CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : Mut = K141del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp1	141	K141del	K141del	del	AAG	---	32706	32706	1	686-688

Details of the mutation K141del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp1	141	K141del	AAG	---	32706	32706	All	0.006255
ORF1ab/nsp1	141	K141del	AAG	---	4180	4180	AY.4	0.006506
ORF1ab/nsp1	141	K141del	AAG	---	3455	3455	AY.110	0.38934
ORF1ab/nsp1	141	K141del	AAG	---	2980	2980	AY.70	0.621351
ORF1ab/nsp1	141	K141del	AAG	---	2451	2451	AY.63	0.948162
ORF1ab/nsp1	141	K141del	AAG	---	2176	2176	B.1.617.2	0.008194
ORF1ab/nsp1	141	K141del	AAG	---	1793	1793	B.1.1.7	0.001605
ORF1ab/nsp1	141	K141del	AAG	---	753	753	AY.26	0.021318
ORF1ab/nsp1	141	K141del	AAG	---	711	711	AY.72	0.967347
ORF1ab/nsp1	141	K141del	AAG	---	670	670	AY.25	0.00403
ORF1ab/nsp1	141	K141del	AAG	---	663	663	B.1	0.006073
ORF1ab/nsp1	141	K141del	AAG	---	632	632	AY.44	0.003847
ORF1ab/nsp1	141	K141del	AAG	---	601	601	AY.43	0.002663
ORF1ab/nsp1	141	K141del	AAG	---	596	596	AY.120	0.022159
ORF1ab/nsp1	141	K141del	AAG	---	480	480	AY.103	0.00298
ORF1ab/nsp1	141	K141del	AAG	---	457	457	AY.3	0.004545
ORF1ab/nsp1	141	K141del	AAG	---	319	319	B.1.160	0.009949
ORF1ab/nsp1	141	K141del	AAG	---	315	315	AY.5	0.006505
ORF1ab/nsp1	141	K141del	AAG	---	312	312	AY.4.2	0.006767
ORF1ab/nsp1	141	K141del	AAG	---	304	304	AY.61	0.031852
ORF1ab/nsp1	141	K141del	AAG	---	262	262	AY.75	0.014678
ORF1ab/nsp1	141	K141del	AAG	---	260	260	B.1.160.17	0.442177
ORF1ab/nsp1	141	K141del	AAG	---	241	241	AY.46.6	0.017402
ORF1ab/nsp1	141	K141del	AAG	---	237	237	B.1.2	0.002087
ORF1ab/nsp1	141	K141del	AAG	---	214	214	AY.102	0.005674
ORF1ab/nsp1	141	K141del	AAG	---	181	181	AY.16.1	0.085056
ORF1ab/nsp1	141	K141del	AAG	---	172	172	B.1.526	0.004043
ORF1ab/nsp1	141	K141del	AAG	---	169	169	AY.46	0.01759
ORF1ab/nsp1	141	K141del	AAG	---	165	165	AY.39	0.004077
ORF1ab/nsp1	141	K141del	AAG	---	163	163	B.1.1	0.002957
ORF1ab/nsp1	141	K141del	AAG	---	148	148	B.1.1.519	0.005877
ORF1ab/nsp1	141	K141del	AAG	---	137	137	P.1	0.002158
ORF1ab/nsp1	141	K141del	AAG	---	136	136	AY.47	0.00423
ORF1ab/nsp1	141	K141del	AAG	---	133	133	AY.21	0.252372
ORF1ab/nsp1	141	K141del	AAG	---	133	133	AY.4.5	0.014296
ORF1ab/nsp1	141	K141del	AAG	---	124	124	B.1.351	0.003686
ORF1ab/nsp1	141	K141del	AAG	---	123	123	B.1.258	0.008185
ORF1ab/nsp1	141	K141del	AAG	---	117	117	B.1.177	0.001541
ORF1ab/nsp1	141	K141del	AAG	---	115	115	AY.54	0.010965
ORF1ab/nsp1	141	K141del	AAG	---	111	111	AY.33	0.007412
ORF1ab/nsp1	141	K141del	AAG	---	100	100	AY.120.1	0.032103
ORF1ab/nsp1	141	K141del	AAG	---	99	99	AY.42	0.003983
ORF1ab/nsp1	141	K141del	AAG	---	99	99	B.1.429	0.002329
ORF1ab/nsp1	141	K141del	AAG	---	98	98	B.1.621	0.008675
ORF1ab/nsp1	141	K141del	AAG	---	97	97	AY.9.1	0.008121
ORF1ab/nsp1	141	K141del	AAG	---	96	96	D.2	0.007204
ORF1ab/nsp1	141	K141del	AAG	---	95	95	AY.37	0.030025
ORF1ab/nsp1	141	K141del	AAG	---	95	95	AY.39.1	0.003763
ORF1ab/nsp1	141	K141del	AAG	---	94	94	AY.119	0.003319
ORF1ab/nsp1	141	K141del	AAG	---	91	91	AY.9.2	0.003342
ORF1ab/nsp1	141	K141del	AAG	---	91	91	B.1.372	1
ORF1ab/nsp1	141	K141del	AAG	---	86	86	B.1.243	0.005984
ORF1ab/nsp1	141	K141del	AAG	---	77	77	AY.74	0.008905
ORF1ab/nsp1	141	K141del	AAG	---	69	69	B.1.195	0.346734
ORF1ab/nsp1	141	K141del	AAG	---	68	68	B.1.637	0.004969
ORF1ab/nsp1	141	K141del	AAG	---	65	65	AY.96	0.134855
ORF1ab/nsp1	141	K141del	AAG	---	60	60	B.1.177.21	0.004588
ORF1ab/nsp1	141	K141del	AAG	---	60	60	B.1.427	0.00303
ORF1ab/nsp1	141	K141del	AAG	---	58	58	AY.29	0.000915
ORF1ab/nsp1	141	K141del	AAG	---	58	58	B.1.1.214	0.003217
ORF1ab/nsp1	141	K141del	AAG	---	57	57	AY.7	0.011172
ORF1ab/nsp1	141	K141del	AAG	---	56	56	AY.118	0.003508
ORF1ab/nsp1	141	K141del	AAG	---	56	56	AY.14	0.004929
ORF1ab/nsp1	141	K141del	AAG	---	55	55	B.1.438.1	0.005899
ORF1ab/nsp1	141	K141del	AAG	---	53	53	AY.13	0.008532
ORF1ab/nsp1	141	K141del	AAG	---	53	53	B.1.1.318	0.015993
ORF1ab/nsp1	141	K141del	AAG	---	52	52	AY.100	0.002392
ORF1ab/nsp1	141	K141del	AAG	---	52	52	AY.45	0.006328
ORF1ab/nsp1	141	K141del	AAG	---	50	50	AY.20	0.001943
ORF1ab/nsp1	141	K141del	AAG	---	45	45	AY.3.1	0.003837
ORF1ab/nsp1	141	K141del	AAG	---	45	45	AY.9	0.003042
ORF1ab/nsp1	141	K141del	AAG	---	45	45	B.1.1.222	0.00918
ORF1ab/nsp1	141	K141del	AAG	---	44	44	AY.35	0.010254
