CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : Mut = S3S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13S3SS3SsynagCagT290529051272-274

Details of the mutation S3S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13S3SagCagT29052905All0.000556
ORF1ab/nsp13S3SagCagT887887B.1.2430.061722
ORF1ab/nsp13S3SagCagT532532B.1.1.70.000476
ORF1ab/nsp13S3SagCagT309309B.1.1.40.919643
ORF1ab/nsp13S3SagCagT196196AY.250.001179
ORF1ab/nsp13S3SagCagT6565AY.430.000288
ORF1ab/nsp13S3SagCagT6565P.10.001024
ORF1ab/nsp13S3SagCagT5757B.1.617.20.000215
ORF1ab/nsp13S3SagCagT5656AY.40.000087
ORF1ab/nsp13S3SagCagT5353AY.9.20.001947
ORF1ab/nsp13S3SagCagT4747B.1.20.000414
ORF1ab/nsp13S3SagCagT3838B.10.000348
ORF1ab/nsp13S3SagCagT3434B.1.10.000617
ORF1ab/nsp13S3SagCagT3131B.1.1990.128099
ORF1ab/nsp13S3SagCagT2929AY.98.10.001404
ORF1ab/nsp13S3SagCagT2828AY.330.00187
ORF1ab/nsp13S3SagCagT2626AY.30.000259
ORF1ab/nsp13S3SagCagT2525AY.440.000152
ORF1ab/nsp13S3SagCagT2222B.1.5260.000517
ORF1ab/nsp13S3SagCagT2121B.1.1770.000277
ORF1ab/nsp13S3SagCagT2020B.1.1.470.106952
ORF1ab/nsp13S3SagCagT1818B.1.6210.001593
ORF1ab/nsp13S3SagCagT1818P.1.150.004182
ORF1ab/nsp13S3SagCagT1717B.1.1.2610.146552
ORF1ab/nsp13S3SagCagT1414AY.1030.000087
ORF1ab/nsp13S3SagCagT1414B.1.4290.000329
ORF1ab/nsp13S3SagCagT1212B.1.1.410.075949
ORF1ab/nsp13S3SagCagT1212P.1.100.003234
ORF1ab/nsp13S3SagCagT88AY.340.000776
ORF1ab/nsp13S3SagCagT88B.1.1.630.003086
ORF1ab/nsp13S3SagCagT88B.1.258.160.013093
ORF1ab/nsp13S3SagCagT88B.1.3510.000238
ORF1ab/nsp13S3SagCagT77B.1.1600.000218
ORF1ab/nsp13S3SagCagT77B.1.258.170.000728
ORF1ab/nsp13S3SagCagT66AY.46.60.000433
ORF1ab/nsp13S3SagCagT66C.370.000696
ORF1ab/nsp13S3SagCagT55AY.200.000194
ORF1ab/nsp13S3SagCagT55AY.260.000142
ORF1ab/nsp13S3SagCagT55AY.290.000079
ORF1ab/nsp13S3SagCagT55AY.90.000338
ORF1ab/nsp13S3SagCagT55AY.99.20.000461
ORF1ab/nsp13S3SagCagT55U.30.019305
ORF1ab/nsp13S3SagCagT44AD.20.000876
ORF1ab/nsp13S3SagCagT44AY.10.001583
ORF1ab/nsp13S3SagCagT44AY.1020.000106
ORF1ab/nsp13S3SagCagT44AY.1130.00057
ORF1ab/nsp13S3SagCagT44N.90.02381
ORF1ab/nsp13S3SagCagT33AY.1000.000138
ORF1ab/nsp13S3SagCagT33AY.1180.000188
ORF1ab/nsp13S3SagCagT33AY.1190.000106
ORF1ab/nsp13S3SagCagT33AY.390.000074
ORF1ab/nsp13S3SagCagT33AY.4.20.000065
ORF1ab/nsp13S3SagCagT33AY.470.000093
ORF1ab/nsp13S3SagCagT33AY.50.000062
ORF1ab/nsp13S3SagCagT33AY.980.000237
ORF1ab/nsp13S3SagCagT33B.1.1460.012712
ORF1ab/nsp13S3SagCagT33B.1.221.40.0125
ORF1ab/nsp13S3SagCagT33B.1.2340.000396
ORF1ab/nsp13S3SagCagT33B.1.360.000438
ORF1ab/nsp13S3SagCagT33B.1.3890.003006
ORF1ab/nsp13S3SagCagT33B.1.617.10.000387
ORF1ab/nsp13S3SagCagT33P.20.00056
ORF1ab/nsp13S3SagCagT22AH.30.007605
ORF1ab/nsp13S3SagCagT22AY.1200.000074
ORF1ab/nsp13S3SagCagT22AY.16.10.00094
ORF1ab/nsp13S3SagCagT22AY.3.10.000171
ORF1ab/nsp13S3SagCagT22AY.350.000466
ORF1ab/nsp13S3SagCagT22AY.450.000243
ORF1ab/nsp13S3SagCagT22AY.540.000191
