CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : Mut = M85del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp1	85	M85del	M85del	del	ATG	---	34865	34865	1	518-520

Details of the mutation M85del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp1	85	M85del	ATG	---	34865	34865	All	0.006668
ORF1ab/nsp1	85	M85del	ATG	---	8309	8309	AY.4	0.012932
ORF1ab/nsp1	85	M85del	ATG	---	2730	2730	B.1.1.7	0.002444
ORF1ab/nsp1	85	M85del	ATG	---	2600	2600	B.1.617.2	0.00979
ORF1ab/nsp1	85	M85del	ATG	---	1936	1936	AY.43	0.008577
ORF1ab/nsp1	85	M85del	ATG	---	1137	1137	AY.44	0.006921
ORF1ab/nsp1	85	M85del	ATG	---	1066	1066	AY.25	0.006412
ORF1ab/nsp1	85	M85del	ATG	---	957	957	AY.103	0.005942
ORF1ab/nsp1	85	M85del	ATG	---	938	938	B.1.1.298	0.808621
ORF1ab/nsp1	85	M85del	ATG	---	776	776	AY.3	0.007718
ORF1ab/nsp1	85	M85del	ATG	---	723	723	AY.26	0.020468
ORF1ab/nsp1	85	M85del	ATG	---	632	632	B.1.621	0.055944
ORF1ab/nsp1	85	M85del	ATG	---	591	591	AY.120	0.021973
ORF1ab/nsp1	85	M85del	ATG	---	579	579	AY.4.2	0.012558
ORF1ab/nsp1	85	M85del	ATG	---	399	399	AY.80	0.450339
ORF1ab/nsp1	85	M85del	ATG	---	392	392	B.1	0.003591
ORF1ab/nsp1	85	M85del	ATG	---	351	351	AY.39	0.008674
ORF1ab/nsp1	85	M85del	ATG	---	341	341	AY.5	0.007041
ORF1ab/nsp1	85	M85del	ATG	---	332	332	AY.33	0.02217
ORF1ab/nsp1	85	M85del	ATG	---	312	312	AY.75	0.017479
ORF1ab/nsp1	85	M85del	ATG	---	280	280	AY.102	0.007424
ORF1ab/nsp1	85	M85del	ATG	---	261	261	B.1.1	0.004735
ORF1ab/nsp1	85	M85del	ATG	---	251	251	AY.46.6	0.018124
ORF1ab/nsp1	85	M85del	ATG	---	227	227	AY.98	0.017932
ORF1ab/nsp1	85	M85del	ATG	---	215	215	AY.98.1	0.010413
ORF1ab/nsp1	85	M85del	ATG	---	203	203	B.1.2	0.001787
ORF1ab/nsp1	85	M85del	ATG	---	181	181	AY.6	0.007444
ORF1ab/nsp1	85	M85del	ATG	---	179	179	AY.27	0.011585
ORF1ab/nsp1	85	M85del	ATG	---	175	175	AY.9.2	0.006428
ORF1ab/nsp1	85	M85del	ATG	---	169	169	AY.29	0.002666
ORF1ab/nsp1	85	M85del	ATG	---	168	168	AY.39.1	0.006655
ORF1ab/nsp1	85	M85del	ATG	---	168	168	AY.46.5	0.033333
ORF1ab/nsp1	85	M85del	ATG	---	166	166	AY.47	0.005163
ORF1ab/nsp1	85	M85del	ATG	---	152	152	AY.119	0.005367
ORF1ab/nsp1	85	M85del	ATG	---	148	148	AY.42	0.005954
ORF1ab/nsp1	85	M85del	ATG	---	147	147	B.1.177	0.001936
ORF1ab/nsp1	85	M85del	ATG	---	133	133	P.1	0.002095
ORF1ab/nsp1	85	M85del	ATG	---	131	131	B.1.526	0.003079
ORF1ab/nsp1	85	M85del	ATG	---	122	122	AY.34	0.01183
ORF1ab/nsp1	85	M85del	ATG	---	121	121	AY.74	0.013993
ORF1ab/nsp1	85	M85del	ATG	---	119	119	AY.19	0.13569
ORF1ab/nsp1	85	M85del	ATG	---	118	118	B.1.234	0.015569
ORF1ab/nsp1	85	M85del	ATG	---	116	116	AY.20	0.004508
ORF1ab/nsp1	85	M85del	ATG	---	115	115	B.1.351	0.003419
ORF1ab/nsp1	85	M85del	ATG	---	114	114	AY.10	0.060413
ORF1ab/nsp1	85	M85del	ATG	---	114	114	AY.120.1	0.036597
ORF1ab/nsp1	85	M85del	ATG	---	111	111	AY.46	0.011553
ORF1ab/nsp1	85	M85del	ATG	---	110	110	AY.54	0.010488
ORF1ab/nsp1	85	M85del	ATG	---	104	104	B.1.1.519	0.00413
ORF1ab/nsp1	85	M85del	ATG	---	101	101	AY.100	0.004647
ORF1ab/nsp1	85	M85del	ATG	---	93	93	B.1.429	0.002188
ORF1ab/nsp1	85	M85del	ATG	---	92	92	AY.9	0.006219
ORF1ab/nsp1	85	M85del	ATG	---	90	90	AY.117	0.007606
ORF1ab/nsp1	85	M85del	ATG	---	88	88	B	0.011247
ORF1ab/nsp1	85	M85del	ATG	---	86	86	P.1.14	0.004111
ORF1ab/nsp1	85	M85del	ATG	---	85	85	AY.118	0.005325
ORF1ab/nsp1	85	M85del	ATG	---	78	78	AY.14	0.006865
ORF1ab/nsp1	85	M85del	ATG	---	78	78	AY.7.1	0.008791
ORF1ab/nsp1	85	M85del	ATG	---	71	71	AY.4.2.1	0.010578
ORF1ab/nsp1	85	M85del	ATG	---	71	71	AY.9.1	0.005944
ORF1ab/nsp1	85	M85del	ATG	---	71	71	B.1.160	0.002214
ORF1ab/nsp1	85	M85del	ATG	---	70	70	AY.7	0.01372
ORF1ab/nsp1	85	M85del	ATG	---	69	69	AY.3.1	0.005883
ORF1ab/nsp1	85	M85del	ATG	---	69	69	AY.61	0.00723
ORF1ab/nsp1	85	M85del	ATG	---	67	67	AY.99.2	0.006175
ORF1ab/nsp1	85	M85del	ATG	---	61	61	AY.35	0.014216
ORF1ab/nsp1	85	M85del	ATG	---	61	61	AY.4.5	0.006557
ORF1ab/nsp1	85	M85del	ATG	---	61	61	AY.45	0.007423
ORF1ab/nsp1	85	M85del	ATG	---	58	58	B.1.258	0.00386
ORF1ab/nsp1	85	M85del	ATG	---	57	57	AY.23	0.003976
ORF1ab/nsp1	85	M85del	ATG	---	55	55	AY.13	0.008854
ORF1ab/nsp1	85	M85del	ATG	---	54	54	AY.121	0.007307
ORF1ab/nsp1	85	M85del	ATG	---	54	54	AY.65	0.028785
ORF1ab/nsp1	85	M85del	ATG	---	53	53	AY.111	0.009707
ORF1ab/nsp1	85	M85del	ATG	---	52	52	AY.39.1.1	0.037681
ORF1ab/nsp1	85	M85del	ATG	---	52	52	AY.56	0.083467
ORF1ab/nsp1	85	M85del	ATG	---	50	50	AY.71	0.023753
ORF1ab/nsp1	85	M85del	ATG	---	49	49	AY.46.4	0.008061
ORF1ab/nsp1	85	M85del	ATG	---	48	48	B.1.258.17	0.004991
