CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : Mut = T170S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1170T170ST170SnonsynAccTcc950.555556773-775
ORF1ab/nsp1170T170ST170SnonsynaCcaGc920.222222773-775
ORF1ab/nsp1170T170ST170SnonsynAcCTcG910.111111773-775
ORF1ab/nsp1170T170ST170SnonsynaCCaGT910.111111773-775

Details of the mutation T170S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1170T170SAccTcc59All0.000001
ORF1ab/nsp1170T170SaCcaGc29All0
ORF1ab/nsp1170T170SAcCTcG19All0
ORF1ab/nsp1170T170SaCCaGT19All0
ORF1ab/nsp1170T170SaCCaGT120.055556
ORF1ab/nsp1170T170SaCcaGc120.055556
ORF1ab/nsp1170T170SAcCTcG11AY.610.000105
ORF1ab/nsp1170T170SAccTcc11AY.620.000436
ORF1ab/nsp1170T170SAccTcc11B.1.1.500.000679
ORF1ab/nsp1170T170SAccTcc11B.1.1.5190.00004
ORF1ab/nsp1170T170SAccTcc11B.1.1.70.000001
ORF1ab/nsp1170T170SAccTcc11B.1.6280.000352
ORF1ab/nsp1170T170SaCcaGc11P.10.000016