ORF1ab/nsp1	141	K141del	AAG	---	44	44	AY.91	0.03214
ORF1ab/nsp1	141	K141del	AAG	---	43	43	AY.109	0.031805
ORF1ab/nsp1	141	K141del	AAG	---	43	43	C.35	0.033282
ORF1ab/nsp1	141	K141del	AAG	---	42	42	AY.23	0.002929
ORF1ab/nsp1	141	K141del	AAG	---	42	42	AY.75.1	0.007573
ORF1ab/nsp1	141	K141del	AAG	---	39	39	AY.98	0.003081
ORF1ab/nsp1	141	K141del	AAG	---	39	39	B.1.596	0.003398
ORF1ab/nsp1	141	K141del	AAG	---	38	38	AY.46.4	0.006251
ORF1ab/nsp1	141	K141del	AAG	---	36	36	AY.98.1	0.001744
ORF1ab/nsp1	141	K141del	AAG	---	36	36	B.1.232	0.019344
ORF1ab/nsp1	141	K141del	AAG	---	35	35	AY.10	0.018548
ORF1ab/nsp1	141	K141del	AAG	---	35	35	AY.27	0.002265
ORF1ab/nsp1	141	K141del	AAG	---	34	34	AY.117	0.002874
ORF1ab/nsp1	141	K141del	AAG	---	34	34	C.36.3	0.019285
ORF1ab/nsp1	141	K141del	AAG	---	33	33	AY.6	0.001357
ORF1ab/nsp1	141	K141del	AAG	---	33	33	AY.99.2	0.003041
ORF1ab/nsp1	141	K141del	AAG	---	33	33	B.1.258.17	0.003431
ORF1ab/nsp1	141	K141del	AAG	---	32	32	B.1.1.70	0.010914
ORF1ab/nsp1	141	K141del	AAG	---	31	31	B	0.003962
ORF1ab/nsp1	141	K141del	AAG	---	30	30	B.1.221	0.002131
ORF1ab/nsp1	141	K141del	AAG	---	29	29	AY.5.3	0.009784
ORF1ab/nsp1	141	K141del	AAG	---	28	28	AY.107	0.013048
ORF1ab/nsp1	141	K141del	AAG	---	28	28	AY.65	0.014925
ORF1ab/nsp1	141	K141del	AAG	---	28	28	B.1.1.284	0.003007
ORF1ab/nsp1	141	K141del	AAG	---	27	27	AY.114	0.00624
ORF1ab/nsp1	141	K141del	AAG	---	27	27	AY.9.2.1	0.05336
ORF1ab/nsp1	141	K141del	AAG	---	27	27	B.1.1.37	0.005207
ORF1ab/nsp1	141	K141del	AAG	---	27	27	B.1.628	0.009514
ORF1ab/nsp1	141	K141del	AAG	---	26	26	AY.55	0.023853
ORF1ab/nsp1	141	K141del	AAG	---	26	26	B.1.1.374	0.061758
ORF1ab/nsp1	141	K141del	AAG	---	26	26	B.1.595.1	0.152047
ORF1ab/nsp1	141	K141del	AAG	---	26	26	P.1.14	0.001243
ORF1ab/nsp1	141	K141del	AAG	---	25	25	AE.1	0.284091
ORF1ab/nsp1	141	K141del	AAG	---	25	25	AY.69	0.004667
ORF1ab/nsp1	141	K141del	AAG	---	24	24	A.27	0.039735
ORF1ab/nsp1	141	K141del	AAG	---	24	24	AY.120.2.1	0.011958
ORF1ab/nsp1	141	K141del	AAG	---	24	24	B.1.258.22	0.064
ORF1ab/nsp1	141	K141del	AAG	---	23	23	AY.1	0.009102
ORF1ab/nsp1	141	K141del	AAG	---	23	23	AY.53	0.006613
ORF1ab/nsp1	141	K141del	AAG	---	23	23	B.1.234	0.003035
ORF1ab/nsp1	141	K141del	AAG	---	22	22	AE.8	0.010758
ORF1ab/nsp1	141	K141del	AAG	---	22	22	AY.62	0.009586
ORF1ab/nsp1	141	K141del	AAG	---	22	22	AY.71	0.010451
ORF1ab/nsp1	141	K141del	AAG	---	22	22	B.1.240	0.004742
ORF1ab/nsp1	141	K141del	AAG	---	21	21	B.1.1.176	0.009227
ORF1ab/nsp1	141	K141del	AAG	---	20	20	B.1.1.50	0.013578
ORF1ab/nsp1	141	K141del	AAG	---	20	20	B.1.177.56	0.013351
ORF1ab/nsp1	141	K141del	AAG	---	20	20	Q.1	0.002527
ORF1ab/nsp1	141	K141del	AAG	---	19	19	AY.34	0.001842
ORF1ab/nsp1	141	K141del	AAG	---	19	19	AY.36	0.002816
ORF1ab/nsp1	141	K141del	AAG	---	19	19	AY.48	0.008837
ORF1ab/nsp1	141	K141del	AAG	---	19	19	AY.51	0.017273
ORF1ab/nsp1	141	K141del	AAG	---	19	19	B.1.177.4	0.00401
ORF1ab/nsp1	141	K141del	AAG	---	19	19	B.1.621.1	0.009611
ORF1ab/nsp1	141	K141del	AAG	---	18	18	P.1.10	0.00485
ORF1ab/nsp1	141	K141del	AAG	---	17	17	AY.90	0.011636
ORF1ab/nsp1	141	K141del	AAG	---	16	16	AY.16	0.006074
ORF1ab/nsp1	141	K141del	AAG	---	16	16	B.1.279	0.008218
ORF1ab/nsp1	141	K141del	AAG	---	16	16	Q.8	0.002639
ORF1ab/nsp1	141	K141del	AAG	---	15	15	AY.30	0.005936
ORF1ab/nsp1	141	K141del	AAG	---	15	15	B.1.517	0.006405
ORF1ab/nsp1	141	K141del	AAG	---	15	15	C.18	0.03886
ORF1ab/nsp1	141	K141del	AAG	---	15	15	P.1.17	0.002426
ORF1ab/nsp1	141	K141del	AAG	---	14	14	AY.12	0.004425
ORF1ab/nsp1	141	K141del	AAG	---	14	14	AY.59	0.007415
ORF1ab/nsp1	141	K141del	AAG	---	14	14	B.1.177.12	0.002124
ORF1ab/nsp1	141	K141del	AAG	---	14	14	B.1.239	0.017094
ORF1ab/nsp1	141	K141del	AAG	---	14	14	B.1.35	0.118644
ORF1ab/nsp1	141	K141del	AAG	---	14	14	B.1.36	0.002043
ORF1ab/nsp1	141	K141del	AAG	---	14	14	B.1.36.18	0.005882
ORF1ab/nsp1	141	K141del	AAG	---	14	14	B.1.36.36	0.008429
ORF1ab/nsp1	141	K141del	AAG	---	13	13	AY.121	0.001759
ORF1ab/nsp1	141	K141del	AAG	---	13	13	AY.52	0.010586
ORF1ab/nsp1	141	K141del	AAG	---	13	13	AY.58	0.011797
ORF1ab/nsp1	141	K141del	AAG	---	13	13	B.1.1.372	0.008953
ORF1ab/nsp1	141	K141del	AAG	---	13	13	C.37	0.001509
ORF1ab/nsp1	141	K141del	AAG	---	12	12	AY.113	0.001709
ORF1ab/nsp1	141	K141del	AAG	---	12	12	AY.116	0.003441
ORF1ab/nsp1	141	K141del	AAG	---	12	12	AY.2	0.004274
