CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : Mut = R73C

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp173R73CR73CnonsynCgtTgt6456440.99845482-484
ORF1ab/nsp173R73CR73CnonsynCgTTgC64510.00155039482-484

Details of the mutation R73C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp173R73CCgtTgt644645All0.000123
ORF1ab/nsp173R73CCgTTgC1645All0
ORF1ab/nsp173R73CCgtTgt126126B.1.1.70.000113
ORF1ab/nsp173R73CCgtTgt107107AY.40.000167
ORF1ab/nsp173R73CCgtTgt4242B.1.258.231
ORF1ab/nsp173R73CCgtTgt4040D.20.003002
ORF1ab/nsp173R73CCgtTgt3232B.1.1390.02346
ORF1ab/nsp173R73CCgtTgt2222B.1.617.20.000083
ORF1ab/nsp173R73CCgtTgt1616AY.440.000097
ORF1ab/nsp173R73CCgtTgt1515AY.1200.000558
ORF1ab/nsp173R73CCgtTgt1414AY.250.000084
ORF1ab/nsp173R73CCgtTgt1414B.1.2400.003018
ORF1ab/nsp173R73CCgtTgt1010B.1.4090.007812
ORF1ab/nsp173R73CCgtTgt99AY.1030.000056
ORF1ab/nsp173R73CCgtTgt99AY.430.00004
ORF1ab/nsp173R73CCgtTgt88P.1.150.001859
ORF1ab/nsp173R73CCgtTgt77AY.200.000272
ORF1ab/nsp173R73CCgtTgt66AY.1180.000376
ORF1ab/nsp173R73CCgtTgt56B.1.10.000091
ORF1ab/nsp173R73CCgTTgC16B.1.10.000018
ORF1ab/nsp173R73CCgtTgt66B.1.20.000053
ORF1ab/nsp173R73CCgtTgt55AY.130.000805
ORF1ab/nsp173R73CCgtTgt55AY.30.00005
ORF1ab/nsp173R73CCgtTgt55AY.4.20.000108
ORF1ab/nsp173R73CCgtTgt55AY.610.000524
ORF1ab/nsp173R73CCgtTgt55C.36.30.002836
ORF1ab/nsp173R73CCgtTgt55P.10.000079
ORF1ab/nsp173R73CCgtTgt44AY.260.000113
ORF1ab/nsp173R73CCgtTgt44AY.390.000099
ORF1ab/nsp173R73CCgtTgt44AY.50.000083
ORF1ab/nsp173R73CCgtTgt44B.10.000037
ORF1ab/nsp173R73CCgtTgt44B.1.2580.000266
ORF1ab/nsp173R73CCgtTgt33AY.1000.000138
ORF1ab/nsp173R73CCgtTgt33AY.230.000209
ORF1ab/nsp173R73CCgtTgt33AY.330.0002
ORF1ab/nsp173R73CCgtTgt33B.1.1770.00004
ORF1ab/nsp173R73CCgtTgt33B.1.3510.000089
ORF1ab/nsp173R73CCgtTgt33P.1.140.000143
ORF1ab/nsp173R73CCgtTgt22A0.000774
ORF1ab/nsp173R73CCgtTgt22AY.1090.001479
ORF1ab/nsp173R73CCgtTgt22AY.4.50.000215
ORF1ab/nsp173R73CCgtTgt22AY.510.001818
ORF1ab/nsp173R73CCgtTgt22AY.9.10.000167
ORF1ab/nsp173R73CCgtTgt22B.1.1.4340.000697
ORF1ab/nsp173R73CCgtTgt22B.1.177.470.025974
ORF1ab/nsp173R73CCgtTgt22B.1.3770.009132
ORF1ab/nsp173R73CCgtTgt22B.1.4270.000101
ORF1ab/nsp173R73CCgtTgt22B.1.4290.000047
ORF1ab/nsp173R73CCgtTgt22B.1.5250.000226
ORF1ab/nsp173R73CCgtTgt22B.1.5260.000047
ORF1ab/nsp173R73CCgtTgt22B.1.6210.000177
ORF1ab/nsp173R73CCgtTgt22C.180.005181
