CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 140 | L140L | L140L | syn | Cta | Tta | 20076 | 18971 | 0.944959 | 683-685 |
ORF1ab/nsp1 | 140 | L140L | L140L | syn | ctA | ctG | 20076 | 1075 | 0.0535465 | 683-685 |
ORF1ab/nsp1 | 140 | L140L | L140L | syn | ctA | ctT | 20076 | 25 | 0.00124527 | 683-685 |
ORF1ab/nsp1 | 140 | L140L | L140L | syn | ctA | ctC | 20076 | 5 | 0.000249054 | 683-685 |
Details of the mutation L140L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 18971 | 20076 | All | 0.003628 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 1075 | 20076 | All | 0.000206 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctT | 25 | 20076 | All | 0.000005 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctC | 5 | 20076 | All | 0.000001 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3398 | 3415 | B.1.1.7 | 0.003042 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 15 | 3415 | B.1.1.7 | 0.000013 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctC | 1 | 3415 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctT | 1 | 3415 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2562 | 3240 | B.1.2 | 0.022559 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 678 | 3240 | B.1.2 | 0.00597 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2316 | 2316 | B.1.466.2 | 0.906103 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1016 | 1017 | AY.4 | 0.001581 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 1 | 1017 | AY.4 | 0.000002 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 623 | 623 | B.1.362 | 0.959938 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 327 | 539 | AY.25 | 0.001967 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 211 | 539 | AY.25 | 0.001269 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctT | 1 | 539 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 491 | 499 | B.1.617.2 | 0.001849 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctT | 5 | 499 | B.1.617.2 | 0.000019 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 2 | 499 | B.1.617.2 | 0.000008 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctC | 1 | 499 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 496 | 497 | B.1.427 | 0.025047 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 1 | 497 | B.1.427 | 0.00005 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 469 | 469 | AU.3 | 0.989451 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 429 | 431 | B.1 | 0.003929 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctT | 1 | 431 | B.1 | 0.000009 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 1 | 431 | B.1 | 0.000009 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 420 | 422 | AY.43 | 0.001861 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 2 | 422 | AY.43 | 0.000009 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 406 | 406 | AU.2 | 0.983051 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 334 | 337 | AY.44 | 0.002033 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctT | 3 | 337 | AY.44 | 0.000018 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 276 | 277 | AY.103 | 0.001714 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctC | 1 | 277 | AY.103 | 0.000006 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 260 | 260 | AY.42 | 0.01046 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 254 | 256 | P.1 | 0.004002 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 1 | 256 | P.1 | 0.000016 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctT | 1 | 256 | P.1 | 0.000016 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 212 | 212 | B.1.362.2 | 1 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 178 | 183 | AY.3 | 0.00177 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 5 | 183 | AY.3 | 0.00005 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 173 | 173 | AY.75 | 0.009692 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 164 | 164 | B.1.1 | 0.002975 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 144 | 147 | B.1.177 | 0.001896 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 3 | 147 | B.1.177 | 0.00004 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 129 | 130 | AY.33 | 0.008614 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 1 | 130 | AY.33 | 0.000067 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 128 | 128 | B.1.1.406 | 0.831169 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 111 | 128 | B.1.596 | 0.009672 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 17 | 128 | B.1.596 | 0.001481 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 119 | 119 | AY.52 | 0.096906 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 95 | 96 | B.1.351 | 0.002824 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctT | 1 | 96 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 93 | 93 | AY.102 | 0.002466 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 90 | 92 | AY.39 | 0.002224 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctC | 1 | 92 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 1 | 92 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 91 | 92 | AY.5 | 0.001879 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 1 | 92 | AY.5 | 0.000021 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 91 | 91 | AY.47 | 0.002831 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 86 | 86 | B.1.1.348 | 0.068471 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 81 | 81 | AY.4.2 | 0.001757 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 80 | 80 | B.1.429 | 0.001882 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 79 | 80 | B.1.526 | 0.001857 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctT | 1 | 80 | B.1.526 | 0.000024 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 73 | 73 | AY.29 | 0.001151 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 63 | 63 | B.1.1.526 | 0.223404 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 60 | 60 | AY.13 | 0.009659 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 60 | 60 | B.1.221 | 0.004262 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 59 | 59 | B.1.258.14 | 0.057843 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 50 | 50 | AY.20 | 0.001943 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 50 | 50 | B.1.1.519 | 0.001986 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 47 | 47 | AY.100 | 0.002162 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 47 | 47 | AY.6 | 0.001933 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 47 | 47 | B.1.243 | 0.00327 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 46 | 46 | B.1.160 | 0.001435 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 44 | 44 | AY.120 | 0.001636 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 43 | 43 | B.1.258 | 0.002862 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 42 | 42 | B.1.1.434 | 0.014639 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 41 | 41 | B.1.36 | 0.005982 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 39 | 39 | B.1.525 | 0.004413 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 37 | 37 | B.1.1.214 | 0.002052 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 33 | 33 | D.2 | 0.002476 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 32 | 32 | B.1.621 | 0.002833 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 31 | 31 | AY.118 | 0.001942 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 29 | 29 | AY.46.6 | 0.002094 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 29 | 29 | AY.9.1 | 0.002428 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 28 | 28 | AY.61 | 0.002934 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 28 | 28 | B.1.112 | 0.145078 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 27 | 27 | AY.39.1 | 0.00107 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 26 | 26 | AY.45 | 0.003164 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 26 | 26 | Q.8 | 0.004288 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 25 | 25 | B.1.1.39 | 0.012742 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 23 | 24 | AY.46.4 | 0.003784 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctC | 1 | 24 | AY.46.4 | 0.000165 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 23 | 23 | AY.46 | 0.002394 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 21 | 21 | B.1.628 | 0.0074 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 18 | 20 | AY.23 | 0.001255 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 1 | 20 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctT | 1 | 20 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 20 | 20 | B.1.1.28 | 0.006225 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 19 | 20 | B.1.177.81 | 0.003597 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 1 | 20 | B.1.177.81 | 0.000189 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 20 | 20 | B.1.567 | 0.066667 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 19 | 19 | AY.114 | 0.004391 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 19 | 19 | B.1.1.50 | 0.012899 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 19 | 19 | B.1.232 | 0.01021 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 19 | 19 | B.1.637 | 0.001388 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 19 | 19 | C.37 | 0.002205 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 19 | 19 | P.1.17 | 0.003073 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 18 | 18 | B.1.588 | 0.016379 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 17 | 17 | AY.35 | 0.003962 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 17 | 17 | B.1.462 | 0.123188 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 17 | 17 | B.1.9.5 | 0.096591 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 15 | 16 | AY.113 | 0.002136 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 1 | 16 | AY.113 | 0.000142 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 16 | 16 | AY.26 | 0.000453 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 16 | 16 | B.1.234 | 0.002111 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 16 | 16 | Q.1 | 0.002021 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 15 | 15 | AY.108 | 0.016538 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 15 | 15 | AY.3.1 | 0.001279 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 15 | 15 | AY.9.2 | 0.000551 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 15 | 15 | B.1.218 | 0.07732 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 15 | 15 | B.1.362.1 | 1 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 13 | 15 | B.1.438.1 | 0.001394 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctT | 2 | 15 | B.1.438.1 | 0.000215 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 15 | 15 | B.1.595 | 0.003914 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 15 | 15 | B.1.617.1 | 0.001934 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 15 | 15 | P.1.6 | 0.029183 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 14 | 14 | AQ.1 | 1 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 14 | 14 | AY.5.3 | 0.004723 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 14 | 14 | B.1.1.222 | 0.002856 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 14 | 14 | B.1.1.70 | 0.004775 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 14 | 14 | B.1.177.60 | 0.003058 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 14 | 14 | B.1.240 | 0.003018 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 14 | 14 | P.1.14 | 0.000669 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 13 | 13 | B.1.1.25 | 0.007391 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 13 | 13 | B.1.239 | 0.015873 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 13 | 13 | B.1.474 | 0.024715 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 12 | 12 | AY.27 | 0.000777 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 12 | 12 | AY.98.1 | 0.000581 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 12 | 12 | AY.99.2 | 0.001106 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 12 | 12 | B | 0.001534 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 12 | 12 | B.1.1.265 | 0.037855 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 11 | 11 | AY.119 | 0.000388 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 11 | 11 | AY.41 | 0.003233 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 11 | 11 | AY.57 | 0.007218 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 10 | 11 | AY.98 | 0.00079 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 1 | 11 | AY.98 | 0.000079 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 11 | 11 | B.1.1.284 | 0.001181 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 11 | 11 | B.1.1.368 | 0.033951 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 11 | 11 | B.1.146 | 0.04661 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 11 | 11 | B.1.428.3 | 0.141026 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 10 | 10 | AY.117 | 0.000845 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 10 | 10 | B.1.1.1 | 0.003267 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 10 | 10 | B.1.241 | 0.008117 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 9 | 9 | AY.121 | 0.001218 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 9 | 9 | AY.64 | 0.005357 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 9 | 9 | AY.72 | 0.012245 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 9 | 9 | B.1.561 | 0.003573 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 8 | 8 | A | 0.003096 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 8 | 8 | AY.111 | 0.001465 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 8 | 8 | AY.75.1 | 0.001442 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 8 | 8 | AY.9 | 0.000541 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 8 | 8 | B.1.1.306 | 0.003507 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 8 | 8 | B.1.36.36 | 0.004816 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 8 | 8 | B.1.36.38 | 0.013136 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 8 | 8 | B.1.459 | 0.032653 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 8 | 8 | B.1.582 | 0.003925 