ORF1ab/nsp1	141	K141del	AAG	---	12	12	AY.4.2.1	0.001788
ORF1ab/nsp1	141	K141del	AAG	---	12	12	AY.7.1	0.001352
ORF1ab/nsp1	141	K141del	AAG	---	12	12	AZ.2	0.009852
ORF1ab/nsp1	141	K141del	AAG	---	12	12	B.1.1.434	0.004183
ORF1ab/nsp1	141	K141del	AAG	---	12	12	B.1.139	0.008798
ORF1ab/nsp1	141	K141del	AAG	---	12	12	B.1.400	0.005148
ORF1ab/nsp1	141	K141del	AAG	---	12	12	P.1.7	0.003831
ORF1ab/nsp1	141	K141del	AAG	---	11	11	AD.2	0.002409
ORF1ab/nsp1	141	K141del	AAG	---	11	11	B.1.1.153	0.012048
ORF1ab/nsp1	141	K141del	AAG	---	11	11	B.1.1.365	0.061453
ORF1ab/nsp1	141	K141del	AAG	---	11	11	B.1.568	0.012222
ORF1ab/nsp1	141	K141del	AAG	---	10	10	AU.1	0.012658
ORF1ab/nsp1	141	K141del	AAG	---	10	10	AY.24	0.00431
ORF1ab/nsp1	141	K141del	AAG	---	10	10	AY.92	0.002873
ORF1ab/nsp1	141	K141del	AAG	---	10	10	AY.93	0.002731
ORF1ab/nsp1	141	K141del	AAG	---	10	10	B.1.1.33	0.004209
ORF1ab/nsp1	141	K141del	AAG	---	10	10	B.1.320	0.012453
ORF1ab/nsp1	141	K141del	AAG	---	10	10	B.1.329	0.006075
ORF1ab/nsp1	141	K141del	AAG	---	10	10	B.1.623	0.005365
ORF1ab/nsp1	141	K141del	AAG	---	10	10	B.1.630	0.052356
ORF1ab/nsp1	141	K141del	AAG	---	9	9	AY.34.1	0.004589
ORF1ab/nsp1	141	K141del	AAG	---	9	9	AY.60	0.008443
ORF1ab/nsp1	141	K141del	AAG	---	9	9	AY.94	0.003984
ORF1ab/nsp1	141	K141del	AAG	---	9	9	B.1.1.433	0.012821
ORF1ab/nsp1	141	K141del	AAG	---	9	9	B.1.36.21	0.019438
ORF1ab/nsp1	141	K141del	AAG	---	9	9	B.1.422	0.007311
ORF1ab/nsp1	141	K141del	AAG	---	9	9	B.1.551	0.011613
ORF1ab/nsp1	141	K141del	AAG	---	9	9	B.1.582	0.004416
ORF1ab/nsp1	141	K141del	AAG	---	8	8	AY.38	0.003994
ORF1ab/nsp1	141	K141del	AAG	---	8	8	AY.57	0.005249
ORF1ab/nsp1	141	K141del	AAG	---	8	8	AY.84	0.0035
ORF1ab/nsp1	141	K141del	AAG	---	8	8	AY.88	0.007073
ORF1ab/nsp1	141	K141del	AAG	---	8	8	B.1.1.311	0.002865
ORF1ab/nsp1	141	K141del	AAG	---	8	8	B.1.1.348	0.006369
ORF1ab/nsp1	141	K141del	AAG	---	8	8	B.1.214.2	0.004796
ORF1ab/nsp1	141	K141del	AAG	---	8	8	B.1.349	0.005718
ORF1ab/nsp1	141	K141del	AAG	---	8	8	B.1.39	0.03125
ORF1ab/nsp1	141	K141del	AAG	---	8	8	B.1.525	0.000905
ORF1ab/nsp1	141	K141del	AAG	---	8	8	B.1.564	0.003407
ORF1ab/nsp1	141	K141del	AAG	---	8	8	P.1.15	0.001859
ORF1ab/nsp1	141	K141del	AAG	---	7	7	AY.19	0.007982
ORF1ab/nsp1	141	K141del	AAG	---	7	7	AY.41	0.002058
ORF1ab/nsp1	141	K141del	AAG	---	7	7	AY.46.5	0.001389
ORF1ab/nsp1	141	K141del	AAG	---	7	7	AY.64	0.004167
ORF1ab/nsp1	141	K141del	AAG	---	7	7	AY.85	0.00299
ORF1ab/nsp1	141	K141del	AAG	---	7	7	B.1.1.1	0.002287
ORF1ab/nsp1	141	K141del	AAG	---	7	7	B.1.1.141	0.014085
ORF1ab/nsp1	141	K141del	AAG	---	7	7	B.1.1.204	0.021277
ORF1ab/nsp1	141	K141del	AAG	---	7	7	B.1.1.277	0.005311
ORF1ab/nsp1	141	K141del	AAG	---	7	7	B.1.1.306	0.003069
ORF1ab/nsp1	141	K141del	AAG	---	7	7	B.1.1.523	0.010937
ORF1ab/nsp1	141	K141del	AAG	---	7	7	B.1.128	0.004447
ORF1ab/nsp1	141	K141del	AAG	---	7	7	B.1.160.24	0.030973
ORF1ab/nsp1	141	K141del	AAG	---	7	7	B.1.177.15	0.004416
ORF1ab/nsp1	141	K141del	AAG	---	7	7	B.1.177.60	0.001529
ORF1ab/nsp1	141	K141del	AAG	---	7	7	B.1.258.3	0.011725
ORF1ab/nsp1	141	K141del	AAG	---	7	7	B.1.36.19	0.064815
ORF1ab/nsp1	141	K141del	AAG	---	7	7	B.1.497	0.002203
ORF1ab/nsp1	141	K141del	AAG	---	7	7	B.1.588	0.006369
ORF1ab/nsp1	141	K141del	AAG	---	7	7	B.1.617.1	0.000903
ORF1ab/nsp1	141	K141del	AAG	---	7	7	B.31	0.026119
ORF1ab/nsp1	141	K141del	AAG	---	7	7	B.6	0.006369
ORF1ab/nsp1	141	K141del	AAG	---	6	6	A.1	0.001691
ORF1ab/nsp1	141	K141del	AAG	---	6	6	AY.106	0.002009
ORF1ab/nsp1	141	K141del	AAG	---	6	6	AY.39.2	0.009245
ORF1ab/nsp1	141	K141del	AAG	---	6	6	AY.5.4	0.00166
ORF1ab/nsp1	141	K141del	AAG	---	6	6	AY.78	0.009245
ORF1ab/nsp1	141	K141del	AAG	---	6	6	B.1.1.132	0.089552
ORF1ab/nsp1	141	K141del	AAG	---	6	6	B.1.1.301	0.007075
ORF1ab/nsp1	141	K141del	AAG	---	6	6	B.1.1.377	0.008287
ORF1ab/nsp1	141	K141del	AAG	---	6	6	B.1.1.63	0.002315
ORF1ab/nsp1	141	K141del	AAG	---	6	6	B.1.177.81	0.001136
ORF1ab/nsp1	141	K141del	AAG	---	6	6	B.1.177.86	0.001101
ORF1ab/nsp1	141	K141del	AAG	---	6	6	B.1.235	0.015113
ORF1ab/nsp1	141	K141del	AAG	---	6	6	B.1.236	0.01232
ORF1ab/nsp1	141	K141del	AAG	---	6	6	B.1.351.2	0.001815
ORF1ab/nsp1	141	K141del	AAG	---	6	6	B.1.36.22	0.007246
ORF1ab/nsp1	141	K141del	AAG	---	6	6	P.2	0.00112
ORF1ab/nsp1	141	K141del	AAG	---	5	5	A	0.001935
ORF1ab/nsp1	141	K141del	AAG	---	5	5	A.2.5	0.002495
