CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 83 | H83del | H83del | del | CAT | --- | 21712 | 21712 | 1 | 512-514 |
Details of the mutation H83del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 21712 | 21712 | All | 0.004153 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4815 | 4815 | AY.4 | 0.007494 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1814 | 1814 | B.1.1.7 | 0.001624 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1599 | 1599 | AY.26 | 0.045268 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1415 | 1415 | B.1.617.2 | 0.005328 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1162 | 1162 | AY.43 | 0.005148 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 774 | 774 | AY.44 | 0.004711 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 637 | 637 | AY.25 | 0.003831 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 501 | 501 | AY.120 | 0.018627 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 453 | 453 | AY.103 | 0.002813 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 441 | 441 | AY.3 | 0.004386 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 380 | 380 | AY.4.2 | 0.008242 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 327 | 327 | B.1.621 | 0.028946 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 254 | 254 | AY.19 | 0.289624 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 251 | 251 | AY.5 | 0.005183 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 227 | 227 | AY.39 | 0.00561 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 207 | 207 | B.1 | 0.001896 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 204 | 204 | AY.102 | 0.005409 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 200 | 200 | AY.8 | 0.121212 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 196 | 196 | AY.75 | 0.01098 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 172 | 172 | B.1.2 | 0.001515 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 157 | 157 | AY.27 | 0.010161 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 141 | 141 | AY.46.5 | 0.027976 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 127 | 127 | AY.47 | 0.00395 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 125 | 125 | AY.42 | 0.005029 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 125 | 125 | B.1.177 | 0.001646 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 124 | 124 | AY.39.1 | 0.004912 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 115 | 115 | AY.9.2 | 0.004224 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 110 | 110 | B.1.1.214 | 0.0061 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 101 | 101 | AY.46 | 0.010512 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 97 | 97 | AY.29 | 0.00153 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 97 | 97 | AY.6 | 0.003989 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 95 | 95 | AY.119 | 0.003354 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 94 | 94 | AY.46.6 | 0.006787 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 91 | 91 | AY.74 | 0.010524 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 87 | 87 | B.1.526 | 0.002045 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 86 | 86 | AY.9 | 0.005813 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 85 | 85 | AY.33 | 0.005676 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 85 | 85 | B.1.1 | 0.001542 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 83 | 83 | P.1 | 0.001308 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 77 | 77 | AY.54 | 0.007342 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 77 | 77 | B | 0.009842 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 75 | 75 | B.1.177.21 | 0.005735 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 74 | 74 | AY.46.4 | 0.012173 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 73 | 73 | AY.20 | 0.002837 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 66 | 66 | AY.99.2 | 0.006082 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 62 | 62 | AY.118 | 0.003884 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 59 | 59 | B.1.1.519 | 0.002343 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 58 | 58 | AY.117 | 0.004902 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 55 | 55 | AY.9.1 | 0.004605 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 54 | 54 | AY.34 | 0.005236 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 54 | 54 | B.1.429 | 0.001271 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 53 | 53 | B.1.351 | 0.001576 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 53 | 53 | P.1.14 | 0.002533 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 52 | 52 | AY.65 | 0.027719 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 51 | 51 | B.1.160 | 0.001591 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 50 | 50 | AY.7.1 | 0.005635 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 48 | 48 | AY.3.1 | 0.004092 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 47 | 47 | AY.100 | 0.002162 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 43 | 43 | AY.7 | 0.008428 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 41 | 41 | AY.4.5 | 0.004407 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 40 | 40 | AY.14 | 0.003521 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 39 | 39 | AY.4.2.1 | 0.00581 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 39 | 39 | B.1.258 | 0.002595 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 38 | 38 | AY.16 | 0.014427 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 38 | 38 | B.1.258.17 | 0.003951 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 36 | 36 | AY.13 | 0.005795 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 36 | 36 | AY.75.1 | 0.006491 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 35 | 35 | AY.53 | 0.010063 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 34 | 34 | AY.11 | 0.045515 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 34 | 34 | AY.12 | 0.010746 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 34 | 34 | AY.120.1 | 0.010915 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 34 | 34 | AY.23 | 0.002371 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 33 | 33 | AY.98 | 0.002607 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 31 | 31 | AY.46.2 | 0.019695 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 31 | 31 | B.1.427 | 0.001565 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 29 | 29 | AY.111 | 0.005311 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 28 | 28 | AY.36 | 0.00415 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 25 | 25 | AY.45 | 0.003042 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 24 | 24 | AY.35 | 0.005593 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 22 | 22 | AY.37 | 0.006953 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 21 | 21 | AY.1 | 0.00831 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 21 | 21 | AY.114 | 0.004853 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 21 | 21 | AY.121 | 0.002842 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 21 | 21 | AY.70 | 0.004379 