ORF1ab/nsp173R73CCgtTgt22C.370.000232
ORF1ab/nsp173R73CCgtTgt11A.2.50.000499
ORF1ab/nsp173R73CCgtTgt11AD.20.000219
ORF1ab/nsp173R73CCgtTgt11AY.1020.000027
ORF1ab/nsp173R73CCgtTgt11AY.1100.000113
ORF1ab/nsp173R73CCgtTgt11AY.1130.000142
ORF1ab/nsp173R73CCgtTgt11AY.1170.000085
ORF1ab/nsp173R73CCgtTgt11AY.1190.000035
ORF1ab/nsp173R73CCgtTgt11AY.240.000431
ORF1ab/nsp173R73CCgtTgt11AY.290.000016
ORF1ab/nsp173R73CCgtTgt11AY.300.000396
ORF1ab/nsp173R73CCgtTgt11AY.4.30.000842
ORF1ab/nsp173R73CCgtTgt11AY.410.000294
ORF1ab/nsp173R73CCgtTgt11AY.460.000104
ORF1ab/nsp173R73CCgtTgt11AY.46.40.000165
ORF1ab/nsp173R73CCgtTgt11AY.46.60.000072
ORF1ab/nsp173R73CCgtTgt11AY.470.000031
ORF1ab/nsp173R73CCgtTgt11AY.60.000041
ORF1ab/nsp173R73CCgtTgt11AY.600.000938
ORF1ab/nsp173R73CCgtTgt11AY.750.000056
ORF1ab/nsp173R73CCgtTgt11AY.75.10.00018
ORF1ab/nsp173R73CCgtTgt11AY.800.001129
ORF1ab/nsp173R73CCgtTgt11AY.90.000068
ORF1ab/nsp173R73CCgtTgt11AY.940.000443
ORF1ab/nsp173R73CCgtTgt11AY.98.10.000048
ORF1ab/nsp173R73CCgtTgt11AY.990.001049
ORF1ab/nsp173R73CCgtTgt11B0.000128
ORF1ab/nsp173R73CCgtTgt11B.1.1.10.000327
ORF1ab/nsp173R73CCgtTgt11B.1.1.1760.000439
ORF1ab/nsp173R73CCgtTgt11B.1.1.2160.00089
ORF1ab/nsp173R73CCgtTgt11B.1.1.250.000569
ORF1ab/nsp173R73CCgtTgt11B.1.1.280.000311
ORF1ab/nsp173R73CCgtTgt11B.1.1.3060.000438
ORF1ab/nsp173R73CCgtTgt11B.1.1.3430.020833
ORF1ab/nsp173R73CCgtTgt11B.1.1.3970.002252
ORF1ab/nsp173R73CCgtTgt11B.1.1.4200.001006
ORF1ab/nsp173R73CCgtTgt11B.1.1.610.008772
ORF1ab/nsp173R73CCgtTgt11B.1.160.220.006757
ORF1ab/nsp173R73CCgtTgt11B.1.177.210.000076
ORF1ab/nsp173R73CCgtTgt11B.1.1890.004292
ORF1ab/nsp173R73CCgtTgt11B.1.2210.000071
ORF1ab/nsp173R73CCgtTgt11B.1.2340.000132
ORF1ab/nsp173R73CCgtTgt11B.1.2430.00007
ORF1ab/nsp173R73CCgtTgt11B.1.258.170.000104
ORF1ab/nsp173R73CCgtTgt11B.1.258.30.001675
ORF1ab/nsp173R73CCgtTgt11B.1.258.70.001912
ORF1ab/nsp173R73CCgtTgt11B.1.3690.000285
ORF1ab/nsp173R73CCgtTgt11B.1.3810.007812
ORF1ab/nsp173R73CCgtTgt11B.1.3960.000706
ORF1ab/nsp173R73CCgtTgt11B.1.438.10.000107
ORF1ab/nsp173R73CCgtTgt11B.1.5300.007143
ORF1ab/nsp173R73CCgtTgt11B.1.5600.00463
ORF1ab/nsp173R73CCgtTgt11B.1.5750.000303
ORF1ab/nsp173R73CCgtTgt11B.1.6050.005952
ORF1ab/nsp173R73CCgtTgt11B.350.007812
ORF1ab/nsp173R73CCgtTgt11B.400.000364
ORF1ab/nsp173R73CCgtTgt11C.36.3.10.002717
ORF1ab/nsp173R73CCgtTgt11P.1.60.001946
ORF1ab/nsp173R73CCgtTgt11P.1.70.000319