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 7 | 7 | AD.2 | 0.001533 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 7 | 7 | AY.4.5 | 0.000752 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 7 | 7 | AY.62 | 0.00305 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 7 | 7 | AY.65 | 0.003731 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 7 | 7 | AY.92 | 0.002011 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 5 | 7 | B.1.1.207 | 0.00591 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 2 | 7 | B.1.1.207 | 0.002364 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 7 | 7 | B.1.105 | 0.067308 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 7 | 7 | B.1.177.79 | 0.016393 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 7 | 7 | B.1.177.83 | 0.01037 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 7 | 7 | B.1.280 | 0.05 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 7 | 7 | B.1.564 | 0.002981 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 7 | 7 | B.1.609 | 0.003356 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 7 | 7 | C.36 | 0.006375 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 6 | 6 | A.1 | 0.001691 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 6 | 6 | A.2.5 | 0.002994 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 6 | 6 | AY.37 | 0.001896 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 6 | 6 | AY.46.3 | 0.005602 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 6 | 6 | B.1.1.433 | 0.008547 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 6 | 6 | B.1.1.521 | 0.032086 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctT | 5 | 6 | B.1.177.56 | 0.003338 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 6 | B.1.177.56 | 0.000668 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 6 | 6 | B.1.301 | 0.035503 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 6 | 6 | B.1.346 | 0.007864 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 6 | 6 | B.1.400 | 0.002574 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 6 | 6 | P.1.16 | 0.002245 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 5 | 5 | AN.1 | 0.1 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 5 | 5 | AU.1 | 0.006329 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 5 | 5 | AY.23.1 | 0.002087 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 5 | 5 | AY.32 | 0.002662 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 5 | 5 | AY.59 | 0.002648 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 5 | 5 | AY.66 | 0.005348 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 5 | 5 | AY.7.1 | 0.000564 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 5 | 5 | AY.74 | 0.000578 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 5 | 5 | AY.94 | 0.002213 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 5 | 5 | B.1.1.10 | 0.005574 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 5 | 5 | B.1.1.277 | 0.003794 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 5 | 5 | B.1.1.294 | 0.006329 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 5 | 5 | B.1.1.37 | 0.000964 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 5 | 5 | B.1.145 | 0.263158 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 5 | 5 | B.1.177.4 | 0.001055 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 5 | 5 | B.1.177.73 | 0.002831 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 5 | 5 | B.1.177.86 | 0.000917 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 5 | 5 | B.1.469 | 0.018051 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 5 | 5 | B.3 | 0.004153 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 5 | 5 | P.1.12 | 0.00242 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 5 | 5 | P.1.4 | 0.004883 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 4 | 4 | AE.8 | 0.001956 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | AY.104 | 0.007937 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 4 | AY.110 | 0.000338 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctT | 1 | 4 | AY.110 | 0.000113 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | AY.116.1 | 0.001246 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | AY.14 | 0.000352 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | AY.2 | 0.001425 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | AY.30 | 0.001583 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | AY.4.4 | 0.001637 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | AY.7 | 0.000784 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | AY.79 | 0.004843 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | AY.84 | 0.00175 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | AY.99 | 0.004197 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | B.1.1.170 | 0.004988 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | B.1.1.241 | 0.008282 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | B.1.1.351 | 0.011173 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | B.1.1.47 | 0.02139 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 4 | B.1.1.63 | 0.001157 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 1 | 4 | B.1.1.63 | 0.000386 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | B.1.142 | 0.011594 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | B.1.177.58 | 0.005326 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | B.1.36.8 | 0.004 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | B.1.499 | 0.004202 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | B.1.560 | 0.018519 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | B.1.600 | 0.023392 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | N.5 | 0.007067 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | P.1.10 | 0.001078 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | A.23.1 | 0.002113 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | AY.101 | 0.001471 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | AY.24 | 0.001293 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | B.1.1.369 | 0.001339 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | B.1.1.380 | 0.029412 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | B.1.1.385 | 0.013393 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | B.1.1.58 | 0.016129 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | B.1.126 | 0.003827 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | B.1.177.12 | 0.000455 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | B.1.177.57 | 0.000843 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | B.1.206 | 0.002447 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 2 | 3 | B.1.258.17 | 0.000208 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 3 | B.1.258.17 | 0.000104 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | B.1.349 | 0.002144 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | B.1.351.5 | 0.001799 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | B.1.36.17 | 0.001482 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | B.1.36.7 | 0.012 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | B.1.361 | 0.003866 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | B.1.367 | 0.002377 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | B.1.408 | 0.01107 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | B.1.420 | 0.03125 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | B.1.426 | 0.003027 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 2 | 3 | B.1.517 | 0.000854 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 3 | B.1.517 | 0.000427 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | B.1.538 | 0.024194 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | B.1.619 | 0.002613 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | B.1.93 | 0.002801 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | B.40 | 0.001093 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 3 | 3 | Q.4 | 0.001364 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | A.2.5.2 | 0.003145 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 2 | A.27 | 0.001656 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctT | 1 | 2 | A.27 | 0.001656 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | A.29 | 0.010638 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 2 | 2 | AY.9.2.1 | 0.003953 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | AY.90 | 0.001369 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | AY.96 | 0.004149 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.1.217 | 0.007273 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.1.279 | 0.002242 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.1.289 | 0.004167 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.1.354 | 0.008772 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.1.422 | 0.090909 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.1.46 | 0.008734 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.1.518 | 0.012658 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.128 | 0.001271 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.157 | 0.00597 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.160.16 | 0.001859 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.177.10 | 0.001756 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.177.11 | 0.003396 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.177.2 | 0.009091 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.177.62 | 0.002384 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.214.3 | 0.014286 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.222 | 0.003384 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.236 | 0.004107 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.258.3 | 0.00335 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.279 | 0.001027 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.36.10 | 0.009569 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.36.19 | 0.018519 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.36.39 | 0.004435 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.389 | 0.002004 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.401 | 0.016393 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.415.1 | 0.015152 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.416.1 | 0.003125 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.441 | 0.019231 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.521 | 0.00995 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.580 | 0.00813 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.597 | 0.009259 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | B.1.631 | 0.006734 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | C.1 | 0.004785 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 2 | 2 | W.4 | 0.002703 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AE.4 | 0.043478 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AK.1 | 0.012658 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.132 | 0.014925 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.145 | 0.037037 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.180 | 0.010753 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.187 | 0.00885 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.200 | 0.007463 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.208 | 0.012195 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.229 | 0.005747 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.282 | 0.011628 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.350 | 0.04 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.375 | 0.011905 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.4 | 0.002976 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.421 | 0.030303 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.437 | 0.010417 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.48 | 0.002874 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.52 | 0.012195 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.62 | 0.027027 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.1.86 | 0.035714 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.118 | 0.006711 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctG | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.177.29 | 0.066667 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.221.4 | 0.004167 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.225 | 0.015385 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.243.1 | 0.022222 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.267 | 0.018519 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.36.21 | 0.00216 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.36.37 | 0.002778 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.403 | 0.003268 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.434 | 0.052632 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.438 | 0.006536 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.446 | 0.02 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.460 | 0.017857 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.466 | 0.023256 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.504 | 0.03125 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.516 | 0.001957 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.543 | 0.01 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.571 | 0.009709 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.591 | 0.010638 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.610 | 0.003546 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.4.1 | 0.018868 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.58 | 0.010204 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | C.11 | 0.010638 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | C.3 | 0.007634 |
ORF1ab/nsp1 | 140 | L140L | ctA | ctT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | K.1 | 0.02381 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | P.1.11 | 0.010204 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp1 | 140 | L140L | Cta | Tta | 1 | 1 | W.2 | 0.004831 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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