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 21 | 21 | B.1.234 | 0.002771 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 21 | 21 | B.1.243 | 0.001461 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 20 | 20 | AY.93 | 0.005461 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 20 | 20 | B.1.637 | 0.001461 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 19 | 19 | P.1.10 | 0.00512 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 18 | 18 | AY.38 | 0.008987 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 18 | 18 | AY.62 | 0.007843 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 17 | 17 | AY.106 | 0.005693 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 17 | 17 | AY.110 | 0.001916 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 17 | 17 | AY.113 | 0.002421 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 17 | 17 | AY.46.3 | 0.015873 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 17 | 17 | AY.92 | 0.004884 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 17 | 17 | AY.94 | 0.007525 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 16 | 16 | AU.1 | 0.020253 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 16 | 16 | AY.4.4 | 0.006547 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 16 | 16 | B.1.1.39 | 0.008155 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 16 | 16 | B.1.438.1 | 0.001716 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 16 | 16 | B.1.517 | 0.006832 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 15 | 15 | AY.116 | 0.004302 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 15 | 15 | B.1.1.318 | 0.004526 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 15 | 15 | B.1.596 | 0.001307 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 15 | 15 | B.40 | 0.005464 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 15 | 15 | C.37 | 0.001741 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 14 | 14 | AY.5.3 | 0.004723 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 14 | 14 | AY.5.4 | 0.003874 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 14 | 14 | B.1.525 | 0.001584 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 14 | 14 | P.1.16 | 0.005238 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 13 | 13 | AD.2 | 0.002847 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 13 | 13 | AY.71 | 0.006176 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 13 | 13 | B.1.1.50 | 0.008826 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 13 | 13 | B.1.400 | 0.005577 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 13 | 13 | D.2 | 0.000976 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 13 | 13 | P.1.1 | 0.00413 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 12 | 12 | AY.120.2.1 | 0.005979 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 12 | 12 | AY.16.1 | 0.005639 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 12 | 12 | AY.64 | 0.007143 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 12 | 12 | AY.80 | 0.013544 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 11 | 11 | AY.105 | 0.007074 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 11 | 11 | AY.88 | 0.009726 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 11 | 11 | B.1.1.434 | 0.003834 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 11 | 11 | B.1.177.54 | 0.006671 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 11 | 11 | P.1.13 | 0.009883 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 10 | 10 | AY.24 | 0.00431 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 10 | 10 | AY.55 | 0.009174 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 10 | 10 | AY.7.2 | 0.005593 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 10 | 10 | B.1.1.305 | 0.03861 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 10 | 10 | B.1.36 | 0.001459 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 10 | 10 | P.1.17.1 | 0.008749 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 9 | 9 | AY.10 | 0.004769 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 9 | 9 | AY.87 | 0.007494 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 9 | 9 | AY.91 | 0.006574 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 9 | 9 | B.1.1.284 | 0.000967 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 9 | 9 | B.1.595 | 0.002349 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 9 | 9 | P.2 | 0.00168 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 8 | 8 | AY.120.2 | 0.010283 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 8 | 8 | AY.48 | 0.003721 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 8 | 8 | AY.90 | 0.005476 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 8 | 8 | B.1.177.26 | 0.055944 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 8 | 8 | B.1.177.43 | 0.011817 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 8 | 8 | B.1.36.18 | 0.003361 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 8 | 8 | B.1.623 | 0.004292 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 8 | 8 | R.1 | 0.00072 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 7 | 7 | AY.107 | 0.003262 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 7 | 7 | AY.22 | 0.014644 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 7 | 7 | AY.51 | 0.006364 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 7 | 7 | AY.69 | 0.001307 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 7 | 7 | AY.98.1 | 0.000339 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 7 | 7 | B.1.1.207 | 0.008274 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 7 | 7 | B.1.1.304 | 0.019663 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 7 | 7 | B.1.111 | 0.008226 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 7 | 7 | B.1.160.26 | 0.016949 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 7 | 7 | B.1.22 | 0.009223 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 7 | 7 | B.1.349 | 0.005004 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 7 | 7 | B.1.36.9 | 0.022508 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 7 | 7 | B.1.497 | 0.002203 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 7 | 7 | B.1.575 | 0.002124 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 6 | 6 | AY.101 | 0.002943 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 6 | 6 | AY.109 | 0.004438 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 6 | 6 | AY.40 | 0.005786 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 6 | 6 | AY.41 | 0.001764 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 6 | 6 | AY.52 | 0.004886 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 6 | 6 | B.1.1.222 | 0.001224 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 6 | 6 | B.1.1.416 | 0.00543 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 6 | 6 | B.1.1.420 | 0.006036 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 6 | 6 | B.1.1.70 | 0.002046 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 6 | 6 | B.1.110.1 | 0.6 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 6 | 6 | B.1.128 | 0.003812 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 6 | 6 | B.1.177.30 | 