CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : Mut = R24S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp124R24SR24SnonsynCgcAgc90860.955556335-337
ORF1ab/nsp124R24SR24SnonsynCGcTCc9020.0222222335-337
ORF1ab/nsp124R24SR24SnonsynCGCTCG9020.0222222335-337

Details of the mutation R24S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp124R24SCgcAgc8690All0.000016
ORF1ab/nsp124R24SCGcTCc290All0
ORF1ab/nsp124R24SCGCTCG290All0
ORF1ab/nsp124R24SCgcAgc1616B.1.1.500.010862
ORF1ab/nsp124R24SCgcAgc1313AY.39.10.000515
ORF1ab/nsp124R24SCgcAgc1111AY.40.000017
ORF1ab/nsp124R24SCgcAgc77B.10.000064
ORF1ab/nsp124R24SCgcAgc66B.1.1.2220.001224
ORF1ab/nsp124R24SCGcTCc240.111111
ORF1ab/nsp124R24SCGCTCG240.111111
ORF1ab/nsp124R24SCgcAgc44AY.430.000018
ORF1ab/nsp124R24SCgcAgc33B.1.3510.000089
ORF1ab/nsp124R24SCgcAgc22AY.420.00008
ORF1ab/nsp124R24SCgcAgc22AY.440.000012
ORF1ab/nsp124R24SCgcAgc22AY.910.001461
ORF1ab/nsp124R24SCgcAgc11A0.000387
ORF1ab/nsp124R24SCgcAgc11AY.1000.000046
ORF1ab/nsp124R24SCgcAgc11AY.1030.000006
ORF1ab/nsp124R24SCgcAgc11AY.116.10.000311
ORF1ab/nsp124R24SCgcAgc11AY.230.00007
ORF1ab/nsp124R24SCgcAgc11AY.260.000028
ORF1ab/nsp124R24SCgcAgc11AY.270.000065
ORF1ab/nsp124R24SCgcAgc11AY.330.000067
ORF1ab/nsp124R24SCgcAgc11AY.390.000025
ORF1ab/nsp124R24SCgcAgc11AY.520.000814
ORF1ab/nsp124R24SCgcAgc11B0.000128
ORF1ab/nsp124R24SCgcAgc11B.1.10.000018
ORF1ab/nsp124R24SCgcAgc11B.1.1.70.000001
ORF1ab/nsp124R24SCgcAgc11B.1.177.50.001242
ORF1ab/nsp124R24SCgcAgc11B.1.2580.000067
ORF1ab/nsp124R24SCgcAgc11B.1.3010.005917
ORF1ab/nsp124R24SCgcAgc11B.1.5150.014493
ORF1ab/nsp124R24SCgcAgc11B.1.617.20.000004
ORF1ab/nsp124R24SCgcAgc11B.1.6230.000536
ORF1ab/nsp124R24SCgcAgc11B.6.60.000889

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.