CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 88 | L88L | L88L | syn | ctG | ctT | 12483 | 7453 | 0.597052 | 527-529 |
ORF1ab/nsp1 | 88 | L88L | L88L | syn | Ctg | Ttg | 12483 | 4053 | 0.324682 | 527-529 |
ORF1ab/nsp1 | 88 | L88L | L88L | syn | ctG | ctA | 12483 | 957 | 0.0766643 | 527-529 |
ORF1ab/nsp1 | 88 | L88L | L88L | syn | ctG | ctC | 12483 | 19 | 0.00152207 | 527-529 |
ORF1ab/nsp1 | 88 | L88L | L88L | syn | CtG | TtA | 12483 | 1 | 0.0000801089 | 527-529 |
Details of the mutation L88L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 7453 | 12483 | All | 0.001425 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 4053 | 12483 | All | 0.000775 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 957 | 12483 | All | 0.000183 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctC | 19 | 12483 | All | 0.000004 |
ORF1ab/nsp1 | 88 | L88L | CtG | TtA | 1 | 12483 | All | 0 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2240 | 2554 | B.1.1.7 | 0.002005 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 259 | 2554 | B.1.1.7 | 0.000232 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 53 | 2554 | B.1.1.7 | 0.000047 |
ORF1ab/nsp1 | 88 | L88L | CtG | TtA | 1 | 2554 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctC | 1 | 2554 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2372 | 2376 | R.1 | 0.213501 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 2 | 2376 | R.1 | 0.00018 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 2376 | R.1 | 0.00018 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 396 | 681 | AY.4 | 0.000616 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 199 | 681 | AY.4 | 0.00031 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 82 | 681 | AY.4 | 0.000128 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctC | 4 | 681 | AY.4 | 0.000006 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 238 | 595 | B.1.617.2 | 0.000896 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 232 | 595 | B.1.617.2 | 0.000874 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 124 | 595 | B.1.617.2 | 0.000467 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctC | 1 | 595 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 550 | 550 | B.1.561 | 0.218341 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 301 | 311 | AY.61 | 0.031538 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 5 | 311 | AY.61 | 0.000524 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctC | 4 | 311 | AY.61 | 0.000419 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 311 | AY.61 | 0.000105 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 229 | 297 | B.1.2 | 0.002016 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 62 | 297 | B.1.2 | 0.000546 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 6 | 297 | B.1.2 | 0.000053 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 275 | 283 | AY.119 | 0.00971 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 6 | 283 | AY.119 | 0.000212 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 283 | AY.119 | 0.000071 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 265 | 265 | B.1.36.1 | 0.302166 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 123 | 242 | B.1 | 0.001127 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 112 | 242 | B.1 | 0.001026 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 5 | 242 | B.1 | 0.000046 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctC | 2 | 242 | B.1 | 0.000018 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 232 | 238 | AY.5 | 0.004791 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 5 | 238 | AY.5 | 0.000103 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 238 | AY.5 | 0.000021 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 148 | 176 | B.1.177 | 0.001949 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 23 | 176 | B.1.177 | 0.000303 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 5 | 176 | B.1.177 | 0.000066 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 153 | 153 | B.1.258.11 | 0.060642 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 136 | 138 | B.1.525 | 0.01539 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 138 | B.1.525 | 0.000113 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 138 | B.1.525 | 0.000113 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 108 | 132 | AY.25 | 0.00065 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 22 | 132 | AY.25 | 0.000132 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 2 | 132 | AY.25 | 0.000012 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 75 | 125 | AY.44 | 0.000457 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 35 | 125 | AY.44 | 0.000213 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 12 | 125 | AY.44 | 0.000073 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctC | 3 | 125 | AY.44 | 0.000018 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 121 | 121 | B.1.258.21 | 0.937984 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 101 | 115 | B.1.526 | 0.002374 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 14 | 115 | B.1.526 | 0.000329 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 50 | 109 | AY.103 | 0.00031 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 49 | 109 | AY.103 | 0.000304 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 10 | 109 | AY.103 | 0.000062 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 97 | 98 | AD.2 | 0.021239 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 98 | AD.2 | 0.000219 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 67 | 95 | B.1.1 | 0.001215 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 27 | 95 | B.1.1 | 0.00049 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 95 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 58 | 93 | AY.43 | 0.000257 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 33 | 93 | AY.43 | 0.000146 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 2 | 93 | AY.43 | 0.000009 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 91 | 91 | B.1.1.220 | 0.169145 