ORF1ab/nsp1170T170TacCacT11B.1.36.290.000517
ORF1ab/nsp1170T170TacCacT11B.1.4270.00005
ORF1ab/nsp1170T170TacCacT11B.1.4560.003268
ORF1ab/nsp1170T170TacCacT11B.1.5240.001406
ORF1ab/nsp1170T170TacCacT11B.1.5640.000426
ORF1ab/nsp1170T170TacCacA11B.1.5770.000687
ORF1ab/nsp1170T170TacCacT11B.1.5950.000261
ORF1ab/nsp1170T170TacCacT11B.1.6000.005848
ORF1ab/nsp1170T170TacCacT11B.1.6100.003546
ORF1ab/nsp1170T170TacCacA11B.1.6180.004032
ORF1ab/nsp1170T170TacCacT11B.1.6210.000089
ORF1ab/nsp1170T170TacCacT11B.1.6370.000073
ORF1ab/nsp1170T170TacCacT11C.230.005814
ORF1ab/nsp1170T170TacCacT11C.360.000911
ORF1ab/nsp1170T170TacCacT11D.20.000075
ORF1ab/nsp1170T170TacCacT11P.1.140.000048
ORF1ab/nsp1170T170TacCacT11P.1.150.000232
ORF1ab/nsp1170T170TacCacT11P.1.20.001156

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.