ORF1ab/nsp1	85	M85del	ATG	---	45	45	AY.12	0.014223
ORF1ab/nsp1	85	M85del	ATG	---	44	44	B.1.243	0.003062
ORF1ab/nsp1	85	M85del	ATG	---	42	42	AY.113	0.00598
ORF1ab/nsp1	85	M85del	ATG	---	42	42	AY.62	0.018301
ORF1ab/nsp1	85	M85del	ATG	---	38	38	AY.101	0.018637
ORF1ab/nsp1	85	M85del	ATG	---	38	38	AY.36	0.005632
ORF1ab/nsp1	85	M85del	ATG	---	38	38	B.1.177.21	0.002906
ORF1ab/nsp1	85	M85del	ATG	---	37	37	AY.16	0.014047
ORF1ab/nsp1	85	M85del	ATG	---	36	36	AY.90	0.024641
ORF1ab/nsp1	85	M85del	ATG	---	34	34	AY.110	0.003831
ORF1ab/nsp1	85	M85del	ATG	---	34	34	AY.70	0.007089
ORF1ab/nsp1	85	M85del	ATG	---	34	34	B.1.637	0.002484
ORF1ab/nsp1	85	M85del	ATG	---	33	33	B.1.1.318	0.009958
ORF1ab/nsp1	85	M85del	ATG	---	32	32	AY.46.2	0.02033
ORF1ab/nsp1	85	M85del	ATG	---	32	32	AY.7.2	0.017897
ORF1ab/nsp1	85	M85del	ATG	---	32	32	B.1.427	0.001616
ORF1ab/nsp1	85	M85del	ATG	---	30	30	B.1.497	0.009443
ORF1ab/nsp1	85	M85del	ATG	---	29	29	AY.8	0.017576
ORF1ab/nsp1	85	M85del	ATG	---	28	28	AY.114	0.006471
ORF1ab/nsp1	85	M85del	ATG	---	28	28	AY.4.1	0.020649
ORF1ab/nsp1	85	M85del	ATG	---	28	28	AY.51	0.025455
ORF1ab/nsp1	85	M85del	ATG	---	28	28	AY.60	0.026266
ORF1ab/nsp1	85	M85del	ATG	---	28	28	B.1.525	0.003168
ORF1ab/nsp1	85	M85del	ATG	---	27	27	AY.11	0.036145
ORF1ab/nsp1	85	M85del	ATG	---	27	27	AY.24	0.011638
ORF1ab/nsp1	85	M85del	ATG	---	27	27	AY.37	0.008534
ORF1ab/nsp1	85	M85del	ATG	---	27	27	D.2	0.002026
ORF1ab/nsp1	85	M85del	ATG	---	26	26	AY.93	0.0071
ORF1ab/nsp1	85	M85del	ATG	---	26	26	B.1.1.214	0.001442
ORF1ab/nsp1	85	M85del	ATG	---	26	26	B.1.1.50	0.017651
ORF1ab/nsp1	85	M85del	ATG	---	26	26	Q.1	0.003284
ORF1ab/nsp1	85	M85del	ATG	---	25	25	AY.106	0.008372
ORF1ab/nsp1	85	M85del	ATG	---	25	25	AY.53	0.007188
ORF1ab/nsp1	85	M85del	ATG	---	25	25	AY.75.1	0.004508
ORF1ab/nsp1	85	M85del	ATG	---	24	24	AY.109	0.017751
ORF1ab/nsp1	85	M85del	ATG	---	23	23	AY.16.1	0.010808
ORF1ab/nsp1	85	M85del	ATG	---	23	23	AY.5.3	0.00776
ORF1ab/nsp1	85	M85del	ATG	---	23	23	C.37	0.002669
ORF1ab/nsp1	85	M85del	ATG	---	22	22	AY.5.4	0.006087
ORF1ab/nsp1	85	M85del	ATG	---	22	22	B.1.221	0.001563
ORF1ab/nsp1	85	M85del	ATG	---	20	20	B.1.1.39	0.010194
ORF1ab/nsp1	85	M85del	ATG	---	20	20	B.40	0.007286
ORF1ab/nsp1	85	M85del	ATG	---	20	20	P.1.10	0.005389
ORF1ab/nsp1	85	M85del	ATG	---	19	19	B.1.1.284	0.002041
ORF1ab/nsp1	85	M85del	ATG	---	19	19	B.1.438.1	0.002038
ORF1ab/nsp1	85	M85del	ATG	---	19	19	P.1.1	0.006036
ORF1ab/nsp1	85	M85del	ATG	---	18	18	AY.87	0.014988
ORF1ab/nsp1	85	M85del	ATG	---	18	18	B.1.1.70	0.006139
ORF1ab/nsp1	85	M85del	ATG	---	17	17	AU.1	0.021519
ORF1ab/nsp1	85	M85del	ATG	---	17	17	AY.46.3	0.015873
ORF1ab/nsp1	85	M85del	ATG	---	17	17	AY.94	0.007525
ORF1ab/nsp1	85	M85del	ATG	---	17	17	B.1.1.434	0.005925
ORF1ab/nsp1	85	M85del	ATG	---	16	16	AY.105	0.010289
ORF1ab/nsp1	85	M85del	ATG	---	16	16	AY.38	0.007988
ORF1ab/nsp1	85	M85del	ATG	---	16	16	B.1.596	0.001394
ORF1ab/nsp1	85	M85del	ATG	---	16	16	R.1	0.00144
ORF1ab/nsp1	85	M85del	ATG	---	15	15	AY.120.2.1	0.007474
ORF1ab/nsp1	85	M85del	ATG	---	15	15	B.1.1.311	0.005372
ORF1ab/nsp1	85	M85del	ATG	---	15	15	B.1.1.37	0.002893
ORF1ab/nsp1	85	M85del	ATG	---	15	15	B.1.120	0.115385
ORF1ab/nsp1	85	M85del	ATG	---	15	15	B.1.621.1	0.007587
ORF1ab/nsp1	85	M85del	ATG	---	14	14	AD.2	0.003065
ORF1ab/nsp1	85	M85del	ATG	---	14	14	AY.64	0.008333
ORF1ab/nsp1	85	M85del	ATG	---	14	14	AY.91	0.010226
ORF1ab/nsp1	85	M85del	ATG	---	14	14	AY.92	0.004022
ORF1ab/nsp1	85	M85del	ATG	---	13	13	A.15	0.206349
ORF1ab/nsp1	85	M85del	ATG	---	13	13	AE.8	0.006357
ORF1ab/nsp1	85	M85del	ATG	---	13	13	AY.116	0.003728
ORF1ab/nsp1	85	M85del	ATG	---	13	13	AY.32	0.006922
ORF1ab/nsp1	85	M85del	ATG	---	13	13	AY.4.4	0.005319
ORF1ab/nsp1	85	M85del	ATG	---	13	13	AY.48	0.006047
ORF1ab/nsp1	85	M85del	ATG	---	13	13	B.1.1.222	0.002652
ORF1ab/nsp1	85	M85del	ATG	---	13	13	P.1.17.1	0.011374
ORF1ab/nsp1	85	M85del	ATG	---	13	13	P.2	0.002426
ORF1ab/nsp1	85	M85del	ATG	---	13	13	Q.8	0.002144
ORF1ab/nsp1	85	M85del	ATG	---	12	12	AY.88	0.01061
ORF1ab/nsp1	85	M85del	ATG	---	12	12	B.1.240	0.002587
ORF1ab/nsp1	85	M85del	ATG	---	12	12	C.36.3	0.006807
ORF1ab/nsp1	85	M85del	ATG	---	12	12	P.1.13	0.010782
ORF1ab/nsp1	85	M85del	ATG	---	11	11	AY.41	0.003233
ORF1ab/nsp1	85	M85del	ATG	---	11	11	AY.55	0.010092
ORF1ab/nsp1	85	M85del	ATG	---	11	11	B.1.1.523	0.017188
ORF1ab/nsp1	85	M85del	ATG	---	10	10	A.2.5	0.00499
ORF1ab/nsp1	85	M85del	ATG	---	10	10	AY.22	0.020921
ORF1ab/nsp1	85	M85del	ATG	---	10	10	AY.73	0.006653
ORF1ab/nsp1	85	M85del	ATG	---	10	10	AY.83	0.017241