ORF1ab/nsp1	141	K141del	AAG	---	5	5	AP.1	0.007508
ORF1ab/nsp1	141	K141del	AAG	---	5	5	AY.22	0.01046
ORF1ab/nsp1	141	K141del	AAG	---	5	5	AY.28	0.009452
ORF1ab/nsp1	141	K141del	AAG	---	5	5	AY.87	0.004163
ORF1ab/nsp1	141	K141del	AAG	---	5	5	B.1.1.170	0.006234
ORF1ab/nsp1	141	K141del	AAG	---	5	5	B.1.1.39	0.002548
ORF1ab/nsp1	141	K141del	AAG	---	5	5	B.1.1.416	0.004525
ORF1ab/nsp1	141	K141del	AAG	---	5	5	B.1.177.62	0.005959
ORF1ab/nsp1	141	K141del	AAG	---	5	5	B.1.346	0.006553
ORF1ab/nsp1	141	K141del	AAG	---	5	5	B.1.409	0.003906
ORF1ab/nsp1	141	K141del	AAG	---	5	5	B.1.416	0.006345
ORF1ab/nsp1	141	K141del	AAG	---	5	5	B.1.524	0.007032
ORF1ab/nsp1	141	K141del	AAG	---	5	5	B.1.595	0.001305
ORF1ab/nsp1	141	K141del	AAG	---	5	5	C.38	0.040323
ORF1ab/nsp1	141	K141del	AAG	---	5	5	P.1.13	0.004492
ORF1ab/nsp1	141	K141del	AAG	---	5	5	R.1	0.00045
ORF1ab/nsp1	141	K141del	AAG	---	4	4	A.3	0.008386
ORF1ab/nsp1	141	K141del	AAG	---	4	4	AY.108	0.00441
ORF1ab/nsp1	141	K141del	AAG	---	4	4	AY.11	0.005355
ORF1ab/nsp1	141	K141del	AAG	---	4	4	AY.23.1	0.001669
ORF1ab/nsp1	141	K141del	AAG	---	4	4	AY.29.1	0.000882
ORF1ab/nsp1	141	K141del	AAG	---	4	4	AY.46.2	0.002541
ORF1ab/nsp1	141	K141del	AAG	---	4	4	AY.67	0.001857
ORF1ab/nsp1	141	K141del	AAG	---	4	4	AY.79	0.004843
ORF1ab/nsp1	141	K141del	AAG	---	4	4	B.1.1.216	0.003562
ORF1ab/nsp1	141	K141del	AAG	---	4	4	B.1.1.279	0.004484
ORF1ab/nsp1	141	K141del	AAG	---	4	4	B.1.1.294	0.005063
ORF1ab/nsp1	141	K141del	AAG	---	4	4	B.1.1.307	0.010127
ORF1ab/nsp1	141	K141del	AAG	---	4	4	B.1.1.61	0.035088
ORF1ab/nsp1	141	K141del	AAG	---	4	4	B.1.110.3	0.002874
ORF1ab/nsp1	141	K141del	AAG	---	4	4	B.1.126	0.005102
ORF1ab/nsp1	141	K141del	AAG	---	4	4	B.1.161	0.068966
ORF1ab/nsp1	141	K141del	AAG	---	4	4	B.1.177.59	0.064516
ORF1ab/nsp1	141	K141del	AAG	---	4	4	B.1.294	0.129032
ORF1ab/nsp1	141	K141del	AAG	---	4	4	B.1.311	0.001098
ORF1ab/nsp1	141	K141del	AAG	---	4	4	B.1.356	0.006908
ORF1ab/nsp1	141	K141del	AAG	---	4	4	B.1.36.17	0.001976
ORF1ab/nsp1	141	K141del	AAG	---	4	4	B.1.369	0.001141
ORF1ab/nsp1	141	K141del	AAG	---	4	4	B.1.380	0.02649
ORF1ab/nsp1	141	K141del	AAG	---	4	4	B.1.404	0.005208
ORF1ab/nsp1	141	K141del	AAG	---	4	4	B.1.575	0.001214
ORF1ab/nsp1	141	K141del	AAG	---	4	4	C.1.2	0.017021
ORF1ab/nsp1	141	K141del	AAG	---	4	4	C.36	0.003643
ORF1ab/nsp1	141	K141del	AAG	---	3	3	AY.111	0.000549
ORF1ab/nsp1	141	K141del	AAG	---	3	3	AY.116.1	0.000934
ORF1ab/nsp1	141	K141del	AAG	---	3	3	AY.56	0.004815
ORF1ab/nsp1	141	K141del	AAG	---	3	3	AY.95	0.002283
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.1.189	0.004539
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.1.219	0.015
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.1.225	0.021583
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.1.228	0.009146
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.1.28	0.000934
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.1.369	0.001339
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.1.417	0.008108
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.1.461	0.036145
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.1.487	0.01676
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.111	0.003525
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.119	0.031579
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.13	0.007126
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.177.10	0.002634
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.177.87	0.002183
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.192	0.027778
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.241	0.002435
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.258.14	0.002941
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.340	0.012876
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.36.35	0.007812
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.361	0.003866
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.396	0.002117
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.426	0.003027
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.428	0.003061
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.466.1	0.021583
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.466.2	0.001174
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.489	0.130435
