CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 73 | R73C | R73C | nonsyn | Cgt | Tgt | 645 | 644 | 0.99845 | 482-484 |
ORF1ab/nsp1 | 73 | R73C | R73C | nonsyn | CgT | TgC | 645 | 1 | 0.00155039 | 482-484 |
Details of the mutation R73C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 644 | 645 | All | 0.000123 |
ORF1ab/nsp1 | 73 | R73C | CgT | TgC | 1 | 645 | All | 0 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 126 | 126 | B.1.1.7 | 0.000113 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 107 | 107 | AY.4 | 0.000167 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 42 | 42 | B.1.258.23 | 1 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 40 | 40 | D.2 | 0.003002 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 32 | 32 | B.1.139 | 0.02346 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 22 | 22 | B.1.617.2 | 0.000083 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 16 | 16 | AY.44 | 0.000097 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 15 | 15 | AY.120 | 0.000558 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 14 | 14 | AY.25 | 0.000084 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 14 | 14 | B.1.240 | 0.003018 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 10 | 10 | B.1.409 | 0.007812 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 8 | 8 | P.1.15 | 0.001859 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 7 | 7 | AY.20 | 0.000272 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 5 | 6 | B.1.1 | 0.000091 |
ORF1ab/nsp1 | 73 | R73C | CgT | TgC | 1 | 6 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 5 | 5 | AY.13 | 0.000805 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 5 | 5 | C.36.3 | 0.002836 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 2 | 2 | A | 0.000774 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 2 | 2 | B.1.177.47 | 0.025974 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 2 | 2 | B.1.377 | 0.009132 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 2 | 2 | C.18 | 0.005181 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.1.343 | 0.020833 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.160.22 | 0.006757 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.35 | 0.007812 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp1 | 73 | R73C | Cgt | Tgt | 1 | 1 | P.1.7 | 0.000319 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|