ORF1ab/nsp1	85	M85del	ATG	---	10	10	B.1.1.305	0.03861
ORF1ab/nsp1	85	M85del	ATG	---	10	10	P.1.17	0.001618
ORF1ab/nsp1	85	M85del	ATG	---	9	9	AY.1	0.003562
ORF1ab/nsp1	85	M85del	ATG	---	9	9	AY.116.1	0.002803
ORF1ab/nsp1	85	M85del	ATG	---	9	9	AY.99	0.009444
ORF1ab/nsp1	85	M85del	ATG	---	9	9	B.1.1.348	0.007166
ORF1ab/nsp1	85	M85del	ATG	---	9	9	B.1.1.420	0.009054
ORF1ab/nsp1	85	M85del	ATG	---	9	9	B.1.177.42	0.00805
ORF1ab/nsp1	85	M85del	ATG	---	9	9	B.1.258.16	0.01473
ORF1ab/nsp1	85	M85del	ATG	---	9	9	B.1.623	0.004828
ORF1ab/nsp1	85	M85del	ATG	---	8	8	A.1	0.002255
ORF1ab/nsp1	85	M85del	ATG	---	8	8	AY.107	0.003728
ORF1ab/nsp1	85	M85del	ATG	---	8	8	AY.120.2	0.010283
ORF1ab/nsp1	85	M85del	ATG	---	8	8	AY.50	0.006395
ORF1ab/nsp1	85	M85del	ATG	---	8	8	B.1.1.82	0.307692
ORF1ab/nsp1	85	M85del	ATG	---	8	8	B.1.104	0.02952
ORF1ab/nsp1	85	M85del	ATG	---	8	8	B.1.177.26	0.055944
ORF1ab/nsp1	85	M85del	ATG	---	8	8	B.1.177.60	0.001747
ORF1ab/nsp1	85	M85del	ATG	---	8	8	B.1.349	0.005718
ORF1ab/nsp1	85	M85del	ATG	---	8	8	B.1.351.5	0.004796
ORF1ab/nsp1	85	M85del	ATG	---	8	8	B.1.36	0.001167
ORF1ab/nsp1	85	M85del	ATG	---	8	8	B.1.36.18	0.003361
ORF1ab/nsp1	85	M85del	ATG	---	8	8	B.1.36.9	0.025723
ORF1ab/nsp1	85	M85del	ATG	---	8	8	B.1.377	0.03653
ORF1ab/nsp1	85	M85del	ATG	---	8	8	B.1.400	0.003432
ORF1ab/nsp1	85	M85del	ATG	---	8	8	B.1.628	0.002819
ORF1ab/nsp1	85	M85del	ATG	---	8	8	B.4	0.01766
ORF1ab/nsp1	85	M85del	ATG	---	8	8	P.3	0.012759
ORF1ab/nsp1	85	M85del	ATG	---	7	7	A.2	0.004633
ORF1ab/nsp1	85	M85del	ATG	---	7	7	A.27	0.011589
ORF1ab/nsp1	85	M85del	ATG	---	7	7	AY.34.1	0.00357
ORF1ab/nsp1	85	M85del	ATG	---	7	7	AY.4.3	0.005892
ORF1ab/nsp1	85	M85del	ATG	---	7	7	AY.52	0.0057
ORF1ab/nsp1	85	M85del	ATG	---	7	7	AY.58	0.006352
ORF1ab/nsp1	85	M85del	ATG	---	7	7	AY.59	0.003708
ORF1ab/nsp1	85	M85del	ATG	---	7	7	AY.63	0.002708
ORF1ab/nsp1	85	M85del	ATG	---	7	7	AY.66	0.007487
ORF1ab/nsp1	85	M85del	ATG	---	7	7	AY.68	0.001916
ORF1ab/nsp1	85	M85del	ATG	---	7	7	AY.82	0.009498
ORF1ab/nsp1	85	M85del	ATG	---	7	7	AY.84	0.003062
ORF1ab/nsp1	85	M85del	ATG	---	7	7	B.1.1.170	0.008728
ORF1ab/nsp1	85	M85del	ATG	---	7	7	B.1.1.232	0.012704
ORF1ab/nsp1	85	M85del	ATG	---	7	7	B.1.1.304	0.019663
ORF1ab/nsp1	85	M85del	ATG	---	7	7	B.1.1.416	0.006335
ORF1ab/nsp1	85	M85del	ATG	---	7	7	B.1.111	0.008226
ORF1ab/nsp1	85	M85del	ATG	---	7	7	B.1.177.81	0.001325
ORF1ab/nsp1	85	M85del	ATG	---	7	7	B.1.177.86	0.001284
ORF1ab/nsp1	85	M85del	ATG	---	7	7	B.1.214.2	0.004197
ORF1ab/nsp1	85	M85del	ATG	---	7	7	B.1.351.2	0.002118
ORF1ab/nsp1	85	M85del	ATG	---	7	7	B.1.609	0.003356
ORF1ab/nsp1	85	M85del	ATG	---	7	7	P.1.16	0.002619
ORF1ab/nsp1	85	M85del	ATG	---	6	6	AT.1	0.030769
ORF1ab/nsp1	85	M85del	ATG	---	6	6	AY.2	0.002137
ORF1ab/nsp1	85	M85del	ATG	---	6	6	AY.29.1	0.001323
ORF1ab/nsp1	85	M85del	ATG	---	6	6	AY.30	0.002374
ORF1ab/nsp1	85	M85del	ATG	---	6	6	AY.69	0.00112
ORF1ab/nsp1	85	M85del	ATG	---	6	6	AY.99.1	0.009317
ORF1ab/nsp1	85	M85del	ATG	---	6	6	B.1.1.132	0.089552
ORF1ab/nsp1	85	M85del	ATG	---	6	6	B.1.1.28	0.001867
ORF1ab/nsp1	85	M85del	ATG	---	6	6	B.1.1.317	0.00247
ORF1ab/nsp1	85	M85del	ATG	---	6	6	B.1.110.1	0.6
ORF1ab/nsp1	85	M85del	ATG	---	6	6	B.1.177.12	0.00091
ORF1ab/nsp1	85	M85del	ATG	---	6	6	B.1.177.43	0.008863
ORF1ab/nsp1	85	M85del	ATG	---	6	6	B.1.22	0.007905
ORF1ab/nsp1	85	M85del	ATG	---	6	6	B.1.36.25	0.013245
ORF1ab/nsp1	85	M85del	ATG	---	6	6	B.1.378	0.041096
ORF1ab/nsp1	85	M85del	ATG	---	6	6	B.1.409	0.004687
ORF1ab/nsp1	85	M85del	ATG	---	6	6	B.29	0.021053
ORF1ab/nsp1	85	M85del	ATG	---	6	6	P.1.15	0.001394
ORF1ab/nsp1	85	M85del	ATG	---	6	6	Q.3	0.00087
ORF1ab/nsp1	85	M85del	ATG	---	5	5	A	0.001935
ORF1ab/nsp1	85	M85del	ATG	---	5	5	A.23.1	0.003521
ORF1ab/nsp1	85	M85del	ATG	---	5	5	AY.108	0.005513
ORF1ab/nsp1	85	M85del	ATG	---	5	5	AY.40	0.004822
ORF1ab/nsp1	85	M85del	ATG	---	5	5	B.1.1.198	0.007342
ORF1ab/nsp1	85	M85del	ATG	---	5	5	B.1.1.288	0.009579
ORF1ab/nsp1	85	M85del	ATG	---	5	5	B.1.1.33	0.002104
ORF1ab/nsp1	85	M85del	ATG	---	5	5	B.1.177.44	0.002595
ORF1ab/nsp1	85	M85del	ATG	---	5	5	B.1.177.7	0.000824
ORF1ab/nsp1	85	M85del	ATG	---	5	5	B.1.311	0.001373
ORF1ab/nsp1	85	M85del	ATG	---	5	5	B.1.380	0.033113
ORF1ab/nsp1	85	M85del	ATG	---	5	5	B.1.575	0.001517
ORF1ab/nsp1	85	M85del	ATG	---	5	5	B.1.595	0.001305
ORF1ab/nsp1	85	M85del	ATG	---	5	5	B.1.617.1	0.000645
ORF1ab/nsp1	85	M85del	ATG	---	5	5	B.1.632	0.033557
ORF1ab/nsp1	85	M85del	ATG	---	5	5	C.36	0.004554
ORF1ab/nsp1	85	M85del	ATG	---	5	5	P.1.7	0.001596
ORF1ab/nsp1	85	M85del	ATG	---	4	4	AY.21	0.00759
ORF1ab/nsp1	85	M85del	ATG	---	4	4	AY.23.1	0.001669
