CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : Mut = L4L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14L4LL4LsynctTctC171814300.832363275-277
ORF1ab/nsp14L4LL4LsynctTctA17182670.155413275-277
ORF1ab/nsp14L4LL4LsynctTctG1718210.0122235275-277

Details of the mutation L4L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14L4LctTctC14301718All0.000274
ORF1ab/nsp14L4LctTctA2671718All0.000051
ORF1ab/nsp14L4LctTctG211718All0.000004
ORF1ab/nsp14L4LctTctC9571003B.1.1.70.000857
ORF1ab/nsp14L4LctTctA401003B.1.1.70.000036
ORF1ab/nsp14L4LctTctG61003B.1.1.70.000005
ORF1ab/nsp14L4LctTctC245245B.1.1.5190.009729
ORF1ab/nsp14L4LctTctA100100B.1.5250.011316
ORF1ab/nsp14L4LctTctC5254B.1.5260.001222
ORF1ab/nsp14L4LctTctA254B.1.5260.000047
ORF1ab/nsp14L4LctTctC3536Q.10.004421
ORF1ab/nsp14L4LctTctA136Q.10.000126
ORF1ab/nsp14L4LctTctA1528AY.40.000023
ORF1ab/nsp14L4LctTctC1228AY.40.000019
ORF1ab/nsp14L4LctTctG128AY.40.000002
ORF1ab/nsp14L4LctTctA1222AY.260.00034
ORF1ab/nsp14L4LctTctC1022AY.260.000283
ORF1ab/nsp14L4LctTctC1721AY.1030.000106
ORF1ab/nsp14L4LctTctA421AY.1030.000025
ORF1ab/nsp14L4LctTctC1419B.1.617.20.000053
ORF1ab/nsp14L4LctTctA419B.1.617.20.000015
ORF1ab/nsp14L4LctTctG119B.1.617.20.000004
ORF1ab/nsp14L4LctTctC1315B.10.000119
ORF1ab/nsp14L4LctTctA215B.10.000018
ORF1ab/nsp14L4LctTctA1012AY.250.00006
ORF1ab/nsp14L4LctTctC212AY.250.000012
ORF1ab/nsp14L4LctTctA910AY.440.000055
ORF1ab/nsp14L4LctTctC110AY.440.000006
ORF1ab/nsp14L4LctTctA69AY.430.000027
ORF1ab/nsp14L4LctTctC39AY.430.000013
ORF1ab/nsp14L4LctTctC69B.1.10.000109
ORF1ab/nsp14L4LctTctA29B.1.10.000036
ORF1ab/nsp14L4LctTctG19B.1.10.000018
ORF1ab/nsp14L4LctTctG49P.10.000063
ORF1ab/nsp14L4LctTctC39P.10.000047
ORF1ab/nsp14L4LctTctA29P.10.000032
ORF1ab/nsp14L4LctTctA78AY.1190.000247
ORF1ab/nsp14L4LctTctC18AY.1190.000035
ORF1ab/nsp14L4LctTctA56AY.39.10.000198
ORF1ab/nsp14L4LctTctC16AY.39.10.00004
ORF1ab/nsp14L4LctTctA66B.1.3240.009631
ORF1ab/nsp14L4LctTctC35AY.30.00003
ORF1ab/nsp14L4LctTctG15AY.30.00001
ORF1ab/nsp14L4LctTctA15AY.30.00001
ORF1ab/nsp14L4LctTctA45B.1.20.000035
ORF1ab/nsp14L4LctTctG15B.1.20.000009
ORF1ab/nsp14L4LctTctA34AY.1130.000427
ORF1ab/nsp14L4LctTctC14AY.1130.000142
ORF1ab/nsp14L4LctTctC44B.1.1.4860.006309
ORF1ab/nsp14L4LctTctA24B.1.1770.000026
ORF1ab/nsp14L4LctTctC24B.1.1770.000026
ORF1ab/nsp14L4LctTctC23AY.1020.000053