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.577	0.002062
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.609	0.001438
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.619	0.002613
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.1.91	0.006224
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.19	0.111111
ORF1ab/nsp1	141	K141del	AAG	---	3	3	B.28	0.009836
ORF1ab/nsp1	141	K141del	AAG	---	3	3	C.30	0.005181
ORF1ab/nsp1	141	K141del	AAG	---	3	3	C.36.3.1	0.008152
ORF1ab/nsp1	141	K141del	AAG	---	3	3	N.4	0.012766
ORF1ab/nsp1	141	K141del	AAG	---	3	3	P.1.12	0.001452
ORF1ab/nsp1	141	K141del	AAG	---	3	3	P.3	0.004785
ORF1ab/nsp1	141	K141del	AAG	---	2	2	A.2.2	0.003378
ORF1ab/nsp1	141	K141del	AAG	---	2	2	A.21	0.00554
ORF1ab/nsp1	141	K141del	AAG	---	2	2	A.23.1	0.001408
ORF1ab/nsp1	141	K141del	AAG	---	2	2	AE.5	0.037037
ORF1ab/nsp1	141	K141del	AAG	---	2	2	AW.1	0.006098
ORF1ab/nsp1	141	K141del	AAG	---	2	2	AY.101	0.000981
ORF1ab/nsp1	141	K141del	AAG	---	2	2	AY.104	0.003968
ORF1ab/nsp1	141	K141del	AAG	---	2	2	AY.120.2	0.002571
ORF1ab/nsp1	141	K141del	AAG	---	2	2	AY.4.4	0.000818
ORF1ab/nsp1	141	K141del	AAG	---	2	2	AY.46.3	0.001867
ORF1ab/nsp1	141	K141del	AAG	---	2	2	AY.5.2	0.004926
ORF1ab/nsp1	141	K141del	AAG	---	2	2	AY.66	0.002139
ORF1ab/nsp1	141	K141del	AAG	---	2	2	AY.68	0.000547
ORF1ab/nsp1	141	K141del	AAG	---	2	2	AY.7.2	0.001119
ORF1ab/nsp1	141	K141del	AAG	---	2	2	AY.73	0.001331
ORF1ab/nsp1	141	K141del	AAG	---	2	2	AY.77	0.002255
ORF1ab/nsp1	141	K141del	AAG	---	2	2	AY.81	0.003984
ORF1ab/nsp1	141	K141del	AAG	---	2	2	AY.86	0.00166
ORF1ab/nsp1	141	K141del	AAG	---	2	2	AY.99.1	0.003106
ORF1ab/nsp1	141	K141del	AAG	---	2	2	AZ.2.1	0.01626
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.10	0.00223
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.164	0.010309
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.174	0.006757
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.192	0.004619
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.207	0.002364
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.232	0.00363
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.25	0.001137
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.263	0.003115
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.265	0.006309
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.288	0.003831
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.291	0.001485
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.303	0.005525
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.312	0.003824
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.368	0.006173
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.385	0.008929
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.404	0.031746
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.409	0.005666
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.420	0.002012
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.447	0.071429
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.448	0.004065
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.459	0.030769
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.464	0.002946
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.48	0.005747
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.485	0.033333
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.521	0.010695
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.1.54	0.006042
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.112	0.010363
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.147	0.001512
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.157	0.00597
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.160.28	0.005848
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.160.30	0.005952
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.177.16	0.001329
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.177.45	0.000762
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.177.65	0.001331
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.177.7	0.00033
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.177.75	0.002081
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.177.8	0.001505
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.206	0.001631
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.258.16	0.003273