ORF1ab/nsp1	85	M85del	ATG	---	4	4	AY.78	0.006163
ORF1ab/nsp1	85	M85del	ATG	---	4	4	AY.95	0.003044
ORF1ab/nsp1	85	M85del	ATG	---	4	4	B.1.1.1	0.001307
ORF1ab/nsp1	85	M85del	ATG	---	4	4	B.1.1.138	0.024242
ORF1ab/nsp1	85	M85del	ATG	---	4	4	B.1.1.306	0.001754
ORF1ab/nsp1	85	M85del	ATG	---	4	4	B.1.1.307	0.010127
ORF1ab/nsp1	85	M85del	ATG	---	4	4	B.1.1.327	0.4
ORF1ab/nsp1	85	M85del	ATG	---	4	4	B.1.1.409	0.011331
ORF1ab/nsp1	85	M85del	ATG	---	4	4	B.1.1.432	0.005063
ORF1ab/nsp1	85	M85del	ATG	---	4	4	B.1.110.3	0.002874
ORF1ab/nsp1	85	M85del	ATG	---	4	4	B.1.177.4	0.000844
ORF1ab/nsp1	85	M85del	ATG	---	4	4	B.1.177.6	0.003906
ORF1ab/nsp1	85	M85del	ATG	---	4	4	B.1.177.87	0.002911
ORF1ab/nsp1	85	M85del	ATG	---	4	4	B.1.214.4	0.036364
ORF1ab/nsp1	85	M85del	ATG	---	4	4	B.1.279	0.002054
ORF1ab/nsp1	85	M85del	ATG	---	4	4	B.1.36.29	0.002069
ORF1ab/nsp1	85	M85del	ATG	---	4	4	B.1.404	0.005208
ORF1ab/nsp1	85	M85del	ATG	---	4	4	B.1.466.2	0.001565
ORF1ab/nsp1	85	M85del	ATG	---	4	4	B.1.565	0.003241
ORF1ab/nsp1	85	M85del	ATG	---	4	4	B.1.634	0.013699
ORF1ab/nsp1	85	M85del	ATG	---	4	4	B.1.8	0.00789
ORF1ab/nsp1	85	M85del	ATG	---	4	4	B.3	0.003322
ORF1ab/nsp1	85	M85del	ATG	---	4	4	B.39	0.009324
ORF1ab/nsp1	85	M85del	ATG	---	4	4	P.1.12	0.001936
ORF1ab/nsp1	85	M85del	ATG	---	3	3	AY.39.2	0.004622
ORF1ab/nsp1	85	M85del	ATG	---	3	3	AY.49	0.009585
ORF1ab/nsp1	85	M85del	ATG	---	3	3	AY.67	0.001393
ORF1ab/nsp1	85	M85del	ATG	---	3	3	AY.72	0.004082
ORF1ab/nsp1	85	M85del	ATG	---	3	3	AY.77	0.003382
ORF1ab/nsp1	85	M85del	ATG	---	3	3	AZ.1	0.002602
ORF1ab/nsp1	85	M85del	ATG	---	3	3	AZ.2	0.002463
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.1.129	0.027523
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.1.176	0.001318
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.1.189	0.004539
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.1.207	0.003546
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.1.216	0.002671
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.1.218	0.023077
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.1.277	0.002276
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.1.294	0.003797
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.1.299	0.036585
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.1.316	0.002775
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.1.369	0.001339
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.1.486	0.004732
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.1.52	0.036585
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.1.528	0.014423
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.108	0.017442
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.128	0.001906
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.147	0.002268
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.160.26	0.007264
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.160.8	0.003866
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.177.16	0.001993
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.177.8	0.002257
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.177.82	0.001432
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.320	0.003736
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.329	0.001823
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.351.3	0.002629
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.356	0.005181
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.36.21	0.006479
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.36.8	0.003
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.361	0.003866
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.366	0.014634
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.375	0.002459
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.396	0.002117
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.425	0.008982
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.428	0.003061
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.499	0.003151
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.509	0.002597
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.582	0.001472
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.588	0.00273
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.619	0.002613
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.1.620	0.002838
ORF1ab/nsp1	85	M85del	ATG	---	3	3	B.55	0.00885
ORF1ab/nsp1	85	M85del	ATG	---	3	3	C.1	0.007177
ORF1ab/nsp1	85	M85del	ATG	---	3	3	C.16	0.003181