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 78 | 85 | AY.121 | 0.010555 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 4 | 85 | AY.121 | 0.000541 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 3 | 85 | AY.121 | 0.000406 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 79 | 81 | P.1.15 | 0.018355 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2 | 81 | P.1.15 | 0.000465 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 78 | 78 | B.1.1.280 | 0.240741 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 42 | 77 | AY.102 | 0.001114 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 31 | 77 | AY.102 | 0.000822 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 4 | 77 | AY.102 | 0.000106 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 32 | 72 | AY.3 | 0.000318 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 26 | 72 | AY.3 | 0.000259 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 14 | 72 | AY.3 | 0.000139 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 63 | 71 | B.1.258 | 0.004192 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 6 | 71 | B.1.258 | 0.000399 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 2 | 71 | B.1.258 | 0.000133 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 68 | 68 | B.1.110.3 | 0.048851 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 35 | 67 | P.1 | 0.000551 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 22 | 67 | P.1 | 0.000347 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 10 | 67 | P.1 | 0.000158 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 62 | 64 | B.1.240 | 0.013365 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2 | 64 | B.1.240 | 0.000431 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 54 | 60 | AY.46.6 | 0.003899 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 5 | 60 | AY.46.6 | 0.000361 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 60 | AY.46.6 | 0.000072 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 58 | 59 | AY.34 | 0.005624 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 59 | AY.34 | 0.000097 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 56 | 58 | AY.64 | 0.033333 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2 | 58 | AY.64 | 0.00119 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 32 | 56 | AY.20 | 0.001244 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 16 | 56 | AY.20 | 0.000622 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 8 | 56 | AY.20 | 0.000311 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 25 | 56 | B.1.1.519 | 0.000993 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 17 | 56 | B.1.1.519 | 0.000675 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 13 | 56 | B.1.1.519 | 0.000516 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctC | 1 | 56 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 56 | 56 | Q.8 | 0.009235 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 45 | 52 | AY.39 | 0.001112 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 6 | 52 | AY.39 | 0.000148 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 52 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 43 | 47 | B.1.427 | 0.002171 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 4 | 47 | B.1.427 | 0.000202 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 33 | 46 | AY.26 | 0.000934 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 13 | 46 | AY.26 | 0.000368 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 36 | 45 | B.1.160 | 0.001123 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 9 | 45 | B.1.160 | 0.000281 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 43 | 43 | B.1.1.353 | 0.895833 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 19 | 42 | AY.120 | 0.000706 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 12 | 42 | AY.120 | 0.000446 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 11 | 42 | AY.120 | 0.000409 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 38 | 42 | AY.62 | 0.016558 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 3 | 42 | AY.62 | 0.001307 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 42 | AY.62 | 0.000436 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 18 | 42 | B.1.351 | 0.000535 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 17 | 42 | B.1.351 | 0.000505 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 6 | 42 | B.1.351 | 0.000178 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctC | 1 | 42 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 28 | 35 | B.1.596 | 0.00244 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 7 | 35 | B.1.596 | 0.00061 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 31 | 33 | AY.108 | 0.034179 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 33 | AY.108 | 0.002205 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 32 | 33 | AY.54 | 0.003051 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 33 | AY.54 | 0.000095 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 26 | 33 | B.1.243 | 0.001809 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 7 | 33 | B.1.243 | 0.000487 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 30 | 30 | B.1.1.120 | 1 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 22 | 30 | B.1.36 | 0.00321 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 7 | 30 | B.1.36 | 0.001021 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 30 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 15 | 29 | B.1.429 | 0.000353 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 13 | 29 | B.1.429 | 0.000306 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 29 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 23 | 25 | AY.23 | 0.001604 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 25 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 25 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 25 | 25 | C.36.3 | 0.01418 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 13 | 23 | AY.47 | 0.000404 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 9 | 23 | AY.47 | 0.00028 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 