ORF1ab/nsp13S3SagCagT22AY.750.000112
ORF1ab/nsp13S3SagCagT22AY.9.10.000167
ORF1ab/nsp13S3SagCagT22B0.000256
ORF1ab/nsp13S3SagCagT22B.1.1.1700.002494
ORF1ab/nsp13S3SagCagT22B.1.1.2940.002532
ORF1ab/nsp13S3SagCagT22B.1.160.300.005952
ORF1ab/nsp13S3SagCagT22B.1.177.540.001213
ORF1ab/nsp13S3SagCagT22B.1.177.810.000379
ORF1ab/nsp13S3SagCagT22B.1.2400.000431
ORF1ab/nsp13S3SagCagT22B.1.2580.000133
ORF1ab/nsp13S3SagCagT22B.1.3690.00057
ORF1ab/nsp13S3SagCagT22B.1.5750.000607
ORF1ab/nsp13S3SagCagT22B.1.5770.001375
ORF1ab/nsp13S3SagCagT22B.1.5820.000981
ORF1ab/nsp13S3SagCagT22B.1.6370.000146
ORF1ab/nsp13S3SagCagT22P.1.140.000096
ORF1ab/nsp13S3SagCagT22Q.80.00033
ORF1ab/nsp13S3SagCagT11A.210.00277
ORF1ab/nsp13S3SagCagT11AA.60.016129
ORF1ab/nsp13S3SagCagT11AE.80.000489
ORF1ab/nsp13S3SagCagT11AU.20.002421
ORF1ab/nsp13S3SagCagT11AY.100.00053
ORF1ab/nsp13S3SagCagT11AY.1040.001984
ORF1ab/nsp13S3SagCagT11AY.1050.000643
ORF1ab/nsp13S3SagCagT11AY.1060.000335
ORF1ab/nsp13S3SagCagT11AY.1080.001103
ORF1ab/nsp13S3SagCagT11AY.1090.00074
ORF1ab/nsp13S3SagCagT11AY.120.10.000321
ORF1ab/nsp13S3SagCagT11AY.1210.000135
ORF1ab/nsp13S3SagCagT11AY.230.00007
ORF1ab/nsp13S3SagCagT11AY.270.000065
ORF1ab/nsp13S3SagCagT11AY.300.000396
ORF1ab/nsp13S3SagCagT11AY.39.10.00004
ORF1ab/nsp13S3SagCagT11AY.4.2.10.000149
ORF1ab/nsp13S3SagCagT11AY.4.50.000107
ORF1ab/nsp13S3SagCagT11AY.510.000909
ORF1ab/nsp13S3SagCagT11AY.60.000041
ORF1ab/nsp13S3SagCagT11AY.610.000105
ORF1ab/nsp13S3SagCagT11AY.740.000116
ORF1ab/nsp13S3SagCagT11AY.790.001211
ORF1ab/nsp13S3SagCagT11AY.840.000437
ORF1ab/nsp13S3SagCagT11AY.910.00073
ORF1ab/nsp13S3SagCagT11AY.99.10.001553
ORF1ab/nsp13S3SagCagT11B.1.1.1610.003534
ORF1ab/nsp13S3SagCagT11B.1.1.2070.001182
ORF1ab/nsp13S3SagCagT11B.1.1.3700.012658
ORF1ab/nsp13S3SagCagT11B.1.1.3720.000689
ORF1ab/nsp13S3SagCagT11B.1.1.4320.001266
ORF1ab/nsp13S3SagCagT11B.1.1.4340.000349
ORF1ab/nsp13S3SagCagT11B.1.1.440.00241
ORF1ab/nsp13S3SagCagT11B.1.1.5260.003546
ORF1ab/nsp13S3SagCagT11B.1.1.700.000341
ORF1ab/nsp13S3SagCagT11B.1.1110.001175
ORF1ab/nsp13S3SagCagT11B.1.160.100.008065
ORF1ab/nsp13S3SagCagT11B.1.177.400.005155
ORF1ab/nsp13S3SagCagT11B.1.177.420.000894
ORF1ab/nsp13S3SagCagT11B.1.177.70.000165
ORF1ab/nsp13S3SagCagT11B.1.2390.001221
ORF1ab/nsp13S3SagCagT11B.1.264.10.047619
ORF1ab/nsp13S3SagCagT11B.1.3290.000608
ORF1ab/nsp13S3SagCagT11B.1.3490.000715
ORF1ab/nsp13S3SagCagT11B.1.36.100.004785
ORF1ab/nsp13S3SagCagT11B.1.36.170.000494
ORF1ab/nsp13S3SagCagT11B.1.3970.004854
ORF1ab/nsp13S3SagCagT11B.1.4270.00005
ORF1ab/nsp13S3SagCagT11B.1.5250.000113
ORF1ab/nsp13S3SagCagT11B.1.5610.000397
ORF1ab/nsp13S3SagCagT11B.1.5950.000261
ORF1ab/nsp13S3SagCagT11B.1.5960.000087
ORF1ab/nsp13S3SagCagT11B.30.000831
ORF1ab/nsp13S3SagCagT11C.300.001727
ORF1ab/nsp13S3SagCagT11D.20.000075
ORF1ab/nsp13S3SagCagT11P.1.10.000318
ORF1ab/nsp13S3SagCagT11Q.10.000126
ORF1ab/nsp13S3SagCagT11Z.10.00289