CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : Mut = R119R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1119R119RR119RsyncgCcgT203820050.983808620-622
ORF1ab/nsp1119R119RR119RsyncgCcgA2038240.0117763620-622
ORF1ab/nsp1119R119RR119RsyncgCcgG203890.00441609620-622

Details of the mutation R119R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1119R119RcgCcgT20052038All0.000383
ORF1ab/nsp1119R119RcgCcgA242038All0.000005
ORF1ab/nsp1119R119RcgCcgG92038All0.000002
ORF1ab/nsp1119R119RcgCcgT791795B.1.1.70.000708
ORF1ab/nsp1119R119RcgCcgA4795B.1.1.70.000004
ORF1ab/nsp1119R119RcgCcgT253253B.1.1490.866438
ORF1ab/nsp1119R119RcgCcgT112112AY.340.01086
ORF1ab/nsp1119R119RcgCcgT107107AY.430.000474
ORF1ab/nsp1119R119RcgCcgT7475AY.40.000115
ORF1ab/nsp1119R119RcgCcgA175AY.40.000002
ORF1ab/nsp1119R119RcgCcgT6060AY.750.003361
ORF1ab/nsp1119R119RcgCcgT5252AY.1210.007037
ORF1ab/nsp1119R119RcgCcgT4950B.1.617.20.000185
ORF1ab/nsp1119R119RcgCcgG150B.1.617.20.000004
ORF1ab/nsp1119R119RcgCcgT4647AY.250.000277
ORF1ab/nsp1119R119RcgCcgG147AY.250.000006
ORF1ab/nsp1119R119RcgCcgT4546AY.1190.001589
ORF1ab/nsp1119R119RcgCcgG146AY.1190.000035
ORF1ab/nsp1119R119RcgCcgT3232AY.330.002137
ORF1ab/nsp1119R119RcgCcgT2930AY.98.10.001404
ORF1ab/nsp1119R119RcgCcgG130AY.98.10.000048
ORF1ab/nsp1119R119RcgCcgT2727C.360.02459
ORF1ab/nsp1119R119RcgCcgT1626AY.30.000159
ORF1ab/nsp1119R119RcgCcgA1026AY.30.000099
ORF1ab/nsp1119R119RcgCcgT2323B.10.000211
ORF1ab/nsp1119R119RcgCcgT2323Q.80.003793
ORF1ab/nsp1119R119RcgCcgT2121B.1.1770.000277
ORF1ab/nsp1119R119RcgCcgT1919P.1.140.000908
ORF1ab/nsp1119R119RcgCcgT1818P.10.000284
ORF1ab/nsp1119R119RcgCcgT1616B.1.20.000141
ORF1ab/nsp1119R119RcgCcgT1414AY.290.000221
ORF1ab/nsp1119R119RcgCcgT1013AY.1030.000062
ORF1ab/nsp1119R119RcgCcgG213AY.1030.000012
ORF1ab/nsp1119R119RcgCcgA113AY.1030.000006
ORF1ab/nsp1119R119RcgCcgT1010B.1.1.5190.000397
ORF1ab/nsp1119R119RcgCcgT1010B.1.2340.001319
ORF1ab/nsp1119R119RcgCcgT99B.1.10.000163
ORF1ab/nsp1119R119RcgCcgT88AY.1170.000676
ORF1ab/nsp1119R119RcgCcgT66B.1.3510.000178
ORF1ab/nsp1119R119RcgCcgT55AY.1020.000133
ORF1ab/nsp1119R119RcgCcgT34AY.1200.000112
ORF1ab/nsp1119R119RcgCcgG14AY.1200.000037
ORF1ab/nsp1119R119RcgCcgT44AY.260.000113
ORF1ab/nsp1119R119RcgCcgT24AY.440.000012
ORF1ab/nsp1119R119RcgCcgG14AY.440.000006
ORF1ab/nsp1119R119RcgCcgA14AY.440.000006
ORF1ab/nsp1119R119RcgCcgT44AY.80.002424
ORF1ab/nsp1119R119RcgCcgT44B.1.5260.000094
ORF1ab/nsp1119R119RcgCcgT44Q.10.000505
ORF1ab/nsp1119R119RcgCcgT33AY.200.000117
ORF1ab/nsp1119R119RcgCcgT33AY.210.005693
ORF1ab/nsp1119R119RcgCcgT23AY.4.20.000043
ORF1ab/nsp1119R119RcgCcgA13AY.4.20.000022
ORF1ab/nsp1119R119RcgCcgT23AY.470.000062
ORF1ab/nsp1119R119RcgCcgA13AY.470.000031
ORF1ab/nsp1119R119RcgCcgT33B.1.2410.002435
ORF1ab/nsp1119R119RcgCcgT33D.20.000225
ORF1ab/nsp1119R119RcgCcgT33P.1.150.000697
ORF1ab/nsp1119R119RcgCcgT220.111111
ORF1ab/nsp1119R119RcgCcgT22AY.1000.000092
