CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : Mut = N128del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1128N128delN128deldelAAT---48481647-649

Details of the mutation N128del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1128N128delAAT---4848All0.000009
ORF1ab/nsp1128N128delAAT---77B.1.1.70.000006
ORF1ab/nsp1128N128delAAT---44B.1.1.330.001684
ORF1ab/nsp1128N128delAAT---44B.1.1.3480.003185
ORF1ab/nsp1128N128delAAT---22AY.40.000003
ORF1ab/nsp1128N128delAAT---22AY.430.000009
ORF1ab/nsp1128N128delAAT---22AY.46.60.000144
ORF1ab/nsp1128N128delAAT---22B.1.20.000018
ORF1ab/nsp1128N128delAAT---22N.40.008511
ORF1ab/nsp1128N128delAAT---22N.60.014184
ORF1ab/nsp1128N128delAAT---22P.20.000373
ORF1ab/nsp1128N128delAAT---11AY.1160.000287
ORF1ab/nsp1128N128delAAT---11AY.120.000316
ORF1ab/nsp1128N128delAAT---11AY.250.000006
ORF1ab/nsp1128N128delAAT---11AY.380.000499
ORF1ab/nsp1128N128delAAT---11AY.39.10.00004
ORF1ab/nsp1128N128delAAT---11AY.4.50.000107
ORF1ab/nsp1128N128delAAT---11AY.650.000533
ORF1ab/nsp1128N128delAAT---11AY.9.10.000084
ORF1ab/nsp1128N128delAAT---11AY.950.000761
ORF1ab/nsp1128N128delAAT---11B.10.000009
ORF1ab/nsp1128N128delAAT---11B.1.177.40.000211
ORF1ab/nsp1128N128delAAT---11B.1.2110.025
ORF1ab/nsp1128N128delAAT---11B.1.360.000146
ORF1ab/nsp1128N128delAAT---11B.1.4270.00005
ORF1ab/nsp1128N128delAAT---11B.1.4290.000024
ORF1ab/nsp1128N128delAAT---11B.1.617.20.000004
ORF1ab/nsp1128N128delAAT---11B.400.000364
ORF1ab/nsp1128N128delAAT---11C.170.055556
ORF1ab/nsp1128N128delAAT---11C.350.000774

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.