0.015075 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 6 | 6 | B.1.177.81 | 0.001136 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 6 | 6 | B.1.380 | 0.039735 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 6 | 6 | B.1.617.1 | 0.000774 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 6 | 6 | C.36 | 0.005464 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | AY.116.1 | 0.001557 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | AY.2 | 0.001781 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | AY.4.3 | 0.004209 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | AY.58 | 0.004537 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | AY.60 | 0.00469 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | AY.68 | 0.001369 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | AY.72 | 0.006803 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | AY.73 | 0.003327 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | B.1.1.348 | 0.003981 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | B.1.1.369 | 0.002231 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | B.1.1.523 | 0.007812 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | B.1.177.4 | 0.001055 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | B.1.177.6 | 0.004883 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | B.1.177.86 | 0.000917 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | B.1.351.2 | 0.001513 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | B.1.351.5 | 0.002998 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | B.1.36.25 | 0.011038 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | B.1.609 | 0.002397 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | B.1.621.1 | 0.002529 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | B.1.628 | 0.001762 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | B.29 | 0.017544 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | C.36.3 | 0.002836 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 5 | 5 | P.1.15 | 0.001162 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | A.2.5 | 0.001996 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | A.27 | 0.006623 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | AY.29.1 | 0.000882 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | AY.32 | 0.00213 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | AY.4.1 | 0.00295 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | AY.50 | 0.003197 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | AY.57 | 0.002625 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | AY.66 | 0.004278 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | AY.84 | 0.00175 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | B.1.1.170 | 0.004988 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | B.1.1.176 | 0.001757 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | B.1.1.218 | 0.030769 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | B.1.1.232 | 0.00726 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | B.1.1.298 | 0.003448 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | B.1.1.307 | 0.010127 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | B.1.1.37 | 0.000771 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | B.1.160.11 | 0.022857 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | B.1.160.8 | 0.005155 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | B.1.177.12 | 0.000607 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | B.1.177.44 | 0.002076 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | B.1.177.57 | 0.001124 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | B.1.177.7 | 0.000659 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | B.1.199 | 0.016529 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | B.1.206 | 0.003263 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | B.1.214.2 | 0.002398 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | B.1.279 | 0.002054 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | B.23 | 0.011696 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 4 | 4 | Q.7 | 0.004444 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | A | 0.001161 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | A.2.5.2 | 0.004717 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | AU.3 | 0.006329 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | AY.34.1 | 0.00153 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | AY.82 | 0.004071 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | AY.86 | 0.00249 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | AY.89 | 0.014706 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | B.1.1.311 | 0.001074 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | B.1.110 | 0.013575 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | B.1.110.3 | 0.002155 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | B.1.160.7 | 0.006237 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | B.1.190 | 0.03 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | B.1.356 | 0.005181 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | B.1.36.17 | 0.001482 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | B.1.361 | 0.003866 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | B.1.422 | 0.002437 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | B.3 | 0.002492 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | C.30.1 | 0.020134 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | N.4 | 0.012766 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | P.3 | 0.004785 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 3 | 3 | Q.3 | 0.000435 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | AT.1 | 0.010256 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | AY.15 | 0.004444 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | AY.28 | 0.003781 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | AY.39.2 | 0.003082 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | AY.63 | 0.000774 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | AY.78 | 0.003082 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | AY.91.1 | 0.00813 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | AZ.2.1 | 0.01626 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.1.101 | 0.02 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.1.132 | 0.029851 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.1.198 | 0.002937 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.1.224 | 0.028571 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.1.240 | 0.00939 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.1.269 | 0.002706 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.1.303 | 0.005525 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.1.349 | 0.020619 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.1.377 | 0.002762 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.1.428 | 0.018868 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.1.433 | 0.002849 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.1.464 | 0.002946 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.1.47 | 0.010695 