ORF1ab/nsp1119R119RcgCcgT22AY.1130.000285
ORF1ab/nsp1119R119RcgCcgT22AY.140.000176
ORF1ab/nsp1119R119RcgCcgT22AY.420.00008
ORF1ab/nsp1119R119RcgCcgT22B.1.1.1350.00939
ORF1ab/nsp1119R119RcgCcgT22B.1.1.2280.006098
ORF1ab/nsp1119R119RcgCcgT22B.1.1.330.000842
ORF1ab/nsp1119R119RcgCcgT22B.1.160.250.022222
ORF1ab/nsp1119R119RcgCcgT22B.1.177.210.000153
ORF1ab/nsp1119R119RcgCcgT22B.1.177.810.000379
ORF1ab/nsp1119R119RcgCcgT22B.1.2370.00995
ORF1ab/nsp1119R119RcgCcgT22B.1.2400.000431
ORF1ab/nsp1119R119RcgCcgT22B.1.390.007812
ORF1ab/nsp1119R119RcgCcgT22B.1.6370.000146
ORF1ab/nsp1119R119RcgCcgT22C.370.000232
ORF1ab/nsp1119R119RcgCcgT11AY.1160.000287
ORF1ab/nsp1119R119RcgCcgT11AY.1180.000063
ORF1ab/nsp1119R119RcgCcgA11AY.160.00038
ORF1ab/nsp1119R119RcgCcgT11AY.230.00007
ORF1ab/nsp1119R119RcgCcgT11AY.4.50.000107
ORF1ab/nsp1119R119RcgCcgT11AY.460.000104
ORF1ab/nsp1119R119RcgCcgT11AY.46.40.000165
ORF1ab/nsp1119R119RcgCcgT11AY.5.30.000337
ORF1ab/nsp1119R119RcgCcgT11AY.5.40.000277
ORF1ab/nsp1119R119RcgCcgT11AY.550.000917
ORF1ab/nsp1119R119RcgCcgT11AY.60.000041
ORF1ab/nsp1119R119RcgCcgT11AY.610.000105
ORF1ab/nsp1119R119RcgCcgT11AY.620.000436
ORF1ab/nsp1119R119RcgCcgT11AY.650.000533
ORF1ab/nsp1119R119RcgCcgT11AY.680.000274
ORF1ab/nsp1119R119RcgCcgA11AY.740.000116
ORF1ab/nsp1119R119RcgCcgT11AY.9.20.000037
ORF1ab/nsp1119R119RcgCcgT11AY.910.00073
ORF1ab/nsp1119R119RcgCcgT11AY.920.000287
ORF1ab/nsp1119R119RcgCcgT11AY.960.002075
ORF1ab/nsp1119R119RcgCcgT11AY.980.000079
ORF1ab/nsp1119R119RcgCcgT11AZ.2.10.00813
ORF1ab/nsp1119R119RcgCcgT11B0.000128
ORF1ab/nsp1119R119RcgCcgT11B.1.1.1720.018182
ORF1ab/nsp1119R119RcgCcgT11B.1.1.2840.000107
ORF1ab/nsp1119R119RcgCcgT11B.1.1.370.000193
ORF1ab/nsp1119R119RcgCcgT11B.1.1.4850.016667
ORF1ab/nsp1119R119RcgCcgT11B.1.1.5070.008696
ORF1ab/nsp1119R119RcgCcgA11B.1.1600.000031
ORF1ab/nsp1119R119RcgCcgT11B.1.160.160.000929
ORF1ab/nsp1119R119RcgCcgT11B.1.1700.00431
ORF1ab/nsp1119R119RcgCcgT11B.1.177.480.003125
ORF1ab/nsp1119R119RcgCcgT11B.1.177.70.000165
ORF1ab/nsp1119R119RcgCcgT11B.1.2100.002132
ORF1ab/nsp1119R119RcgCcgT11B.1.2210.000071
ORF1ab/nsp1119R119RcgCcgA11B.1.2430.00007
ORF1ab/nsp1119R119RcgCcgG11B.1.2580.000067
ORF1ab/nsp1119R119RcgCcgA11B.1.360.000146
ORF1ab/nsp1119R119RcgCcgT11B.1.4290.000024
ORF1ab/nsp1119R119RcgCcgT11B.1.438.10.000107
ORF1ab/nsp1119R119RcgCcgT11B.1.466.20.000391
ORF1ab/nsp1119R119RcgCcgT11B.1.4680.005714
ORF1ab/nsp1119R119RcgCcgT11B.1.4690.00361
ORF1ab/nsp1119R119RcgCcgT11B.1.4870.019608
ORF1ab/nsp1119R119RcgCcgT11B.1.4990.00105
ORF1ab/nsp1119R119RcgCcgT11B.1.5030.002488
ORF1ab/nsp1119R119RcgCcgT11B.1.5440.006024
ORF1ab/nsp1119R119RcgCcgT11B.1.5640.000426
ORF1ab/nsp1119R119RcgCcgT11B.1.5890.007576
ORF1ab/nsp1119R119RcgCcgT11B.1.5960.000087
ORF1ab/nsp1119R119RcgCcgT11B.1.6230.000536
ORF1ab/nsp1119R119RcgCcgT11B.30.000831
ORF1ab/nsp1119R119RcgCcgT11P.1.40.000977
ORF1ab/nsp1119R119RcgCcgT11Q.30.000145