CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : Mut = L16del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp116L16del1L16del1delctCct-18160.888889311-313
ORF1ab/nsp116L16del1L16del1delcTCcC-1810.0555556311-313
ORF1ab/nsp116L16del1L16del1delcTcc-c1810.0555556311-313

Details of the mutation L16del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp116L16del1ctCct-1618All0.000003
ORF1ab/nsp116L16del1cTCcC-118All0
ORF1ab/nsp116L16del1cTcc-c118All0
ORF1ab/nsp116L16del1ctCct-33B.1.617.20.000011
ORF1ab/nsp116L16del1ctCct-22B.10.000018
ORF1ab/nsp116L16del1ctCct-22B.1.2470.029851
ORF1ab/nsp116L16del1ctCct-22B.1.617.10.000258
ORF1ab/nsp116L16del1ctCct-11AY.160.00038
ORF1ab/nsp116L16del1cTCcC-11AY.430.000004
ORF1ab/nsp116L16del1ctCct-11AY.440.000006
ORF1ab/nsp116L16del1cTcc-c11AY.50.000021
ORF1ab/nsp116L16del1ctCct-11B.1.10.000018
ORF1ab/nsp116L16del1ctCct-11B.1.1.1210.002427
ORF1ab/nsp116L16del1ctCct-11B.1.360.000146
ORF1ab/nsp116L16del1ctCct-11B.1.617.30.002985
ORF1ab/nsp116L16del1ctCct-11P.10.000016