ORF1ab/nsp1	85	M85del	ATG	---	3	3	C.30.1	0.020134
ORF1ab/nsp1	85	M85del	ATG	---	3	3	P.1.4	0.00293
ORF1ab/nsp1	85	M85del	ATG	---	3	3	Q.2	0.00184
ORF1ab/nsp1	85	M85del	ATG	---	3	3	Q.7	0.003333
ORF1ab/nsp1	85	M85del	ATG	---	2	2	A.2.3	0.009479
ORF1ab/nsp1	85	M85del	ATG	---	2	2	A.2.5.2	0.003145
ORF1ab/nsp1	85	M85del	ATG	---	2	2	AY.57	0.001312
ORF1ab/nsp1	85	M85del	ATG	---	2	2	AY.79	0.002421
ORF1ab/nsp1	85	M85del	ATG	---	2	2	AY.81	0.003984
ORF1ab/nsp1	85	M85del	ATG	---	2	2	AY.85	0.000854
ORF1ab/nsp1	85	M85del	ATG	---	2	2	AY.86	0.00166
ORF1ab/nsp1	85	M85del	ATG	---	2	2	AY.89	0.009804
ORF1ab/nsp1	85	M85del	ATG	---	2	2	AY.91.1	0.00813
ORF1ab/nsp1	85	M85del	ATG	---	2	2	AY.96	0.004149
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.1.10	0.00223
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.1.169	0.036364
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.1.265	0.006309
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.1.286	0.005797
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.1.297	0.004474
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.1.303	0.005525
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.1.349	0.020619
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.1.411	0.029412
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.1.448	0.004065
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.1.46	0.008734
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.1.464	0.002946
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.1.47	0.010695
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.1.89	0.012121
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.126	0.002551
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.151	0.022222
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.157	0.00597
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.177.15	0.001262
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.177.18	0.00232
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.177.31	0.022989
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.177.35	0.001382
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.177.5	0.002484
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.177.54	0.001213
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.177.57	0.000562
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.177.70	0.011834
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.177.72	0.00678
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.177.73	0.001133
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.179	0.007519
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.190	0.02
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.206	0.001631
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.221.2	0.008032
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.221.3	0.001667
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.223	0.005556
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.239	0.002442
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.258.2	0.009009
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.258.7	0.003824
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.265	0.002541
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.289	0.005319
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.336	0.004878
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.344	0.016393
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.35	0.016949
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.36.17	0.000988
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.36.36	0.001204
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.36.7	0.008
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.422	0.001625
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.426	0.002018
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.469	0.00722
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.471	0.005464
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.474	0.003802
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.480	0.004975
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.561	0.000794
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.564	0.000852
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.568	0.002222
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.577	0.001375
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.587	0.003795
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.600	0.011696
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.618	0.008065