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.258.4	0.006897
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.258.7	0.003824
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.298	0.004228
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.319	0.006098
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.333	0.021053
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.336	0.004878
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.351.5	0.001199
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.36.1	0.002281
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.36.29	0.001035
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.36.31	0.003503
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.36.34	0.042553
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.36.38	0.003284
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.391	0.002255
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.406	0.012121
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.438	0.013072
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.471	0.005464
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.499	0.002101
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.523	0.004902
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.558	0.009132
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.561	0.000794
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.565	0.001621
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.574	0.004301
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.576	0.001813
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.612	0.005305
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.613	0.054054
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.627	0.00404
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.78	0.017094
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.1.9.5	0.011364
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.4	0.004415
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.40	0.000729
ORF1ab/nsp1	141	K141del	AAG	---	2	2	B.57	0.030303
ORF1ab/nsp1	141	K141del	AAG	---	2	2	C.36.2	0.068966
ORF1ab/nsp1	141	K141del	AAG	---	2	2	N.6	0.014184
ORF1ab/nsp1	141	K141del	AAG	---	2	2	P.1.17.1	0.00175
ORF1ab/nsp1	141	K141del	AAG	---	2	2	P.1.4	0.001953
ORF1ab/nsp1	141	K141del	AAG	---	2	2	Q.4	0.00091
ORF1ab/nsp1	141	K141del	AAG	---	2	2	U.3	0.007722
ORF1ab/nsp1	141	K141del	AAG	---	1	1	A.2	0.000662
ORF1ab/nsp1	141	K141del	AAG	---	1	1	A.2.5.2	0.001572
ORF1ab/nsp1	141	K141del	AAG	---	1	1	A.29	0.005319
ORF1ab/nsp1	141	K141del	AAG	---	1	1	AD.1	0.004115
ORF1ab/nsp1	141	K141del	AAG	---	1	1	AT.1	0.005128
ORF1ab/nsp1	141	K141del	AAG	---	1	1	AU.2	0.002421
ORF1ab/nsp1	141	K141del	AAG	---	1	1	AY.31	0.018519
ORF1ab/nsp1	141	K141del	AAG	---	1	1	AY.32	0.000532
ORF1ab/nsp1	141	K141del	AAG	---	1	1	AY.39.1.1	0.000725
ORF1ab/nsp1	141	K141del	AAG	---	1	1	AY.4.1	0.000737
ORF1ab/nsp1	141	K141del	AAG	---	1	1	AY.4.3	0.000842
ORF1ab/nsp1	141	K141del	AAG	---	1	1	AY.46.1	0.001027
ORF1ab/nsp1	141	K141del	AAG	---	1	1	AY.49	0.003195
ORF1ab/nsp1	141	K141del	AAG	---	1	1	AY.8	0.000606
ORF1ab/nsp1	141	K141del	AAG	---	1	1	AY.89	0.004902
ORF1ab/nsp1	141	K141del	AAG	---	1	1	AY.99	0.001049
ORF1ab/nsp1	141	K141del	AAG	---	1	1	AZ.3	0.00152
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.101	0.01
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.115	0.008929
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.121	0.002427
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.123	0.017857
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.128	0.007092
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.148	0.008772
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.161	0.003534
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.163	0.007634
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.181	0.004545
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.231	0.003096
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.253	0.002506
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.261	0.008621
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.262	0.015152
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.270	0.010309
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.274	0.005051
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.280	0.003086
