CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : Mut = R119C

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1119R119CR119CnonsynCgcTgc107610750.999071620-622
ORF1ab/nsp1119R119CR119CnonsynCgCTgT107610.000929368620-622

Details of the mutation R119C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1119R119CCgcTgc10751076All0.000206
ORF1ab/nsp1119R119CCgCTgT11076All0
ORF1ab/nsp1119R119CCgcTgc385385AY.260.010899
ORF1ab/nsp1119R119CCgcTgc105105AY.1110.019231
ORF1ab/nsp1119R119CCgcTgc8686B.1.617.20.000324
ORF1ab/nsp1119R119CCgcTgc4949B.1.1.2140.002717
ORF1ab/nsp1119R119CCgcTgc4747AY.16.10.022086
ORF1ab/nsp1119R119CCgcTgc4141B.1.1.70.000037
ORF1ab/nsp1119R119CCgcTgc4040AY.40.000062
ORF1ab/nsp1119R119CCgcTgc3838AY.250.000229
ORF1ab/nsp1119R119CCgcTgc3232AY.430.000142
ORF1ab/nsp1119R119CCgcTgc1515B.10.000137
ORF1ab/nsp1119R119CCgcTgc1313B.1.1770.000171
ORF1ab/nsp1119R119CCgcTgc1212AY.440.000073
ORF1ab/nsp1119R119CCgcTgc1111AY.610.001153
ORF1ab/nsp1119R119CCgcTgc1010P.10.000158
ORF1ab/nsp1119R119CCgcTgc99B.1.1.4610.108434
ORF1ab/nsp1119R119CCgcTgc88AY.390.000198
ORF1ab/nsp1119R119CCgcTgc88B.1.3770.03653
ORF1ab/nsp1119R119CCgcTgc88B.1.5800.03252
ORF1ab/nsp1119R119CCgcTgc77AY.1030.000043
ORF1ab/nsp1119R119CCgcTgc77AY.30.00007
ORF1ab/nsp1119R119CCgcTgc77B.1.4290.000165
ORF1ab/nsp1119R119CCgcTgc55AY.1020.000133
ORF1ab/nsp1119R119CCgcTgc55AY.290.000079
ORF1ab/nsp1119R119CCgcTgc55B.1.2320.002687
ORF1ab/nsp1119R119CCgcTgc55B.1.3510.000149
ORF1ab/nsp1119R119CCgcTgc44B.1.10.000073
ORF1ab/nsp1119R119CCgcTgc44B.1.20.000035
ORF1ab/nsp1119R119CCgcTgc44P.1.170.000647
ORF1ab/nsp1119R119CCgcTgc33AY.100.00159
ORF1ab/nsp1119R119CCgcTgc33AY.1130.000427
ORF1ab/nsp1119R119CCgcTgc33AY.1200.000112
ORF1ab/nsp1119R119CCgcTgc33AY.450.000365
ORF1ab/nsp1119R119CCgcTgc33AY.470.000093
ORF1ab/nsp1119R119CCgcTgc33AY.740.000347
ORF1ab/nsp1119R119CCgcTgc33AY.9.20.00011
ORF1ab/nsp1119R119CCgcTgc33B.1.1040.01107
ORF1ab/nsp1119R119CCgcTgc33B.1.5260.000071
ORF1ab/nsp1119R119CCgcTgc22AY.1140.000462
ORF1ab/nsp1119R119CCgcTgc22AY.4.20.000043
ORF1ab/nsp1119R119CCgcTgc22AY.460.000208
ORF1ab/nsp1119R119CCgcTgc22AY.480.00093
ORF1ab/nsp1119R119CCgcTgc22AY.50.000041
ORF1ab/nsp1119R119CCgcTgc22AY.750.000112
ORF1ab/nsp1119R119CCgcTgc22AY.98.10.000097
ORF1ab/nsp1119R119CCgcTgc22B.1.1.2840.000215
ORF1ab/nsp1119R119CCgcTgc22B.1.1.3720.001377
ORF1ab/nsp1119R119CCgcTgc22B.1.1.5190.000079
ORF1ab/nsp1119R119CCgcTgc12B.1.160.160.000929