23 | AY.47 | 0.000031 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 12 | 23 | AY.9.2 | 0.000441 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 9 | 23 | AY.9.2 | 0.000331 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 2 | 23 | AY.9.2 | 0.000073 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 22 | 22 | A.23.1 | 0.015493 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 21 | 21 | B.1.177.61 | 0.913043 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 18 | 20 | AY.6 | 0.00074 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 2 | 20 | AY.6 | 0.000082 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 18 | 20 | B.1.637 | 0.001315 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2 | 20 | B.1.637 | 0.000146 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 16 | 18 | A.2.5 | 0.007984 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2 | 18 | A.2.5 | 0.000998 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 16 | 16 | AY.71 | 0.007601 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 14 | 16 | AY.98 | 0.001106 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 16 | AY.98 | 0.000079 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 16 | AY.98 | 0.000079 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 13 | 15 | AY.117 | 0.001099 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 15 | AY.117 | 0.000085 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 15 | AY.117 | 0.000085 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 10 | 15 | AY.4.2 | 0.000217 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 5 | 15 | AY.4.2 | 0.000108 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 12 | 15 | C.37 | 0.001393 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 3 | 15 | C.37 | 0.000348 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 7 | 14 | AY.13 | 0.001127 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 7 | 14 | AY.13 | 0.001127 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 14 | 14 | B.1.36.18 | 0.005882 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 8 | 13 | AY.29 | 0.000126 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 4 | 13 | AY.29 | 0.000063 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 13 | AY.29 | 0.000016 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 11 | 13 | AY.42 | 0.000443 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 13 | AY.42 | 0.00004 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 13 | AY.42 | 0.00004 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 11 | 13 | AY.75.1 | 0.001983 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 13 | AY.75.1 | 0.000361 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 10 | 12 | A.21 | 0.027701 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 12 | A.21 | 0.00554 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 10 | 12 | AY.14 | 0.00088 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 12 | AY.14 | 0.000088 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 12 | AY.14 | 0.000088 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 12 | 12 | B.1.1.451 | 0.461538 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 11 | 12 | B.1.258.17 | 0.001144 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 12 | B.1.258.17 | 0.000104 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 8 | 11 | AY.55 | 0.007339 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 3 | 11 | AY.55 | 0.002752 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 8 | 11 | B.1.576 | 0.007253 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2 | 11 | B.1.576 | 0.001813 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctC | 1 | 11 | B.1.576 | 0.000907 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 9 | 10 | AY.16.1 | 0.004229 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 10 | AY.16.1 | 0.00047 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 10 | 10 | B.1.177.44 | 0.005189 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 10 | 10 | B.1.221 | 0.00071 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 10 | 10 | P.6 | 0.031447 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 5 | 9 | AY.100 | 0.00023 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 3 | 9 | AY.100 | 0.000138 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 9 | AY.100 | 0.000046 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 8 | 9 | AY.106 | 0.002679 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 9 | AY.106 | 0.000335 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 6 | 9 | AY.39.1 | 0.000238 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2 | 9 | AY.39.1 | 0.000079 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 9 | AY.39.1 | 0.00004 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 6 | 9 | AY.46 | 0.000624 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 3 | 9 | AY.46 | 0.000312 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 5 | 9 | AY.75 | 0.00028 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 4 | 9 | AY.75 | 0.000224 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 5 | 9 | AY.99.2 | 0.000461 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 4 | 9 | AY.99.2 | 0.000369 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 7 | 9 | B.1.1.28 | 0.002179 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2 | 9 | B.1.1.28 | 0.000622 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 7 | 9 | B.1.582 | 0.003435 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 9 | B.1.582 | 0.000491 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 9 | B.1.582 | 0.000491 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 7 | 9 | B.1.617.1 | 0.000903 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2 | 9 | B.1.617.1 | 0.000258 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 6 | 9 | P.1.14 | 0.000287 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 2 | 9 | P.1.14 | 0.000096 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 9 | P.1.14 | 0.000048 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 6 | 9 | Q.1 | 