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.283	0.023256
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.285	0.006536
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.297	0.002237
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.298	0.000862
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.302	0.002075
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.347	0.018182
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.354	0.004386
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.370	0.012658
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.373	0.02381
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.376	0.005952
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.378	0.007299
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.397	0.002252
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.438	0.05
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.44	0.00241
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.486	0.001577
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.51	0.001718
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.517	0.006803
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.53	0.013699
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.58	0.005376
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.75	0.010638
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.82	0.038462
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.89	0.006061
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.1.98	0.018519
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.106	0.03125
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.108	0.005814
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.127	0.002198
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.149	0.003425
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.160.14	0.002119
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.160.16	0.000929
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.160.25	0.011111
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.160.26	0.002421
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.160.27	0.015152
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.160.33	0.004425
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.160.7	0.002079
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.169	0.014925
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.170	0.00431
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.177.11	0.001698
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.177.18	0.00116
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.177.30	0.002513
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.177.32	0.00135
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.177.39	0.015385
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.177.43	0.001477
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.177.44	0.000519
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.177.5	0.001242
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.177.52	0.001757
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.177.55	0.002331
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.177.57	0.000281
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.177.72	0.00339
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.177.82	0.000477
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.189	0.004292
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.190	0.01
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.210	0.002132
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.214.3	0.007143
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.221.2	0.004016
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.222	0.001692
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.223	0.002778
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.240.1	0.025
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.243.1	0.022222
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.258.11	0.000396
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.258.12	0.007874
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.258.5	0.008772
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.260	0.003344
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.265	0.001271
