CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : Mut = L4F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14L4FL4FnonsynCttTtt360836081275-277

Details of the mutation L4F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14L4FCttTtt36083608All0.00069
ORF1ab/nsp14L4FCttTtt19201920A.2.50.958084
ORF1ab/nsp14L4FCttTtt619619A.2.5.20.97327
ORF1ab/nsp14L4FCttTtt208208A.2.5.11
ORF1ab/nsp14L4FCttTtt199199B.1.1.70.000178
ORF1ab/nsp14L4FCttTtt155155AY.430.000687
ORF1ab/nsp14L4FCttTtt110110AY.440.00067
ORF1ab/nsp14L4FCttTtt9393A.2.5.30.958763
ORF1ab/nsp14L4FCttTtt8686AY.40.000134
ORF1ab/nsp14L4FCttTtt3030B.1.617.20.000113
ORF1ab/nsp14L4FCttTtt2222B.1.5260.000517
ORF1ab/nsp14L4FCttTtt1010B.10.000092
ORF1ab/nsp14L4FCttTtt88AY.1050.005145
ORF1ab/nsp14L4FCttTtt88AY.1130.001139
ORF1ab/nsp14L4FCttTtt77AY.1020.000186
ORF1ab/nsp14L4FCttTtt77Q.10.000884
ORF1ab/nsp14L4FCttTtt66AY.1030.000037
ORF1ab/nsp14L4FCttTtt66AY.250.000036
ORF1ab/nsp14L4FCttTtt66AY.390.000148
ORF1ab/nsp14L4FCttTtt55AY.200.000194
ORF1ab/nsp14L4FCttTtt55B.1.10.000091
ORF1ab/nsp14L4FCttTtt55B.1.1770.000066
ORF1ab/nsp14L4FCttTtt55B.1.2580.000333
ORF1ab/nsp14L4FCttTtt44AY.30.00004
ORF1ab/nsp14L4FCttTtt44B.1.1.5190.000159
ORF1ab/nsp14L4FCttTtt33AY.1190.000106
ORF1ab/nsp14L4FCttTtt33AY.39.10.000119
ORF1ab/nsp14L4FCttTtt33AY.680.000821
ORF1ab/nsp14L4FCttTtt33B.1.3510.000089
ORF1ab/nsp14L4FCttTtt33C.36.3.10.008152
ORF1ab/nsp14L4FCttTtt22A0.000774
ORF1ab/nsp14L4FCttTtt22AY.4.20.000043
ORF1ab/nsp14L4FCttTtt22AY.46.60.000144
ORF1ab/nsp14L4FCttTtt22AY.470.000062
ORF1ab/nsp14L4FCttTtt22AY.50.000041
ORF1ab/nsp14L4FCttTtt22AY.98.10.000097
ORF1ab/nsp14L4FCttTtt22B.1.1570.00597
ORF1ab/nsp14L4FCttTtt22B.1.177.820.000955
ORF1ab/nsp14L4FCttTtt22B.1.2340.000264
ORF1ab/nsp14L4FCttTtt22B.1.3110.000549
ORF1ab/nsp14L4FCttTtt22B.1.5250.000226
ORF1ab/nsp14L4FCttTtt22C.370.000232
ORF1ab/nsp14L4FCttTtt22P.10.000032
ORF1ab/nsp14L4FCttTtt11A.2.40.003367
ORF1ab/nsp14L4FCttTtt11AY.1000.000046
ORF1ab/nsp14L4FCttTtt11AY.1110.000183
ORF1ab/nsp14L4FCttTtt11AY.1170.000085
ORF1ab/nsp14L4FCttTtt11AY.1180.000063
ORF1ab/nsp14L4FCttTtt11AY.1200.000037
ORF1ab/nsp14L4FCttTtt11AY.130.000161
ORF1ab/nsp14L4FCttTtt11AY.150.002222
ORF1ab/nsp14L4FCttTtt11AY.290.000016
ORF1ab/nsp14L4FCttTtt11AY.4.2.10.000149
ORF1ab/nsp14L4FCttTtt11AY.46.40.000165
ORF1ab/nsp14L4FCttTtt11AY.60.000041
ORF1ab/nsp14L4FCttTtt11AY.690.000187
ORF1ab/nsp14L4FCttTtt11AY.720.001361
ORF1ab/nsp14L4FCttTtt11AY.90.000068
ORF1ab/nsp14L4FCttTtt11AY.980.000079
ORF1ab/nsp14L4FCttTtt11AY.99.20.000092
ORF1ab/nsp14L4FCttTtt11B0.000128
ORF1ab/nsp14L4FCttTtt11B.1.1.2650.003155
ORF1ab/nsp14L4FCttTtt11B.1.1.280.000311
ORF1ab/nsp14L4FCttTtt11B.1.1.3110.000358
ORF1ab/nsp14L4FCttTtt11B.1.1.3120.001912
ORF1ab/nsp14L4FCttTtt11B.1.1600.000031
ORF1ab/nsp14L4FCttTtt11B.1.177.100.000878
ORF1ab/nsp14L4FCttTtt11B.1.20.000009
ORF1ab/nsp14L4FCttTtt11B.1.2390.001221
ORF1ab/nsp14L4FCttTtt11B.1.351.20.000303
ORF1ab/nsp14L4FCttTtt11B.1.351.30.000876
ORF1ab/nsp14L4FCttTtt11B.1.36.180.00042
ORF1ab/nsp14L4FCttTtt11B.1.36.80.001
ORF1ab/nsp14L4FCttTtt11B.1.3670.000792
ORF1ab/nsp14L4FCttTtt11B.1.4270.00005
ORF1ab/nsp14L4FCttTtt11B.1.4290.000024
ORF1ab/nsp14L4FCttTtt11B.1.466.20.000391
ORF1ab/nsp14L4FCttTtt11B.1.5610.000397
ORF1ab/nsp14L4FCttTtt11B.1.6210.000089
ORF1ab/nsp14L4FCttTtt11B.1.6230.000536
ORF1ab/nsp14L4FCttTtt11P.1.10.000318
ORF1ab/nsp14L4FCttTtt11P.1.170.000162