0.000758 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 3 | 9 | Q.1 | 0.000379 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 5 | 8 | AY.45 | 0.000608 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 3 | 8 | AY.45 | 0.000365 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 6 | 8 | AY.7.1 | 0.000676 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 8 | AY.7.1 | 0.000113 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 8 | AY.7.1 | 0.000113 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 7 | 8 | B.1.177.21 | 0.000535 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 8 | B.1.177.21 | 0.000076 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 5 | 8 | B.1.595 | 0.001305 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 8 | B.1.595 | 0.000522 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 8 | B.1.595 | 0.000261 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 5 | 8 | B.1.621 | 0.000443 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 3 | 8 | B.1.621 | 0.000266 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 6 | 8 | P.1.17 | 0.000971 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 8 | P.1.17 | 0.000324 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 8 | 8 | P.3 | 0.012759 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 3 | 7 | AY.118 | 0.000188 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 3 | 7 | AY.118 | 0.000188 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 7 | AY.118 | 0.000063 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 5 | 7 | B.1.1.222 | 0.00102 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 7 | B.1.1.222 | 0.000204 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 7 | B.1.1.222 | 0.000204 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 7 | 7 | B.1.1.284 | 0.000752 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 6 | 7 | B.1.1.50 | 0.004073 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 7 | B.1.1.50 | 0.000679 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 7 | 7 | B.1.232 | 0.003761 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 7 | 7 | B.1.369 | 0.001997 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 4 | 7 | B.1.551 | 0.005161 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 3 | 7 | B.1.551 | 0.003871 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 7 | 7 | C.36 | 0.006375 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 5 | 6 | AY.9.1 | 0.000419 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 6 | AY.9.1 | 0.000084 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 6 | 6 | B.1.1.416 | 0.00543 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 6 | 6 | B.1.177.10 | 0.005268 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 4 | 6 | D.2 | 0.0003 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 6 | D.2 | 0.00015 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 3 | 5 | AY.33 | 0.0002 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2 | 5 | AY.33 | 0.000134 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 3 | 5 | AY.74 | 0.000347 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 5 | AY.74 | 0.000231 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 3 | 5 | B | 0.000383 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2 | 5 | B | 0.000256 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 5 | 5 | B.1.1.348 | 0.003981 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 5 | 5 | B.1.1.89 | 0.030303 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 5 | 5 | B.1.177.82 | 0.002387 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 3 | 5 | B.1.36.29 | 0.001552 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 5 | B.1.36.29 | 0.000517 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 5 | B.1.36.29 | 0.000517 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 5 | 5 | B.1.517 | 0.002135 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 5 | 5 | C.16 | 0.005302 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 4 | 5 | P.2 | 0.000747 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 5 | P.2 | 0.000187 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 3 | 4 | AY.116 | 0.00086 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 4 | AY.116 | 0.000287 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 4 | 4 | AY.16 | 0.001519 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 4 | AY.24 | 0.000862 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2 | 4 | AY.24 | 0.000862 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 3 | 4 | AY.36 | 0.000445 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 4 | AY.36 | 0.000148 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 3 | 4 | AY.46.2 | 0.001906 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 4 | AY.46.2 | 0.000635 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 4 | 4 | AY.70 | 0.000834 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 3 | 4 | AY.9 | 0.000203 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 4 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 4 | 4 | B.1.1.174 | 0.013514 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 4 | 4 | B.1.1.37 | 0.000771 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 4 | 4 | B.1.1.434 | 0.001394 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 4 | 4 | B.1.214.2 | 0.002398 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 4 | 4 | B.1.399 | 0.007737 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 4 | 4 | B.1.408 | 0.01476 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 3 | 4 | B.1.609 | 0.001438 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 4 | B.1.609 | 0.000479 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 2 | 3 | A | 0.000774 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 3 | A | 0.000387 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 2 | 3 | A.1 | 0.000564 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 3 | A.1 | 0.000282 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2 | 3 | AY.120.2 | 0.002571 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 