ORF1ab/nsp1119R119CCgCTgT12B.1.160.160.000929
ORF1ab/nsp1119R119CCgcTgc22B.1.5960.000174
ORF1ab/nsp1119R119CCgcTgc110.055556
ORF1ab/nsp1119R119CCgcTgc11AD.20.000219
ORF1ab/nsp1119R119CCgcTgc11AU.10.001266
ORF1ab/nsp1119R119CCgcTgc11AY.1000.000046
ORF1ab/nsp1119R119CCgcTgc11AY.1170.000085
ORF1ab/nsp1119R119CCgcTgc11AY.1190.000035
ORF1ab/nsp1119R119CCgcTgc11AY.1210.000135
ORF1ab/nsp1119R119CCgcTgc11AY.200.000039
ORF1ab/nsp1119R119CCgcTgc11AY.320.000532
ORF1ab/nsp1119R119CCgcTgc11AY.330.000067
ORF1ab/nsp1119R119CCgcTgc11AY.340.000097
ORF1ab/nsp1119R119CCgcTgc11AY.360.000148
ORF1ab/nsp1119R119CCgcTgc11AY.4.2.10.000149
ORF1ab/nsp1119R119CCgcTgc11AY.420.00004
ORF1ab/nsp1119R119CCgcTgc11AY.46.40.000165
ORF1ab/nsp1119R119CCgcTgc11AY.530.000288
ORF1ab/nsp1119R119CCgcTgc11AY.590.00053
ORF1ab/nsp1119R119CCgcTgc11AY.600.000938
ORF1ab/nsp1119R119CCgcTgc11AY.650.000533
ORF1ab/nsp1119R119CCgcTgc11AY.7.10.000113
ORF1ab/nsp1119R119CCgcTgc11AY.780.001541
ORF1ab/nsp1119R119CCgcTgc11AY.90.000068
ORF1ab/nsp1119R119CCgcTgc11AY.930.000273
ORF1ab/nsp1119R119CCgcTgc11AY.980.000079
ORF1ab/nsp1119R119CCgcTgc11AY.99.20.000092
ORF1ab/nsp1119R119CCgcTgc11B0.000128
ORF1ab/nsp1119R119CCgcTgc11B.1.1.1920.002309
ORF1ab/nsp1119R119CCgcTgc11B.1.1.2220.000204
ORF1ab/nsp1119R119CCgcTgc11B.1.1.2630.001558
ORF1ab/nsp1119R119CCgcTgc11B.1.1.370.000193
ORF1ab/nsp1119R119CCgcTgc11B.1.1.5070.008696
ORF1ab/nsp1119R119CCgcTgc11B.1.1.5230.001563
ORF1ab/nsp1119R119CCgcTgc11B.1.1.700.000341
ORF1ab/nsp1119R119CCgcTgc11B.1.1600.000031
ORF1ab/nsp1119R119CCgcTgc11B.1.160.300.002976
ORF1ab/nsp1119R119CCgcTgc11B.1.177.750.001041
ORF1ab/nsp1119R119CCgcTgc11B.1.177.80.000752
ORF1ab/nsp1119R119CCgcTgc11B.1.2580.000067
ORF1ab/nsp1119R119CCgcTgc11B.1.258.170.000104
ORF1ab/nsp1119R119CCgcTgc11B.1.351.30.000876
ORF1ab/nsp1119R119CCgcTgc11B.1.360.000146
ORF1ab/nsp1119R119CCgcTgc11B.1.36.290.000517
ORF1ab/nsp1119R119CCgcTgc11B.1.3620.001541
ORF1ab/nsp1119R119CCgcTgc11B.1.3660.004878
ORF1ab/nsp1119R119CCgcTgc11B.1.4000.000429
ORF1ab/nsp1119R119CCgcTgc11B.1.4090.000781
ORF1ab/nsp1119R119CCgcTgc11B.1.4160.001269
ORF1ab/nsp1119R119CCgcTgc11B.1.4270.00005
ORF1ab/nsp1119R119CCgcTgc11B.1.438.10.000107
ORF1ab/nsp1119R119CCgcTgc11B.1.4740.001901
ORF1ab/nsp1119R119CCgcTgc11B.1.5250.000113
ORF1ab/nsp1119R119CCgcTgc11B.1.617.10.000129
ORF1ab/nsp1119R119CCgcTgc11B.1.6210.000089
ORF1ab/nsp1119R119CCgcTgc11C.370.000116
ORF1ab/nsp1119R119CCgcTgc11D.20.000075