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.619.1	0.001283
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.1.622	0.025974
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.23	0.005848
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.30	0.029412
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.5	0.076923
ORF1ab/nsp1	85	M85del	ATG	---	2	2	B.6	0.00182
ORF1ab/nsp1	85	M85del	ATG	---	2	2	C.1.2	0.008511
ORF1ab/nsp1	85	M85del	ATG	---	2	2	C.18	0.005181
ORF1ab/nsp1	85	M85del	ATG	---	2	2	C.31	0.035714
ORF1ab/nsp1	85	M85del	ATG	---	2	2	C.35	0.001548
ORF1ab/nsp1	85	M85del	ATG	---	2	2	C.38	0.016129
ORF1ab/nsp1	85	M85del	ATG	---	2	2	N.4	0.008511
ORF1ab/nsp1	85	M85del	ATG	---	2	2	N.6	0.014184
ORF1ab/nsp1	85	M85del	ATG	---	2	2	P.1.2	0.002312
ORF1ab/nsp1	85	M85del	ATG	---	2	2	P.1.6	0.003891
ORF1ab/nsp1	85	M85del	ATG	---	2	2	W.2	0.009662
ORF1ab/nsp1	85	M85del	ATG	---	1	1	A.21	0.00277
ORF1ab/nsp1	85	M85del	ATG	---	1	1	A.23	0.010526
ORF1ab/nsp1	85	M85del	ATG	---	1	1	A.29	0.005319
ORF1ab/nsp1	85	M85del	ATG	---	1	1	AA.2	0.007692
ORF1ab/nsp1	85	M85del	ATG	---	1	1	AB.1	0.008197
ORF1ab/nsp1	85	M85del	ATG	---	1	1	AE.1	0.011364
ORF1ab/nsp1	85	M85del	ATG	---	1	1	AP.1	0.001502
ORF1ab/nsp1	85	M85del	ATG	---	1	1	AW.1	0.003049
ORF1ab/nsp1	85	M85del	ATG	---	1	1	AY.104	0.001984
ORF1ab/nsp1	85	M85del	ATG	---	1	1	AY.5.1	0.003759
ORF1ab/nsp1	85	M85del	ATG	---	1	1	AY.9.2.1	0.001976
ORF1ab/nsp1	85	M85del	ATG	---	1	1	AZ.2.1	0.00813
ORF1ab/nsp1	85	M85del	ATG	---	1	1	AZ.3	0.00152
ORF1ab/nsp1	85	M85del	ATG	---	1	1	AZ.4	0.003356
ORF1ab/nsp1	85	M85del	ATG	---	1	1	AZ.5	0.003509
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.101	0.01
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.125	0.010204
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.128	0.007092
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.134	0.011364
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.135	0.004695
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.139	0.022727
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.153	0.001095
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.159	0.004673
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.161	0.003534
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.228	0.003049
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.231	0.003096
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.253	0.002506
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.263	0.001558
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.269	0.001353
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.280	0.003086
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.289	0.002083
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.291	0.000742
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.301	0.001179
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.308	0.011765
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.326	0.001761
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.334	0.016393
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.360	0.03125
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.372	0.000689
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.38	0.058824
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.382	0.035714
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.384	0.02381
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.385	0.004464
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.397	0.002252
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.398	0.003226
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.4	0.002976
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.406	0.006494
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.421	0.030303
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.428	0.009434
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.433	0.001425
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.447	0.035714
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.458	0.041667
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.463	0.0625
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.487	0.005587
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.500	0.02
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.517	0.006803
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.518	0.006329
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.57	0.011494
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.63	0.000386