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.1.528 | 0.009615 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.1.8 | 0.007168 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.126 | 0.002551 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.139 | 0.001466 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.151 | 0.022222 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.160.18 | 0.014599 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.177.10 | 0.001756 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.177.35 | 0.001382 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.177.5 | 0.002484 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.177.70 | 0.011834 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.177.89 | 0.04878 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.179 | 0.007519 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.222 | 0.003384 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.258.14 | 0.001961 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.258.16 | 0.003273 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.292 | 0.117647 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.329 | 0.001215 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.336 | 0.004878 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.344 | 0.016393 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.36.21 | 0.00432 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.36.7 | 0.008 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.404 | 0.002604 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.409 | 0.001563 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.425 | 0.005988 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.471 | 0.005464 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.474 | 0.003802 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.480 | 0.004975 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.523 | 0.004902 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.588 | 0.00182 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.618 | 0.008065 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.625 | 0.004706 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.634 | 0.006849 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.639 | 0.043478 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.1.8 | 0.003945 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.30 | 0.029412 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.4.4 | 0.037736 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.5 | 0.076923 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.55 | 0.0059 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | C.35 | 0.001548 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | Q.2 | 0.001227 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 2 | 2 | W.4 | 0.002703 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | A.2.3 | 0.004739 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | A.23 | 0.010526 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | AE.1 | 0.011364 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | AZ.4 | 0.003356 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.13 | 0.035714 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.138 | 0.006061 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.204 | 0.00304 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.234 | 0.012048 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.251 | 0.007937 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.338 | 0.017241 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.360 | 0.03125 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.38 | 0.058824 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.4 | 0.002976 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.406 | 0.006494 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.41 | 0.006329 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.463 | 0.0625 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.5 | 0.008333 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.67 | 0.004566 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.1.89 | 0.006061 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.105 | 0.009615 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.108 | 0.005814 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.160.10 | 0.008065 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.160.19 | 0.035714 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.213 | 0.014925 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.254 | 0.025 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.256 | 0.017241 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.258.9 | 0.005 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.287 | 0.030303 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.289 | 0.00266 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.390 | 0.010638 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.402 | 0.009804 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.423 | 0.010204 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.450 | 0.011364 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.460 | 0.017857 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.487 | 0.019608 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.505 | 0.004386 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.506 | 0.02381 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.542 | 0.03125 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.543 | 0.01 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.550 | 0.013699 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.554 | 0.004405 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.556 | 0.007519 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.586 | 0.010989 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.593 | 0.01087 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.595.3 | 0.026316 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.601 | 0.030303 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.622 | 0.012987 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.626 | 0.005714 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.84 | 0.020833 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.1.88.1 | 0.004808 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.35 | 0.007812 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | B.45 | 0.003831 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | C.2 | 0.016129 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | C.31 | 0.017857 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | C.36.1 | 0.004149 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | C.8 | 0.004464 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | D.5 | 0.004975 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | N.1 | 0.016949 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | N.2 | 0.038462 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | Q.6 | 0.006623 |
ORF1ab/nsp1 | 83 | H83del | CAT | --- | 1 | 1 | W.2 | 0.004831 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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