ORF1ab/nsp14L4LctTctA13AY.1020.000027
ORF1ab/nsp14L4LctTctC23AY.1180.000125
ORF1ab/nsp14L4LctTctA13AY.1180.000063
ORF1ab/nsp14L4LctTctA23AY.460.000208
ORF1ab/nsp14L4LctTctC13AY.460.000104
ORF1ab/nsp14L4LctTctG33AY.470.000093
ORF1ab/nsp14L4LctTctC33B.1.1280.001906
ORF1ab/nsp14L4LctTctC33B.1.6390.065217
ORF1ab/nsp14L4LctTctC33R.10.00027
ORF1ab/nsp14L4LctTctA22AY.1010.000981
ORF1ab/nsp14L4LctTctC22AY.29.10.000441
ORF1ab/nsp14L4LctTctC22AY.390.000049
ORF1ab/nsp14L4LctTctC22AY.46.60.000144
ORF1ab/nsp14L4LctTctA22AY.90.000135
ORF1ab/nsp14L4LctTctC22AY.9.2.10.003953
ORF1ab/nsp14L4LctTctC22B.1.1.2160.001781
ORF1ab/nsp14L4LctTctC22B.1.1.390.001019
ORF1ab/nsp14L4LctTctA22B.1.1600.000062
ORF1ab/nsp14L4LctTctC22B.1.177.810.000379
ORF1ab/nsp14L4LctTctC12B.1.2320.000537
ORF1ab/nsp14L4LctTctA12B.1.2320.000537
ORF1ab/nsp14L4LctTctA22B.1.258.170.000208
ORF1ab/nsp14L4LctTctC22B.60.00182
ORF1ab/nsp14L4LctTctC11AY.1140.000231
ORF1ab/nsp14L4LctTctA11AY.1170.000085
ORF1ab/nsp14L4LctTctC11AY.1210.000135
ORF1ab/nsp14L4LctTctA11AY.20.000356
ORF1ab/nsp14L4LctTctA11AY.290.000016
ORF1ab/nsp14L4LctTctA11AY.320.000532
ORF1ab/nsp14L4LctTctC11AY.330.000067
ORF1ab/nsp14L4LctTctC11AY.340.000097
ORF1ab/nsp14L4LctTctA11AY.4.2.10.000149
ORF1ab/nsp14L4LctTctA11AY.420.00004
ORF1ab/nsp14L4LctTctA11AY.540.000095
ORF1ab/nsp14L4LctTctC11AY.590.00053
ORF1ab/nsp14L4LctTctA11AY.60.000041
ORF1ab/nsp14L4LctTctA11AY.650.000533
ORF1ab/nsp14L4LctTctC11AY.740.000116
ORF1ab/nsp14L4LctTctA11AY.9.20.000037
ORF1ab/nsp14L4LctTctC11AY.980.000079
ORF1ab/nsp14L4LctTctC11B0.000128
ORF1ab/nsp14L4LctTctC11B.1.1.1580.012195
ORF1ab/nsp14L4LctTctC11B.1.1.2220.000204
ORF1ab/nsp14L4LctTctC11B.1.1.2690.001353
ORF1ab/nsp14L4LctTctA11B.1.1.3020.002075
ORF1ab/nsp14L4LctTctA11B.1.1.3720.000689
ORF1ab/nsp14L4LctTctC11B.1.1.700.000341
ORF1ab/nsp14L4LctTctG11B.1.177.70.000165
ORF1ab/nsp14L4LctTctA11B.1.177.730.000566
ORF1ab/nsp14L4LctTctC11B.1.221.10.002907
ORF1ab/nsp14L4LctTctA11B.1.2580.000067
ORF1ab/nsp14L4LctTctC11B.1.3200.001245
ORF1ab/nsp14L4LctTctG11B.1.3290.000608
ORF1ab/nsp14L4LctTctG11B.1.3980.002976
ORF1ab/nsp14L4LctTctC11B.1.466.20.000391
ORF1ab/nsp14L4LctTctA11B.1.4740.001901
ORF1ab/nsp14L4LctTctC11B.1.4990.00105
ORF1ab/nsp14L4LctTctA11B.1.5650.00081
ORF1ab/nsp14L4LctTctA11B.1.5770.000687
ORF1ab/nsp14L4LctTctC11B.1.5800.004065