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.67	0.004566
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.1.8	0.003584
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.112	0.005181
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.127	0.002198
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.139	0.000733
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.143	0.021277
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.160.10	0.008065
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.160.14	0.002119
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.160.16	0.000929
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.160.17	0.001701
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.160.19	0.035714
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.160.21	0.020408
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.160.24	0.004425
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.160.28	0.002924
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.160.32	0.004292
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.161	0.017241
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.177.10	0.000878
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.177.11	0.001698
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.177.19	0.001431
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.177.27	0.009434
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.177.38	0.010417
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.177.45	0.000381
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.177.53	0.002392
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.177.58	0.001332
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.177.65	0.000665
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.177.76	0.002494
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.177.77	0.000726
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.177.83	0.001481
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.177.89	0.02439
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.189	0.004292
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.199	0.004132
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.211	0.025
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.221.1	0.002907
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.221.4	0.004167
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.222	0.001692
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.235	0.002519
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.236	0.002053
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.241	0.000812
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.250	0.014493
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.252	0.006623
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.258.14	0.00098
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.258.9	0.005
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.274	0.011905
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.277	0.02381
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.287	0.030303
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.298	0.002114
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.305	0.002151
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.306	0.005714
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.313	0.006579
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.314	0.007519
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.324	0.001605
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.326	0.007576
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.340	0.004292
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.346	0.001311
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.350	0.002933
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.36.16	0.001425
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.36.31	0.001751
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.36.34	0.021277
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.362	0.001541
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.367	0.000792
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.369	0.000285
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.391	0.001127
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.397	0.004854
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.403	0.003268
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.406	0.006061
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.408	0.00369