3 | AY.120.2 | 0.001285 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2 | 3 | AY.80 | 0.002257 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 3 | AY.80 | 0.001129 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 3 | 3 | AY.81 | 0.005976 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 3 | AY.92 | 0.000287 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 3 | AY.92 | 0.000287 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 3 | AY.92 | 0.000287 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 3 | AY.98.1 | 0.000097 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 3 | AY.98.1 | 0.000048 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 3 | 3 | B.1.1.192 | 0.006928 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 3 | 3 | B.1.1.526 | 0.010638 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 3 | B.1.1.70 | 0.000682 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 3 | B.1.1.70 | 0.000341 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 2 | 3 | B.1.177.4 | 0.000422 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 3 | B.1.177.4 | 0.000211 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 3 | 3 | B.1.36.17 | 0.001482 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 3 | 3 | B.1.396 | 0.002117 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2 | 3 | B.1.499 | 0.002101 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 3 | B.1.499 | 0.00105 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 3 | 3 | B.1.621.1 | 0.001517 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 2 | AY.113 | 0.000142 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 2 | AY.113 | 0.000142 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 2 | AY.27 | 0.000065 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 2 | AY.27 | 0.000065 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 2 | AY.4.5 | 0.000107 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 2 | AY.4.5 | 0.000107 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2 | 2 | AY.60 | 0.001876 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 2 | AY.7 | 0.000196 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 2 | AY.7 | 0.000196 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 2 | AY.89 | 0.009804 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2 | 2 | B.1.1.159 | 0.009346 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 2 | B.1.1.241 | 0.004141 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 2 | B.1.1.316 | 0.00185 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 2 | B.1.1.33 | 0.000421 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 2 | B.1.1.33 | 0.000421 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2 | 2 | B.1.1.355 | 0.030769 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 2 | B.1.1.368 | 0.006173 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 2 | B.1.1.372 | 0.000689 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 2 | B.1.1.372 | 0.000689 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 2 | B.1.1.448 | 0.002033 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 2 | B.1.1.448 | 0.002033 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 2 | 2 | B.1.1.51 | 0.003436 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 2 | B.1.177.6 | 0.000977 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 2 | B.1.177.6 | 0.000977 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 2 | B.1.260 | 0.006689 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 2 | B.1.279 | 0.000514 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 2 | B.1.279 | 0.000514 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 2 | B.1.356 | 0.003454 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 2 | B.1.371 | 0.002245 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 2 | B.1.469 | 0.00361 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 2 | B.1.469 | 0.00361 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 2 | B.1.601 | 0.060606 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 2 | B.1.610 | 0.007092 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 2 | B.1.9.5 | 0.011364 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 2 | 2 | B.3 | 0.001661 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 2 | B.6.6 | 0.000889 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 2 | B.6.6 | 0.000889 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | A.11 | 0.058824 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | A.19 | 0.009434 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | A.23 | 0.010526 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | A.4 | 0.012821 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | AV.1 | 0.005051 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctC | 1 | 1 | B.1.1.225 | 0.007194 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.1.251 | 0.007937 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.1.266 | 0.012195 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.1.273 | 0.006757 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.1.378 | 0.007299 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.1.382 | 0.035714 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.162 | 0.005025 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctA | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.203 | 0.0625 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.36.24 | 0.006173 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.36.27 | 0.000763 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.36.9 | 0.003215 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.507 | 0.011236 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.513 | 0.013889 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.49 | 0.05 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp1 | 88 | L88L | Ctg | Ttg | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | P.4 | 0.003802 |
ORF1ab/nsp1 | 88 | L88L | ctG | ctT | 1 | 1 | R.2 | 0.014493 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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