CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : Mut = S100C

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1100S100CS100CnonsynAgtTgt131713160.999241563-565
ORF1ab/nsp1100S100CS100CnonsynAgTTgC131710.000759301563-565

Details of the mutation S100C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1100S100CAgtTgt13161317All0.000252
ORF1ab/nsp1100S100CAgTTgC11317All0
ORF1ab/nsp1100S100CAgtTgt884884AY.4.30.744108
ORF1ab/nsp1100S100CAgtTgt247247AY.40.000384
ORF1ab/nsp1100S100CAgtTgt1414AY.440.000085
ORF1ab/nsp1100S100CAgtTgt1414B.10.000128
ORF1ab/nsp1100S100CAgtTgt1313AY.4.50.001397
ORF1ab/nsp1100S100CAgtTgt1313B.1.617.20.000049
ORF1ab/nsp1100S100CAgtTgt1212B.1.1.70.000011
ORF1ab/nsp1100S100CAgtTgt1010AY.420.000402
ORF1ab/nsp1100S100CAgtTgt99AY.370.002845
ORF1ab/nsp1100S100CAgtTgt77AY.450.000852
ORF1ab/nsp1100S100CAgtTgt77B.1.20.000062
ORF1ab/nsp1100S100CAgtTgt55AY.430.000022
ORF1ab/nsp1100S100CAgtTgt55B.1.177.870.003639
ORF1ab/nsp1100S100CAgtTgt55C.370.00058
ORF1ab/nsp1100S100CAgtTgt44AY.390.000099
ORF1ab/nsp1100S100CAgtTgt33AY.1000.000138
ORF1ab/nsp1100S100CAgtTgt33AY.30.00003
ORF1ab/nsp1100S100CAgtTgt33AY.46.60.000217
ORF1ab/nsp1100S100CAgtTgt33AY.80.001818
ORF1ab/nsp1100S100CAgtTgt33AY.90.000203
ORF1ab/nsp1100S100CAgtTgt33B.1.3510.000089
ORF1ab/nsp1100S100CAgtTgt33P.10.000047
ORF1ab/nsp1100S100CAgtTgt22AY.1020.000053
ORF1ab/nsp1100S100CAgtTgt22AY.1030.000012
ORF1ab/nsp1100S100CAgtTgt22AY.1200.000074
ORF1ab/nsp1100S100CAgtTgt22AY.260.000057
ORF1ab/nsp1100S100CAgtTgt22AY.290.000032
ORF1ab/nsp1100S100CAgtTgt22AY.39.10.000079
ORF1ab/nsp1100S100CAgtTgt22AY.4.20.000043
ORF1ab/nsp1100S100CAgtTgt22B.1.10.000036
ORF1ab/nsp1100S100CAgtTgt22B.1.2400.000431
ORF1ab/nsp1100S100CAgtTgt22B.1.2600.006689
ORF1ab/nsp1100S100CAgtTgt22B.1.4290.000047
ORF1ab/nsp1100S100CAgtTgt110.055556
ORF1ab/nsp1100S100CAgtTgt11AY.1190.000035
ORF1ab/nsp1100S100CAgtTgt11AY.1210.000135
ORF1ab/nsp1100S100CAgtTgt11AY.190.00114
ORF1ab/nsp1100S100CAgtTgt11AY.200.000039
ORF1ab/nsp1100S100CAgTTgC11AY.230.00007
ORF1ab/nsp1100S100CAgtTgt11AY.250.000006
ORF1ab/nsp1100S100CAgtTgt11AY.3.10.000085
ORF1ab/nsp1100S100CAgtTgt11AY.340.000097
ORF1ab/nsp1100S100CAgtTgt11AY.50.000021
ORF1ab/nsp1100S100CAgtTgt11AY.7.20.000559
ORF1ab/nsp1100S100CAgtTgt11AY.870.000833
ORF1ab/nsp1100S100CAgtTgt11AY.980.000079
ORF1ab/nsp1100S100CAgtTgt11AY.99.10.001553
ORF1ab/nsp1100S100CAgtTgt11AY.99.20.000092
ORF1ab/nsp1100S100CAgtTgt11B.1.1.2730.006757
ORF1ab/nsp1100S100CAgtTgt11B.1.177.150.000631
ORF1ab/nsp1100S100CAgtTgt11B.1.177.40.000211
ORF1ab/nsp1100S100CAgtTgt11B.1.258.170.000104
ORF1ab/nsp1100S100CAgtTgt11B.1.3490.000715
ORF1ab/nsp1100S100CAgtTgt11B.1.36.290.000517
ORF1ab/nsp1100S100CAgtTgt11B.1.3990.001934
ORF1ab/nsp1100S100CAgtTgt11B.1.5260.000024
ORF1ab/nsp1100S100CAgtTgt11B.1.5990.00365
ORF1ab/nsp1100S100CAgtTgt11G.10.041667