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.416	0.001269
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.421	0.007463
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.424	0.008065
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.433	0.003195
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.434	0.052632
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.436	0.001029
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.439	0.005917
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.456	0.003268
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.463	0.008065
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.465	0.003802
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.468	0.005714
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.487	0.019608
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.491	0.052632
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.506	0.02381
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.517	0.000427
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.523	0.002451
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.532	0.006211
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.533	0.009615
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.540	0.009709
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.541	0.004425
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.543	0.01
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.545	0.014493
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.550	0.013699
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.551	0.00129
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.556	0.007519
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.562	0.018519
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.571	0.009709
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.576	0.000907
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.581	0.009434
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.586	0.010989
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.589	0.007576
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.593	0.01087
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.595.1	0.005848
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.595.3	0.026316
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.596.1	0.009346
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.597	0.00463
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.599	0.00365
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.601	0.030303
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.602	0.006536
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.605	0.005952
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.612	0.002653
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.617.3	0.002985
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.625	0.002353
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.626	0.005714
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.627	0.00202
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.630	0.005236
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.631	0.003367
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.84	0.020833
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.91	0.002075
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.1.94	0.027027
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.3.1	0.001658
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.35	0.007812
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.4.4	0.018868
ORF1ab/nsp1	85	M85del	ATG	---	1	1	B.49	0.05
ORF1ab/nsp1	85	M85del	ATG	---	1	1	C.26	0.007353
ORF1ab/nsp1	85	M85del	ATG	---	1	1	C.30	0.001727
ORF1ab/nsp1	85	M85del	ATG	---	1	1	C.36.1	0.004149
ORF1ab/nsp1	85	M85del	ATG	---	1	1	C.36.3.1	0.002717
ORF1ab/nsp1	85	M85del	ATG	---	1	1	C.8	0.004464
ORF1ab/nsp1	85	M85del	ATG	---	1	1	D.5	0.004975
ORF1ab/nsp1	85	M85del	ATG	---	1	1	L.1	0.001905
ORF1ab/nsp1	85	M85del	ATG	---	1	1	L.3	0.003546
ORF1ab/nsp1	85	M85del	ATG	---	1	1	N.10	0.029412
ORF1ab/nsp1	85	M85del	ATG	---	1	1	N.2	0.038462
ORF1ab/nsp1	85	M85del	ATG	---	1	1	N.3	0.005814
ORF1ab/nsp1	85	M85del	ATG	---	1	1	N.5	0.001767
ORF1ab/nsp1	85	M85del	ATG	---	1	1	P.5	0.013699
ORF1ab/nsp1	85	M85del	ATG	---	1	1	Q.4	0.000455
ORF1ab/nsp1	85	M85del	ATG	---	1	1	Q.6	0.006623
ORF1ab/nsp1	85	M85del	ATG	---	1	1	S.1	0.00495
ORF1ab/nsp1	85	M85del	ATG	---	1	1	U.3	0.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.