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.276	0.016949
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.313	0.006579
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.315	0.006061
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.328	0.03125
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.351.3	0.000876
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.36.10	0.004785
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.36.16	0.001425
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.36.26	0.002857
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.36.7	0.004
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.36.9	0.003215
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.362.2	0.004717
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.367	0.000792
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.375	0.00082
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.377	0.004566
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.378	0.006849
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.381	0.007812
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.389	0.001002
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.408	0.00369
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.415	0.014286
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.416.1	0.001563
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.425	0.002994
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.435	0.011364
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.438.4	0.021277
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.443	0.004673
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.446	0.02
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.450	0.011364
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.451	0.008197
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.452	0.013699
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.453	0.003236
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.462	0.007246
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.465	0.003802
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.474	0.001901
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.509	0.000866
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.549	0.007194
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.555	0.022222
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.564.1	0.001577
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.567	0.003333
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.573	0.006098
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.580	0.004065
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.599	0.00365
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.610	0.003546
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.617.3	0.002985
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.620	0.000946
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.625	0.002353
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.634	0.003425
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.1.636	0.006711
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.15	0.017544
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.23	0.002924
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.29	0.003509
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.3	0.000831
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.34	0.013699
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.4.4	0.018868
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.45	0.003831
ORF1ab/nsp1	141	K141del	AAG	---	1	1	B.50	0.111111
ORF1ab/nsp1	141	K141del	AAG	---	1	1	C.17	0.055556
ORF1ab/nsp1	141	K141del	AAG	---	1	1	C.26	0.007353
ORF1ab/nsp1	141	K141del	AAG	---	1	1	L.1	0.001905
ORF1ab/nsp1	141	K141del	AAG	---	1	1	N.5	0.001767
ORF1ab/nsp1	141	K141del	AAG	---	1	1	P.1.1	0.000318
ORF1ab/nsp1	141	K141del	AAG	---	1	1	P.1.11	0.010204
ORF1ab/nsp1	141	K141del	AAG	---	1	1	P.1.16	0.000374
ORF1ab/nsp1	141	K141del	AAG	---	1	1	P.1.6	0.001946
ORF1ab/nsp1	141	K141del	AAG	---	1	1	Q.3	0.000145
ORF1ab/nsp1	141	K141del	AAG	---	1	1	R.2	0.014493
ORF1ab/nsp1	141	K141del	AAG	---	1	1	S.1	0.00495
ORF1ab/nsp1	141	K141del	AAG	---	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.